Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Forward (+)

3222589 .. 3225797

Gene Structure 3209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGCCTTCTTTCAGAGACTGGCCAAGGCCGCCCCAACAGCCTTCACCGCTGCCGCCGGCGCCGGCCAATCTAAGACCGGCTTCCGCTTTCCAATCGGAGCACTCGCGGCTGTCTCCGGCGGAATCTCGTATATCTACTACCAGTCGTCGGCCGATTCGGTTTATCTAGATGAAATCAAAGAACAGGCTGGTCCAAAAATCGCACTTAATCCAGATAAATGGACTGAATTTAAGCTCCAAGACACGGCAAGAGTTAGCCACAATACTCAATTGTTCAGATTTACATTTGACCCAAATGCCAAGTTAGGTTTAGATGTGGCTTCATGCCTCATCACAAGGGCTCCAATTGGACAAGATGCTGAAGGGAAACCAAAATATGTCATACGGCCGTATACTCCTATATCAGATCCAGATTCCAAGGGATACTTTGACTTATTGATTAAGGTGTATCCAGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCAGGCGATGTAGTCGAAGTGAAGGGGCCCATTGAAAAGCTGAGATATGTTCCCAACATGAAGAAACATATTGGCATGATTGCAGGTGGTACTGGTATAACTCCTATGCTTCAGGTCATTGAGGCTATACTTAAAAATCCTGATGACACAACCAAGGTGTCGCTGGTTTATGCTAATGTCTCACCAGATGACATACTACTTAAACAGAAACTTGACATACTTGCAGCTAGCCACCCTAATTTGAAGGTGTTTTACACAGTAGATAATCCAACAAAGAGTTGGAAAGGAGGTAAAGGCTACATATCAAAGGACATGGCAATTAAAGGCTTACCTGGTCCAGCTGAAGATACTCTCATCTTTGTATGCGGTCCTCCTGGAATGATGGAACACATATCTGGTGGCAAGGCTAAAGACTATTCACAAGGAGAGCTCAGGGGCATACTAAAAGAACTTGGTTACACAGAAGAAATGGTTTACAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

325

Amino Acids

35.41

Weight (kDa)

