FvH4_1g03590

Asp/Glu/Hydantoin racemase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002475
Physical Location & Seq
Forward (+)
1963227 .. 1965293
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03590.t1

Sequence Viewer

Length: 990 bp
ATGTTCTTCCATACCCAAAATCGTCCAACTTTTCTTCTCGGTGTTCTAACCGTAAACAGAACCCAAAACAGAACCAAATCAAGCCCATCTATAGCTGTACAAGTATCCTCAGTTCTACAAACTAATGGAAAAGGTGGAAATGGGAATGGAAATCTGTCTGATCAACCCAAGAAAGGCATGGCTCTAAAAAAGCGTCAAGTCTCTAATTTTGTACTAAGCCAACCAAACACTGTGGGAATCATAGGAGGAATGTCTGTATATTCTAGCCTACTTTTCTTGGAGAAGCTTGTTTGGTGGAGTTTGAAAGACGGAGGTGAATGCCCTCCTTTCCTTGTGTGCAGTGATACAACACAATACAAAGAGCTTCCGATTCGCAGTTTGTTTCAATCACTCAGGAGAAAATCTACTGAGATCAAATATTCAAGCAACAATTGGGCCATCATTGACAGCTTGTGTCGAAAAAGGGCATTCCTAGAGAACTCTGGGGCTCAATGCATAGTCATGCCATGCCATCTGTCTCATGCTTGGCATGAACAGATTTCTCAGGACTGTTCTTTGAGCTTCCTTCATGTTGGTGAGTGTGTTGCTAGAGAGCTCAGAGAAGCAAAGATGAAGCCACTCGAAGCTGGGAGTAATGTGAGGATTGGGGTGCTTGCTGCTGATGCAACTTTAACAGCTGGTTTTTACCAGCAGAAGCTAAGAAATCAGGGCTTTGAGGTTGTTGAACCAGACAAAGCAACAATGGAACATGTCATGATTCCTGCAATCGAGGCATTGAAGAGAAGGGACATGGAAGGGGCACGCAATCTGTTAAGAATCGCGGTGCAGGTTCTGTTGGTGAGGGGAGTGAACATTGTCATCATCGCTGCTGATGAATTGCAGGGTGTTCTGCCTCATGATGATCCTCTTCTTAAGAAATGTATTGATCCCATGGATGCCTTGGCCAGGTCAACCATAAAATGGGCAAAGGGCACAGGAAACGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_Glu_race

Protein Analysis

330

Amino Acids

36.32

Weight (kDa)

