Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012034.1

Orthogroup ID

OG0002475

Physical Location & Seq

Genomic Coordinates Forward (+)

8244 .. 13945

Gene Structure 5702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atggcctcttcaaggaaatgggcaaccaccatatccttcgctgcttcgtgtatctatttcactgtcatcatcattcagattcctcttttcagtgtcccgtgtagatctggaacatgtacatcaccaatagcagtcacagcccctcatctgatggcatgtgatctgtttcctttagttgcaataaaagcactagtctacccaggtgccattgcgaatgcattggtgaaaaatgaagcaattccaagctatagtaacttgaagttacatgacccctctgctgtaaaggcagctgatgcaattgctgatctgcagcgcctagaggttagtacgtttataacatttctctcaactggatgtgatgttgctgaaaactctattgtatctgcttttcagtacagaactctcacattgagcagtctaagtcttagacttgttcactggagtaagaatggagaaagttgccctccttttattctatgctctgatcctgtgttaaataaagagctattattgacagagagaagctccttaccttggcttgacagtaaaaatgaacgaactaaacttgatcctacttcagttgtggagaatctgaggagtaagaggatttatcttgaaaattctggtgctcgttgcatagtaatgccttgtcatatttcacattcttggcataatgaaatatctgatggatgttctgttcctttcctccatatgggtgagtgtgttgccaaggagctcaaggaagcaaagttgaagccactggaagccaggagtcctttgcggattggagtgcttgctacaaatgcaactttgacagcaggattctatcaggagaaactgaaaagggagggatttgaggttgtgttgccagataaagcgaccatggaacacactgtcatccctgctattgaagcttttaatagaaaagacatagaggggtcacaaaatcttttgaggattgcactccaggttcttctggtgagggctgtgaactctgtgattcttgcctttgatgatatgcatgatctccttccccgagatgatcctcttattaagaaatgcattgaccctatggatgcattggcctggtcaaccataaaatgggctacatctgctgaaaaaggtacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_Glu_race

Protein Analysis

376

Amino Acids

41.39

Weight (kDa)

