Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002475

Physical Location & Seq

Genomic Coordinates Reverse (-)

19346588 .. 19348920

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGACGAGGTCGAATCCAGGTCAAGCTAAAACTCCATCCCCAGTTCTCTTGCACACAGATGAAAGTGGCCCGTTTTCAGAGTTTAAGAAGGGTTCTGGTTCAAGTACAGCTTTAAGAAACACTGCTCCCGGAAAGTCATTTCTGGGTCTACCAAACACAGTTGGCATAATTGGAGGGCTATCTGTCGATTCTAGTGTTAAATTTATGAGAAAACTTGTCAATTGGAGTTCAAGAGATGGAGAAAGTTGCCCTCCTTTAGTTCTTTGTTCTGACCATGTTTCAAATAAGGAGCTTTTATCATTTGAGAGAAGTTCCTTTCCTTTTGTCAGCAGTAAAAGAGATGGTCCTGAATTCGAACCTACTCCAATTGTGGAGAATTTGCTGAGTAAGAGGATTTTTCTTGAAAAATCGGGAGCTCGTTGCATTGTAATGCCTTGTCACATATCACATTCTTGGCATGATGAAATTTCTAAGGGATGTTCTGTTCCTTTTCTTCATATTGGTGAGTGTGTTGTTAAGGAGCTCAAGGAAGCAAAGTTGAAACCGTTTGAAGCCGGAAGTCCTTTGCGGATTGGAGTGCTTGCAAGCCATGCAACTTTGACAGCAGGATTCTATCAGGAGAAACTGCAGAGCGAGGGATTTGAGGTTGTTCTGCCGGATAAAGTGACCATGGAATACTATGTAATCCCTGCTATTGAAGCCTTAAATAGAAAGGACATAGAGGGGGCACAAAATCTCTTAAGGATCGCACTCCAGGTTCTTCTGGCGAGGGTTGTGAACTCTGTTATTCTTGCATCCGATGATATGCGAGGTCTTCTTCACCTGGATCCTCTTCTTAAGAAATGCATTGACCCTATGGATGCCTTGGCTAGGTCAACCATAAGCTGGGCTGAGTCTGCTAAAAAAGATGATTCAAAGAAGAAAAAACTGAAGAAGAAGAAAAAGGATCCAAATGCACCCAAAAGAGCGATGTCTGCTTTCATGTTCTTCTCAAATATGGAGAGACATAATGTCAAGAGAGAGAACCCTGGAATTGCGTTTGCTGATGTGGGGAGAGTGCTTGGAGAGAAGTGGAAAAAGATGTCTACGGAGGAAAAGGAGCCATATGAAGCAAGGTCTCGTCAAGATAAAGAACGCTACAAGGATGAAATTAGTGGCTACAAGAACCCCCAACCCATGAACATAGATTCACAAGGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_Glu_race HMG_box

Protein Analysis

401

Amino Acids

44.47

Weight (kDa)