9.34

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp_Glu_race PF01177 81 - 317 1.9e-23 Asp/Glu/Hydantoin racemase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 817
AccB7I CCANNNNNTGG 1 cut(s) 960
AccII CGCG 1 cut(s) 821
AciI CCGC 1 cut(s) 821
AclWI GGATC 2 cut(s) 896, 920
AcoI YGGCCR 1 cut(s) 942
AfaI GTAC 2 cut(s) 99, 213
AfiI CCNNNNNNNGG 3 cut(s) 173, 945, 960
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 5 cut(s) 304, 386, 423, 725, 778
AjnI CCWGG 1 cut(s) 944
AluBI AGCT 9 cut(s) 95, 286, 364, 450, 561, 595, 626, 677, 697
AluI AGCT 9 cut(s) 95, 286, 364, 450, 561, 595, 626, 677, 697
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 2 cut(s) 205, 522
AlwI GGATC 2 cut(s) 896, 920
AlwNI CAGNNNCTG 1 cut(s) 832
AoxI GGCC 2 cut(s) 435, 942
ApeKI GCWGC 2 cut(s) 656, 866
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 326, 587, 850
BaeGI GKGCMC 2 cut(s) 802, 974
BalI TGGCCA 1 cut(s) 944
BanII GRGCYC 2 cut(s) 490, 597
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 643, 853
BccI CCATC 3 cut(s) 94, 446, 519
BciT130I CCWGG 1 cut(s) 946
BciVI GTATCC 1 cut(s) 115
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 205, 522
BfaI CTAG 3 cut(s) 264, 473, 588
BfmI CTRYAG 1 cut(s) 90
BfrI CTTAAG 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 817
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 2 cut(s) 657, 867
BlsI GCNGC 2 cut(s) 658, 868
Bme1390I CCNGG 1 cut(s) 946
BmgT120I GGNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 946
BmsI GCATC 2 cut(s) 652, 925
BsaJI CCNNGG 2 cut(s) 930, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 945, 960
BseBI CCWGG 1 cut(s) 946
BseDI CCNNGG 2 cut(s) 930, 939
BseGI GGATG 1 cut(s) 940
BseLI CCNNNNNNNGG 3 cut(s) 173, 945, 960
BseMII CTCAG 5 cut(s) 123, 399, 406, 557, 610
BseSI GKGCMC 2 cut(s) 802, 974
BseXI GCAGC 2 cut(s) 643, 853
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 2 cut(s) 358, 845
Bsh1236I CGCG 1 cut(s) 821
BshFI GGCC 2 cut(s) 437, 944
BsiHKAI GWGCWC 1 cut(s) 597
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 3 cut(s) 173, 945, 960
BsmAI GTCTC 2 cut(s) 205, 522
BsmFI GGGAC 1 cut(s) 800
BsmI GAATGC 2 cut(s) 323, 467
BsnI GGCC 2 cut(s) 437, 944
Bsp1286I GDGCHC 4 cut(s) 490, 597, 802, 974
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 4 cut(s) 160, 411, 901, 925
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 1 cut(s) 821
BspANI GGCC 2 cut(s) 437, 944
BspCNI CTCAG 5 cut(s) 122, 400, 405, 556, 609
BspFNI CGCG 1 cut(s) 821
BspHI TCATGA 2 cut(s) 753, 895
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 2 cut(s) 896, 920
BspTI CTTAAG 1 cut(s) 911
BsrGI TGTACA 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 930, 939
BssMI GATC 4 cut(s) 160, 411, 901, 925
BssT1I CCWWGG 2 cut(s) 930, 939
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 4 cut(s) 52, 232, 551, 983
Bst6I CTCTTC 2 cut(s) 773, 912
BstAFI CTTAAG 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 654, 802
BstDEI CTNAG 7 cut(s) 109, 215, 392, 408, 543, 596, 698
BstDSI CCRYGG 1 cut(s) 930
BstENI CCTNNNNNAGG 1 cut(s) 943
BstF5I GGATG 1 cut(s) 940
BstFNI CGCG 1 cut(s) 821
BstKTI GATC 4 cut(s) 163, 414, 904, 928
BstMAI GTCTC 2 cut(s) 205, 522
BstMBI GATC 4 cut(s) 160, 411, 901, 925
BstMWI GCNNNNNNNGC 2 cut(s) 662, 770
BstNI CCWGG 1 cut(s) 946
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 944
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 2 cut(s) 802, 974
BstUI CGCG 1 cut(s) 821
BstV1I GCAGC 2 cut(s) 643, 853
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 437, 944
BtgI CCRYGG 1 cut(s) 930
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 1 cut(s) 940
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 228, 346
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 2 cut(s) 654, 802
CaiI CAGNNNCTG 1 cut(s) 832
CciI TCATGA 2 cut(s) 753, 895
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 98, 212
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviQI GTAC 2 cut(s) 98, 212
DdeI CTNAG 7 cut(s) 109, 215, 392, 408, 543, 596, 698
DpnI GATC 4 cut(s) 162, 413, 903, 927