7.08

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15410 AT1G15410
fragaria_vesca	FvH4_1g03590 FvH4_1g03590 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270 FvH4_6g30270
malus_domestica	MD02G1035500.v1.1 MD17G1205400.v1.1 MD17G1205900.v1.1
prunus_persica	Prupe.3G081000_v2.0.a1 Prupe.7G239700_v2.0.a1 Prupe.7G239700_v2.0.a1
pyrus_communis	pycom02g02920 pycom17g20920
rosa_chinensis	RchiOBHm_Chr2g0089121 RchiOBHm_Chr2g0136511
rosa_laevigata	RLG00000015993 RLG00000019538
rosa_multiflora	Rmu_sc0012034.1_g000001 Rmu_sc0016750.1_g000005 Rmu_sc0035394.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108210 Rroxscaffold_2G00152230
rosa_rugosa	Rorug01G0487500 Rorug02G0331500 Rorug02G0331600
rosa_samantha	Rh2AG043100 Rh2AG382400 Rh2BG041600 Rh2BG389000 Rh2CG043300 Rh2CG368700 Rh2DG042300 Rh2DG405700
rosa_wichuraiana	Rw2G003450 Rw2G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	1101
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	1 cut(s)	781
AclWI	GGATC	3 cut(s)	479, 563, 1037
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	4 cut(s)	118, 328, 395, 1126
AfiI	CCNNNNNNNGG	4 cut(s)	12, 534, 712, 1101
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	5 cut(s)	12, 259, 617, 754, 911
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	4 cut(s)	199, 767, 966, 1085
AloI	GAACNNNNNNTCC	2 cut(s)	681, 713
AluBI	AGCT	6 cut(s)	246, 290, 505, 525, 736, 914
AluI	AGCT	6 cut(s)	246, 290, 505, 525, 736, 914
Alw21I	GWGCWC	2 cut(s)	631, 738
AlwI	GGATC	3 cut(s)	479, 563, 1037
Ama87I	CYCGRG	1 cut(s)	1035
AoxI	GGCC	2 cut(s)	3, 1083
ApeKI	GCWGC	3 cut(s)	41, 287, 310
ApoI	RAATTY	1 cut(s)	619
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	315
AsuHPI	GGTGA	4 cut(s)	114, 235, 728, 991
AvaI	CYCGRG	1 cut(s)	1035
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	738
Bbv12I	GWGCWC	2 cut(s)	631, 738
BbvI	GCAGC	3 cut(s)	28, 299, 322
BccI	CCATC	2 cut(s)	145, 680
BciT130I	CCWGG	4 cut(s)	201, 769, 968, 1087
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	2 cut(s)	191, 317
BfmI	CTRYAG	2 cut(s)	247, 308
BfoI	RGCGCY	1 cut(s)	316
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	3 cut(s)	42, 288, 311
BlsI	GCNGC	3 cut(s)	43, 289, 312
Bme1390I	CCNGG	4 cut(s)	201, 769, 968, 1087
BmeT110I	CYCGRG	1 cut(s)	1035
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	4 cut(s)	201, 769, 968, 1087
BmsI	GCATC	2 cut(s)	283, 1066
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	2 cut(s)	460, 950
BpuEI	CTTGAG	1 cut(s)	722
BsaJI	CCNNGG	4 cut(s)	199, 533, 729, 882
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 534, 712, 1101
Bse1I	ACTGG	3 cut(s)	355, 443, 765
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	4 cut(s)	201, 769, 968, 1087
BseDI	CCNNGG	4 cut(s)	199, 533, 729, 882
BseGI	GGATG	4 cut(s)	359, 695, 897, 1081
BseLI	CCNNNNNNNGG	4 cut(s)	12, 534, 712, 1101
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	3 cut(s)	355, 443, 765
BseRI	GAGGAG	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	28, 299, 322
BshFI	GGCC	2 cut(s)	5, 1085
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	631, 738
BsiHKCI	CYCGRG	1 cut(s)	1035
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	12, 534, 712, 1101
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	5, 1085
BsoBI	CYCGRG	1 cut(s)	1035
Bsp1286I	GDGCHC	2 cut(s)	631, 738
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	1 cut(s)	781
BspANI	GGCC	2 cut(s)	5, 1085
BspCNI	CTCAG	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	3 cut(s)	479, 563, 1037
BspT107I	GGYRCC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	3 cut(s)	355, 443, 765
BssECI	CCNNGG	4 cut(s)	199, 533, 729, 882
BssMI	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
BssT1I	CCWWGG	3 cut(s)	533, 729, 882
Bst2UI	CCWGG	4 cut(s)	201, 769, 968, 1087
Bst4CI	ACNGT	3 cut(s)	64, 545, 895
Bst6I	CTCTTC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	3 cut(s)	419, 425, 593
BstDSI	CCRYGG	1 cut(s)	882
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	359, 695, 897, 1081
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	7 cut(s)	107, 163, 307, 487, 571, 1027, 1045
BstMBI	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 185, 284, 293, 803, 911, 1112
BstNI	CCWGG	4 cut(s)	201, 769, 968, 1087
BstNSI	RCATGY	2 cut(s)	117, 159
BstSCI	CCNGG	4 cut(s)	199, 767, 966, 1085
BstSFI	CTRYAG	2 cut(s)	247, 308
BstV1I	GCAGC	3 cut(s)	28, 299, 322
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	5, 1085
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	4 cut(s)	359, 695, 897, 1081
BtsIMutI	CAGTG	5 cut(s)	60, 97, 436, 758, 891
Cac8I	GCNNGC	1 cut(s)	795
CfoI	GCGC	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	117, 327, 394, 1125
CviAII	CATG	6 cut(s)	114, 156, 266, 883, 1022, 1128
CviQI	GTAC	4 cut(s)	117, 327, 394, 1125
DdeI	CTNAG	3 cut(s)	419, 425, 593