9.16

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15410 AT1G15410
fragaria_vesca	FvH4_1g03590 FvH4_1g03590 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270
malus_domestica	MD02G1035500.v1.1 MD17G1205400.v1.1 MD17G1205900.v1.1
prunus_persica	Prupe.3G081000_v2.0.a1 Prupe.7G239700_v2.0.a1 Prupe.7G239700_v2.0.a1
pyrus_communis	pycom02g02920 pycom17g20920
rosa_chinensis	RchiOBHm_Chr2g0089121 RchiOBHm_Chr2g0136511
rosa_laevigata	RLG00000015993 RLG00000019538
rosa_multiflora	Rmu_sc0012034.1_g000001 Rmu_sc0016750.1_g000005 Rmu_sc0035394.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108210 Rroxscaffold_2G00152230
rosa_rugosa	Rorug01G0487500 Rorug02G0331500 Rorug02G0331600
rosa_samantha	Rh2AG043100 Rh2AG382400 Rh2BG041600 Rh2BG389000 Rh2CG043300 Rh2CG368700 Rh2DG042300 Rh2DG405700
rosa_wichuraiana	Rw2G003450 Rw2G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	885
AccI	GTMKAC	2 cut(s)	148, 1085
AciI	CCGC	1 cut(s)	568
AclWI	GGATC	5 cut(s)	752, 821, 834, 941, 954
AcsI	RAATTY	4 cut(s)	200, 350, 376, 465
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	870, 885
AflII	CTTAAG	2 cut(s)	739, 836
AgsI	TTSAA	8 cut(s)	102, 231, 282, 404, 541, 551, 698, 915
AhdI	GACNNNNNGTC	1 cut(s)	1010
AjnI	CCWGG	4 cut(s)	16, 753, 822, 1027
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	6 cut(s)	26, 110, 292, 416, 523, 885
AluI	AGCT	6 cut(s)	26, 110, 292, 416, 523, 885
Alw21I	GWGCWC	2 cut(s)	418, 525
Alw26I	GTCTC	2 cut(s)	997, 1122
AlwI	GGATC	5 cut(s)	752, 821, 834, 941, 954
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	4 cut(s)	200, 350, 376, 465
AspS9I	GGNCC	2 cut(s)	68, 344
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	515, 812
AsuII	TTCGAA	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	730
BamHI	GGATCC	2 cut(s)	826, 946
BanII	GRGCYC	2 cut(s)	418, 525
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	418, 525
BccI	CCATC	3 cut(s)	43, 230, 335
BciT130I	CCWGG	4 cut(s)	18, 755, 824, 1029
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	997, 1122
BfaI	CTAG	2 cut(s)	192, 870
BfmI	CTRYAG	1 cut(s)	626
BfrI	CTTAAG	2 cut(s)	739, 836
Bme1390I	CCNGG	5 cut(s)	18, 129, 755, 824, 1029
Bme18I	GGWCC	1 cut(s)	344
BmeRI	GACNNNNNGTC	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	68, 344
BmiI	GGNNCC	3 cut(s)	828, 948, 1101
BmrFI	CCNGG	5 cut(s)	18, 129, 755, 824, 1029
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	803, 850
BmuI	ACTGGG	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	1122
BsaJI	CCNNGG	3 cut(s)	669, 864, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	870, 885
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	4 cut(s)	18, 755, 824, 1029
BseDI	CCNNGG	3 cut(s)	669, 864, 1027
BseGI	GGATG	5 cut(s)	35, 482, 794, 865, 1150
BseLI	CCNNNNNNNGG	2 cut(s)	870, 885
BseMII	CTCAG	2 cut(s)	374, 882
BseNI	ACTGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	730
BseYI	CCCAGC	1 cut(s)	885
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	418, 525
BsiSI	CCGG	3 cut(s)	129, 555, 656
BslI	CCNNNNNNNGG	2 cut(s)	870, 885
BsmAI	GTCTC	2 cut(s)	997, 1122
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	1122
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	418, 525, 730
Bsp143I	GATC	3 cut(s)	744, 826, 946
