Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003668.1

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1485

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggctgccttctttcagagactggccaaggccgccccaacagccttgaccgccggcgccggccaatctaagaccggcttccgctttccaatcggagcactcgcggctgtctccggcggaatctcgtatatctactaccagtcgtcggccgattcggtttatctagatgaaatcaaagaacaggctggtccaaaaatcgcacttaatccagataaatggactgaatttaagctccaagacacggcaagagttagccacaatactcaattgttcagatttacatttgacccaaatgccaagttaggtttagatgtggcttcatgcctcatcacaagggctccaattggacaagatgctgaagggaaaccaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

124

Amino Acids

13.33

Weight (kDa)

9.1

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	104
AciI	CCGC	5 cut(s)	33, 51, 82, 104, 117
AcoI	YGGCCR	3 cut(s)	24, 61, 147
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	145, 241
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	13, 115
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	4 cut(s)	24, 30, 61, 147
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	13, 115
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	3 cut(s)	6, 33, 105
BlsI	GCNGC	3 cut(s)	7, 34, 106
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	58, 339
BmsI	GCATC	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 241
Bse118I	RCCGGY	3 cut(s)	53, 59, 74
Bse1I	ACTGG	2 cut(s)	27, 139
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	145, 241
BseNI	ACTGG	2 cut(s)	27, 139
BseX3I	CGGCCG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	26, 32, 63, 149
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	54, 60, 75, 114
BslI	CCNNNNNNNGG	2 cut(s)	145, 241
BsmAI	GTCTC	2 cut(s)	13, 115
BsnI	GGCC	4 cut(s)	26, 32, 63, 149
Bsp1286I	GDGCHC	2 cut(s)	100, 340
BspACI	CCGC	5 cut(s)	33, 51, 82, 104, 117
BspANI	GGCC	4 cut(s)	26, 32, 63, 149
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	58, 339
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	3 cut(s)	53, 59, 74
BsrI	ACTGG	2 cut(s)	27, 139
BssAI	RCCGGY	3 cut(s)	53, 59, 74
BssECI	CCNNGG	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	55, 61
BstDEI	CTNAG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	2 cut(s)	13, 115
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 50, 104
BstUI	CGCG	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	147
BsuRI	GGCC	4 cut(s)	26, 32, 63, 149
Cac8I	GCNNGC	2 cut(s)	55, 61
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	3 cut(s)	53, 59, 74
Cfr13I	GGNCC	1 cut(s)	188
CviAII	CATG	1 cut(s)	321
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	58
EaeI	YGGCCR	3 cut(s)	24, 61, 147
EagI	CGGCCG	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	340
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	324
FaiI	YATR	2 cut(s)	129, 322
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	6, 33, 105
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	6, 33, 105
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	3 cut(s)	6, 33, 105
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	26, 32, 63, 149
HapII	CCGG	4 cut(s)	54, 60, 75, 114
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	120, 152
HpaII	CCGG	4 cut(s)	54, 60, 75, 114
Hpy188I	TCNGA	3 cut(s)	18, 95, 275
Hpy188III	TCNNGA	2 cut(s)	164, 209
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	19, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 50, 104
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	2 cut(s)	53, 59
KroNI	GCCGGC	2 cut(s)	55, 61
LmnI	GCTCC	3 cut(s)	95, 237, 343
LpnPI	CCDG	9 cut(s)	8, 67, 73, 88, 127, 152, 167, 171, 222
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	164
MfeI	CAATTG	2 cut(s)	266, 342
MhlI	GDGCHC	2 cut(s)	100, 340
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	3 cut(s)	224, 266, 342
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	1 cut(s)	335
Mox20I	TGGCCA	1 cut(s)	26
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	2 cut(s)	53, 59
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	2 cut(s)	204, 228
Msp20I	TGGCCA	1 cut(s)	26
MspI	CCGG	4 cut(s)	54, 60, 75, 114
MunI	CAATTG	2 cut(s)	266, 342
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 50, 104
NaeI	GCCGGC	2 cut(s)	55, 61
NarI	GGCGCC	1 cut(s)	57
NgoMIV	GCCGGC	2 cut(s)	53, 59
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	2 cut(s)	58, 339
PdiI	GCCGGC	2 cut(s)	55, 61
PfeI	GAWTC	2 cut(s)	120, 152
PkrI	GCNGC	3 cut(s)	7, 34, 106
PluTI	GGCGCC	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	58, 339
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	204, 228
SatI	GCNGC	3 cut(s)	6, 33, 105
Sau96I	GGNCC	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	100, 340
SetI	ASST	2 cut(s)	234, 307
SfaNI	GCATC	1 cut(s)	343
SfoI	GGCGCC	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	3 cut(s)	224, 266, 342
SsiI	CCGC	5 cut(s)	33, 51, 82, 104, 117
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	27
TasI	AATT	3 cut(s)	224, 266, 342
TauI	GCSGC	2 cut(s)	35, 107
TfiI	GAWTC	2 cut(s)	120, 152
Tru1I	TTAA	2 cut(s)	204, 228
Tru9I	TTAA	2 cut(s)	204, 228
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	183, 309
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.