DpnI	GATC	7 cut(s)	106, 162, 306, 486, 570, 1026, 1044
DpnII	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	736
Eco130I	CCWWGG	3 cut(s)	533, 729, 882
Eco24I	GRGCYC	1 cut(s)	738
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	1035
EcoICRI	GAGCTC	1 cut(s)	736
EcoNI	CCTNNNNNAGG	1 cut(s)	10
EcoRII	CCWGG	4 cut(s)	199, 767, 966, 1085
EcoT14I	CCWWGG	3 cut(s)	533, 729, 882
EcoT22I	ATGCAT	4 cut(s)	220, 1023, 1064, 1081
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	3 cut(s)	533, 729, 882
FaeI	CATG	6 cut(s)	117, 159, 269, 886, 1025, 1131
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	6 cut(s)	113, 155, 265, 882, 1021, 1127
FauNDI	CATATG	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	42, 288, 311
FokI	GGATG	4 cut(s)	366, 702, 884, 1088
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	3 cut(s)	42, 288, 311
FspBI	CTAG	2 cut(s)	191, 317
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	3 cut(s)	42, 288, 311
GsuI	CTGGAG	2 cut(s)	460, 950
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	5, 1085
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	6 cut(s)	117, 159, 269, 886, 1025, 1131
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	1092
HindII	GTYRAC	1 cut(s)	1092
HindIII	AAGCTT	1 cut(s)	912
HinfI	GANTC	5 cut(s)	79, 589, 772, 822, 1000
HphI	GGTGA	4 cut(s)	114, 235, 728, 991
Hpy166II	GTNNAC	4 cut(s)	196, 436, 991, 1092
Hpy188I	TCNGA	5 cut(s)	78, 150, 484, 594, 685
Hpy188III	TCNNGA	3 cut(s)	108, 614, 830
Hpy8I	GTNNAC	4 cut(s)	196, 436, 991, 1092
HpyAV	CCTTC	2 cut(s)	46, 1040
HpyCH4III	ACNGT	3 cut(s)	64, 545, 895
HpyCH4IV	ACGT	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 185, 284, 293, 803, 911, 1112
HpyF3I	CTNAG	3 cut(s)	419, 425, 593
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	6 cut(s)	117, 159, 269, 886, 1025, 1131
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
LmnI	GCTCC	2 cut(s)	530, 733
Lsp1109I	GCAGC	3 cut(s)	28, 299, 322
LweI	GCATC	2 cut(s)	283, 1066
MaeI	CTAG	2 cut(s)	191, 317
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	4 cut(s)	133, 251, 261, 939
MalI	GATC	7 cut(s)	106, 162, 306, 486, 570, 1026, 1044
MboI	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
MboII	GAAGA	1 cut(s)	965
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	631, 738
MluCI	AATT	3 cut(s)	237, 297, 619
MlyI	GAGTC	1 cut(s)	781
Mph1103I	ATGCAT	4 cut(s)	220, 1023, 1064, 1081
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	494, 918, 1053
MslI	CAYNNNNRTG	2 cut(s)	641, 714
MspA1I	CMGCKG	1 cut(s)	290
MspR9I	CCNGG	4 cut(s)	201, 769, 968, 1087
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	4 cut(s)	201, 769, 968, 1087
MwoI	GCNNNNNNNGC	7 cut(s)	137, 185, 284, 293, 803, 911, 1112
NcoI	CCATGG	1 cut(s)	882
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
NlaIII	CATG	6 cut(s)	117, 159, 269, 886, 1025, 1131
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	133, 939
NsiI	ATGCAT	4 cut(s)	220, 1023, 1064, 1081
NspI	RCATGY	2 cut(s)	117, 159
PciI	ACATGT	1 cut(s)	113
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	4 cut(s)	79, 589, 822, 1000
PflMI	CCANNNNNTGG	1 cut(s)	1101
PkrI	GCNGC	3 cut(s)	43, 289, 312
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PscI	ACATGT	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	738
Psp6I	CCWGG	4 cut(s)	199, 767, 966, 1085
PspGI	CCWGG	4 cut(s)	199, 767, 966, 1085
PspN4I	GGNNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	4 cut(s)	118, 328, 395, 1126
RsaNI	GTAC	4 cut(s)	117, 327, 394, 1125
RseI	CAYNNNNRTG	2 cut(s)	641, 714
SacI	GAGCTC	1 cut(s)	738
SaqAI	TTAA	3 cut(s)	494, 918, 1053
SatI	GCNGC	3 cut(s)	42, 288, 311
Sau3AI	GATC	7 cut(s)	104, 160, 304, 484, 568, 1024, 1042
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	4 cut(s)	201, 769, 968, 1087
SduI	GDGCHC	2 cut(s)	631, 738
SfaNI	GCATC	2 cut(s)	283, 1066
SfcI	CTRYAG	2 cut(s)	247, 308
SmiMI	CAYNNNNRTG	2 cut(s)	641, 714
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	3 cut(s)	237, 297, 619
SsiI	CCGC	1 cut(s)	781
SspMI	CTAG	2 cut(s)	191, 317
SstI	GAGCTC	1 cut(s)	738
StyD4I	CCNGG	4 cut(s)	199, 767, 966, 1085
StyI	CCWWGG	3 cut(s)	533, 729, 882
TaaI	ACNGT	3 cut(s)	64, 545, 895
TaiI	ACGT	1 cut(s)	332
TasI	AATT	3 cut(s)	237, 297, 619
TatI	WGTACW	2 cut(s)	116, 393
TfiI	GAWTC	4 cut(s)	79, 589, 822, 1000
Tru1I	TTAA	3 cut(s)	494, 918, 1053
Tru9I	TTAA	3 cut(s)	494, 918, 1053
TscAI	CASTG	5 cut(s)	67, 97, 443, 765, 898
TseFI	GTSAC	2 cut(s)	133, 939
TseI	GCWGC	3 cut(s)	41, 287, 310
Tsp45I	GTSAC	2 cut(s)	133, 939
TspDTI	ATGAA	3 cut(s)	246, 567, 690
TspRI	CASTG	5 cut(s)	67, 97, 443, 765, 898
Van91I	CCANNNNNTGG	1 cut(s)	1101
XagI	CCTNNNNNAGG	1 cut(s)	10
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	2 cut(s)	117, 159
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	2 cut(s)	191, 317
Zsp2I	ATGCAT	4 cut(s)	220, 1023, 1064, 1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.