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	375, 883
BspLI	GGNNCC	3 cut(s)	828, 948, 1101
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	5 cut(s)	752, 821, 834, 941, 954
BspT104I	TTCGAA	1 cut(s)	354
BspTI	CTTAAG	2 cut(s)	739, 836
BspTNI	GGTCTC	1 cut(s)	1122
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	669, 864, 1027
BssMI	GATC	3 cut(s)	744, 826, 946
BssT1I	CCWWGG	2 cut(s)	669, 864
Bst2UI	CCWGG	4 cut(s)	18, 755, 824, 1029
Bst4CI	ACNGT	2 cut(s)	160, 546
Bst6I	CTCTTC	1 cut(s)	837
BstAFI	CTTAAG	2 cut(s)	739, 836
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	582, 586
BstDEI	CTNAG	3 cut(s)	383, 471, 891
BstDSI	CCRYGG	1 cut(s)	669
BstENI	CCTNNNNNAGG	1 cut(s)	868
BstF5I	GGATG	5 cut(s)	35, 482, 794, 865, 1150
BstKTI	GATC	3 cut(s)	747, 829, 949
BstMAI	GTCTC	2 cut(s)	997, 1122
BstMBI	GATC	3 cut(s)	744, 826, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	590, 698, 896, 974
BstNI	CCWGG	4 cut(s)	18, 755, 824, 1029
BstSCI	CCNGG	5 cut(s)	16, 127, 753, 822, 1027
BstSFI	CTRYAG	1 cut(s)	626
BstSLI	GKGCMC	1 cut(s)	730
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	2 cut(s)	826, 946
BstYI	RGATCY	2 cut(s)	826, 946
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	669
BtgZI	GCGATG	1 cut(s)	983
BtsCI	GGATG	5 cut(s)	35, 482, 794, 865, 1150
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	582, 586
Cfr13I	GGNCC	2 cut(s)	68, 344
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	6 cut(s)	275, 458, 590, 670, 982, 1177
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	383, 471, 891
DpnI	GATC	3 cut(s)	746, 828, 948
DpnII	GATC	3 cut(s)	744, 826, 946
DriI	GACNNNNNGTC	1 cut(s)	1010
Eam1104I	CTCTTC	1 cut(s)	837
Eam1105I	GACNNNNNGTC	1 cut(s)	1010
EarI	CTCTTC	1 cut(s)	837
Ecl136II	GAGCTC	2 cut(s)	416, 523
Eco130I	CCWWGG	2 cut(s)	669, 864
Eco24I	GRGCYC	2 cut(s)	418, 525
Eco31I	GGTCTC	1 cut(s)	1122
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	2 cut(s)	416, 523
Eco57I	CTGAAG	1 cut(s)	950
EcoICRI	GAGCTC	2 cut(s)	416, 523
EcoNI	CCTNNNNNAGG	1 cut(s)	868
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	4 cut(s)	16, 753, 822, 1027
EcoT14I	CCWWGG	2 cut(s)	669, 864
EcoT22I	ATGCAT	1 cut(s)	848
EcoT38I	GRGCYC	2 cut(s)	418, 525
ErhI	CCWWGG	2 cut(s)	669, 864
FaeI	CATG	6 cut(s)	278, 461, 593, 673, 985, 1180
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	6 cut(s)	274, 457, 589, 669, 981, 1176
FauNDI	CATATG	1 cut(s)	1105
FblI	GTMKAC	2 cut(s)	148, 1085
FokI	GGATG	5 cut(s)	22, 489, 781, 872, 1157
FriOI	GRGCYC	2 cut(s)	418, 525
FspBI	CTAG	2 cut(s)	192, 870
GsaI	CCCAGC	1 cut(s)	889
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	3 cut(s)	129, 555, 656
Hin1II	CATG	6 cut(s)	278, 461, 593, 673, 985, 1180
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HinfI	GANTC	6 cut(s)	13, 188, 609, 893, 911, 1187
HpaII	CCGG	3 cut(s)	129, 555, 656
HphI	GGTGA	2 cut(s)	515, 812
Hpy166II	GTNNAC	4 cut(s)	149, 778, 876, 1086
Hpy188I	TCNGA	3 cut(s)	79, 271, 799
Hpy188III	TCNNGA	7 cut(s)	231, 347, 401, 411, 617, 1015, 1124
Hpy8I	GTNNAC	4 cut(s)	149, 778, 876, 1086
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	160, 546
HpyCH4V	TGCA	8 cut(s)	52, 423, 584, 593, 628, 794, 846, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	590, 698, 896, 974
HpyF3I	CTNAG	3 cut(s)	383, 471, 891