DpnII GATC 4 cut(s) 160, 411, 901, 925
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 2 cut(s) 773, 912
EarI CTCTTC 2 cut(s) 773, 912
Ecl136II GAGCTC 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 930, 939
Eco24I GRGCYC 2 cut(s) 490, 597
Eco53kI GAGCTC 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 595
EcoNI CCTNNNNNAGG 1 cut(s) 943
EcoRII CCWGG 1 cut(s) 944
EcoT14I CCWWGG 2 cut(s) 930, 939
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 2 cut(s) 490, 597
ErhI CCWWGG 2 cut(s) 930, 939
FaqI GGGAC 1 cut(s) 800
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 657, 867
FokI GGATG 1 cut(s) 947
FriOI GRGCYC 2 cut(s) 490, 597
Fsp4HI GCNGC 2 cut(s) 657, 867
FspBI CTAG 3 cut(s) 264, 473, 588
GluI GCNGC 2 cut(s) 657, 867
GsaI CCCAGC 1 cut(s) 630
HaeIII GGCC 2 cut(s) 437, 944
HgaI GACGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 4 cut(s) 237, 370, 757, 816
HphI GGTGA 3 cut(s) 326, 587, 850
Hpy166II GTNNAC 3 cut(s) 55, 850, 951
Hpy188I TCNGA 3 cut(s) 160, 369, 599
Hpy188III TCNNGA 4 cut(s) 394, 545, 754, 896
Hpy8I GTNNAC 3 cut(s) 55, 850, 951
HpyAV CCTTC 3 cut(s) 575, 777, 788
HpyCH4III ACNGT 4 cut(s) 52, 232, 551, 983
HpyCH4V TGCA 6 cut(s) 339, 495, 665, 764, 826, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 662, 770
HpyF3I CTNAG 7 cut(s) 109, 215, 392, 408, 543, 596, 698
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 160, 411, 901, 925
Lsp1109I GCAGC 2 cut(s) 643, 853
LweI GCATC 2 cut(s) 652, 925
MaeI CTAG 3 cut(s) 264, 473, 588
MalI GATC 4 cut(s) 162, 413, 903, 927
MboI GATC 4 cut(s) 160, 411, 901, 925
MboII GAAGA 3 cut(s) 26, 790, 899
MfeI CAATTG 1 cut(s) 430
MhlI GDGCHC 4 cut(s) 490, 597, 802, 974
MlsI TGGCCA 1 cut(s) 944
MluCI AATT 3 cut(s) 205, 430, 875
MluNI TGGCCA 1 cut(s) 944
MmeI TCCRAC 1 cut(s) 50
Mox20I TGGCCA 1 cut(s) 944
Mph1103I ATGCAT 1 cut(s) 497
MscI TGGCCA 1 cut(s) 944
MseI TTAA 3 cut(s) 671, 812, 912
MslI CAYNNNNRTG 2 cut(s) 500, 573
Msp20I TGGCCA 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 911
MspR9I CCNGG 1 cut(s) 946
MunI CAATTG 1 cut(s) 430
Mva1269I GAATGC 2 cut(s) 323, 467
MvaI CCWGG 1 cut(s) 946
MvnI CGCG 1 cut(s) 821
MwoI GCNNNNNNNGC 2 cut(s) 662, 770
NcoI CCATGG 1 cut(s) 930
NdeII GATC 4 cut(s) 160, 411, 901, 925
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 752
PagI TCATGA 2 cut(s) 753, 895
PciI ACATGT 1 cut(s) 748
PctI GAATGC 2 cut(s) 323, 467
PfeI GAWTC 4 cut(s) 237, 370, 757, 816
PflMI CCANNNNNTGG 1 cut(s) 960
PkrI GCNGC 2 cut(s) 658, 868
PscI ACATGT 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 944
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 1 cut(s) 944
PspPI GGNCC 1 cut(s) 435
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PstNI CAGNNNCTG 1 cut(s) 832
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 2 cut(s) 99, 213
RsaNI GTAC 2 cut(s) 98, 212
RseI CAYNNNNRTG 2 cut(s) 500, 573
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 3 cut(s) 671, 812, 912
SatI GCNGC 2 cut(s) 657, 867
Sau3AI GATC 4 cut(s) 160, 411, 901, 925
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 946
SduI GDGCHC 4 cut(s) 490, 597, 802, 974
SfaNI GCATC 2 cut(s) 652, 925
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 500, 573
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 3 cut(s) 205, 430, 875
SsiI CCGC 1 cut(s) 821
SspI AATATT 1 cut(s) 419
SspMI CTAG 3 cut(s) 264, 473, 588
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 944
StyI CCWWGG 2 cut(s) 930, 939
TaaI ACNGT 4 cut(s) 52, 232, 551, 983
TaqI TCGA 3 cut(s) 457, 621, 768
TasI AATT 3 cut(s) 205, 430, 875
TatI WGTACW 2 cut(s) 97, 211
TfiI GAWTC 4 cut(s) 237, 370, 757, 816
Tru1I TTAA 3 cut(s) 671, 812, 912
Tru9I TTAA 3 cut(s) 671, 812, 912
TscAI CASTG 2 cut(s) 235, 346
TseI GCWGC 2 cut(s) 656, 866
TspDTI ATGAA 4 cut(s) 546, 557, 626, 888
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 235, 346
Van91I CCANNNNNTGG 1 cut(s) 960
Vha464I CTTAAG 1 cut(s) 911
XagI CCTNNNNNAGG 1 cut(s) 943
XceI RCATGY 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 937
XspI CTAG 3 cut(s) 264, 473, 588
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.