Hsp92II	CATG	6 cut(s)	278, 461, 593, 673, 985, 1180
Kzo9I	GATC	3 cut(s)	744, 826, 946
LmnI	GCTCC	5 cut(s)	130, 289, 413, 520, 1099
LweI	GCATC	2 cut(s)	803, 850
MaeI	CTAG	2 cut(s)	192, 870
MaeIII	GTNAC	2 cut(s)	437, 664
MalI	GATC	3 cut(s)	746, 828, 948
MboI	GATC	3 cut(s)	744, 826, 946
MfeI	CAATTG	2 cut(s)	220, 366
MflI	RGATCY	2 cut(s)	826, 946
MhlI	GDGCHC	3 cut(s)	418, 525, 730
MluCI	AATT	9 cut(s)	168, 200, 220, 350, 366, 376, 465, 1032, 1149
MlyI	GAGTC	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	848
MseI	TTAA	7 cut(s)	84, 113, 198, 516, 704, 740, 837
MslI	CAYNNNNRTG	3 cut(s)	57, 428, 501
MspCI	CTTAAG	2 cut(s)	739, 836
MspI	CCGG	3 cut(s)	129, 555, 656
MspR9I	CCNGG	5 cut(s)	18, 129, 755, 824, 1029
MunI	CAATTG	2 cut(s)	220, 366
MvaI	CCWGG	4 cut(s)	18, 755, 824, 1029
MwoI	GCNNNNNNNGC	4 cut(s)	590, 698, 896, 974
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	669
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	3 cut(s)	744, 826, 946
NlaIII	CATG	6 cut(s)	278, 461, 593, 673, 985, 1180
NlaIV	GGNNCC	3 cut(s)	828, 948, 1101
NmuCI	GTSAC	2 cut(s)	437, 664
NsiI	ATGCAT	1 cut(s)	848
NspV	TTCGAA	1 cut(s)	354
PfeI	GAWTC	5 cut(s)	13, 188, 609, 911, 1187
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	885
PfoI	TCCNGGA	1 cut(s)	127
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Psp124BI	GAGCTC	2 cut(s)	418, 525
Psp6I	CCWGG	4 cut(s)	16, 753, 822, 1027
PspFI	CCCAGC	1 cut(s)	885
PspGI	CCWGG	4 cut(s)	16, 753, 822, 1027
PspN4I	GGNNCC	3 cut(s)	828, 948, 1101
PspPI	GGNCC	2 cut(s)	68, 344
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	2 cut(s)	826, 946
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	3 cut(s)	57, 428, 501
SacI	GAGCTC	2 cut(s)	418, 525
SaqAI	TTAA	7 cut(s)	84, 113, 198, 516, 704, 740, 837
Sau3AI	GATC	3 cut(s)	744, 826, 946
Sau96I	GGNCC	2 cut(s)	68, 344
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	5 cut(s)	18, 129, 755, 824, 1029
SduI	GDGCHC	3 cut(s)	418, 525, 730
SfaNI	GCATC	2 cut(s)	803, 850
SfcI	CTRYAG	1 cut(s)	626
SfuI	TTCGAA	1 cut(s)	354
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	3 cut(s)	57, 428, 501
SmlI	CTYRAG	3 cut(s)	524, 739, 836
SmoI	CTYRAG	3 cut(s)	524, 739, 836
Sse9I	AATT	9 cut(s)	168, 200, 220, 350, 366, 376, 465, 1032, 1149
SsiI	CCGC	1 cut(s)	568
SspMI	CTAG	2 cut(s)	192, 870
SstI	GAGCTC	2 cut(s)	418, 525
StyD4I	CCNGG	5 cut(s)	16, 127, 753, 822, 1027
StyI	CCWWGG	2 cut(s)	669, 864
TaaI	ACNGT	2 cut(s)	160, 546
TaqI	TCGA	3 cut(s)	11, 186, 354
TasI	AATT	9 cut(s)	168, 200, 220, 350, 366, 376, 465, 1032, 1149
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	5 cut(s)	13, 188, 609, 911, 1187
Tru1I	TTAA	7 cut(s)	84, 113, 198, 516, 704, 740, 837
Tru9I	TTAA	7 cut(s)	84, 113, 198, 516, 704, 740, 837
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	437, 664
Tsp45I	GTSAC	2 cut(s)	437, 664
TspDTI	ATGAA	7 cut(s)	75, 477, 485, 970, 1122, 1161, 1193
TspGWI	ACGGA	1 cut(s)	1103
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	885
Vha464I	CTTAAG	2 cut(s)	739, 836
VpaK11BI	GGWCC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	868
XapI	RAATTY	4 cut(s)	200, 350, 376, 465
XmiI	GTMKAC	2 cut(s)	148, 1085
XspI	CTAG	2 cut(s)	192, 870
Zsp2I	ATGCAT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.