8.87

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	78 - 180	8.1e-26	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	190 - 295	4.3e-31	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	1 cut(s)	110
AciI	CCGC	7 cut(s)	33, 51, 57, 88, 110, 123, 858
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	4 cut(s)	24, 67, 153, 389
AcsI	RAATTY	2 cut(s)	230, 971
AcuI	CTGAAG	3 cut(s)	384, 587, 855
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	151, 247
AgsI	TTSAA	2 cut(s)	527, 736
AjnI	CCWGG	3 cut(s)	493, 823, 865
AluBI	AGCT	6 cut(s)	238, 486, 532, 719, 833, 922
AluI	AGCT	6 cut(s)	238, 486, 532, 719, 833, 922
Alw21I	GWGCWC	2 cut(s)	106, 924
Alw26I	GTCTC	3 cut(s)	13, 121, 676
AlwI	GGATC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	6 cut(s)	24, 30, 67, 153, 389, 518
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	3 cut(s)	5, 53, 716
ApoI	RAATTY	2 cut(s)	230, 971
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	5 cut(s)	194, 518, 519, 827, 860
AsuHPI	GGTGA	2 cut(s)	40, 666
AsuNHI	GCTAGC	1 cut(s)	719
AvaII	GGWCC	3 cut(s)	194, 827, 860
BaeGI	GKGCMC	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	3 cut(s)	346, 522, 924
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
Bbv12I	GWGCWC	2 cut(s)	106, 924
BbvI	GCAGC	2 cut(s)	40, 728
BccI	CCATC	1 cut(s)	868
BceAI	ACGGC	3 cut(s)	264, 376, 404
BciT130I	CCWGG	3 cut(s)	495, 825, 867
BciVI	GTATCC	2 cut(s)	419, 462
BcoDI	GTCTC	3 cut(s)	13, 121, 676
BfaI	CTAG	2 cut(s)	170, 720
BfoI	RGCGCY	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	566
BfuI	GTATCC	2 cut(s)	419, 462
BisI	GCNGC	6 cut(s)	6, 33, 54, 57, 111, 717
BlsI	GCNGC	6 cut(s)	7, 34, 55, 58, 112, 718
Bme1390I	CCNGG	3 cut(s)	495, 825, 867
Bme18I	GGWCC	3 cut(s)	194, 827, 860
BmgT120I	GGNCC	5 cut(s)	194, 518, 519, 827, 860
BmiI	GGNNCC	4 cut(s)	64, 345, 519, 520
BmrFI	CCNGG	3 cut(s)	495, 825, 867
BmsI	GCATC	1 cut(s)	349
BmtI	GCTAGC	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	923
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	27, 420, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 247
Bse118I	RCCGGY	3 cut(s)	59, 65, 80
Bse1I	ACTGG	3 cut(s)	27, 145, 589
BseBI	CCWGG	3 cut(s)	495, 825, 867
BseDI	CCNNGG	3 cut(s)	27, 420, 645
BseLI	CCNNNNNNNGG	2 cut(s)	151, 247
BseMII	CTCAG	2 cut(s)	524, 937
BseNI	ACTGG	3 cut(s)	27, 145, 589
BseSI	GKGCMC	1 cut(s)	522
BseX3I	CGGCCG	2 cut(s)	153, 389
BseXI	GCAGC	2 cut(s)	40, 728
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	2 cut(s)	156, 392
BshFI	GGCC	6 cut(s)	26, 32, 69, 155, 391, 520
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	2 cut(s)	156, 392
BsiHKAI	GWGCWC	2 cut(s)	106, 924
BsiSI	CCGG	4 cut(s)	60, 66, 81, 120
BslI	CCNNNNNNNGG	2 cut(s)	151, 247
BsmAI	GTCTC	3 cut(s)	13, 121, 676
BsnI	GGCC	6 cut(s)	26, 32, 69, 155, 391, 520
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	4 cut(s)	106, 346, 522, 924
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	7 cut(s)	33, 51, 57, 88, 110, 123, 858
BspANI	GGCC	6 cut(s)	26, 32, 69, 155, 391, 520
BspCNI	CTCAG	2 cut(s)	525, 936
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	4 cut(s)	64, 345, 519, 520
BspMI	ACCTGC	1 cut(s)	566
BspOI	GCTAGC	1 cut(s)	723
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	59, 65, 80
BsrI	ACTGG	3 cut(s)	27, 145, 589
BssAI	RCCGGY	3 cut(s)	59, 65, 80
BssECI	CCNNGG	3 cut(s)	27, 420, 645
BssMI	GATC	1 cut(s)	409
BssNAI	GTATAC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	3 cut(s)	27, 420, 645
Bst1107I	GTATAC	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	495, 825, 867
Bst4CI	ACNGT	1 cut(s)	751
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	5 cut(s)	61, 67, 473, 484, 721
BstDEI	CTNAG	3 cut(s)	75, 533, 923
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	3 cut(s)	13, 121, 676
BstMBI	GATC	1 cut(s)	409
BstMCI	CGRYCG	2 cut(s)	156, 392
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 50, 62, 110
BstNI	CCWGG	3 cut(s)	495, 825, 867
BstSCI	CCNGG	3 cut(s)	493, 823, 865
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	40, 728
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	396
BstZI	CGGCCG	2 cut(s)	153, 389
BsuI	GTATCC	2 cut(s)	419, 462
BsuRI	GGCC	6 cut(s)	26, 32, 69, 155, 391, 520
BtgZI	GCGATG	1 cut(s)	513
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	5 cut(s)	61, 67, 473, 484, 721
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	3 cut(s)	59, 65, 80
Cfr13I	GGNCC	5 cut(s)	194, 518, 519, 827, 860
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	4 cut(s)	327, 550, 568, 805
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	3 cut(s)	75, 533, 923
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
EaeI	YGGCCR	4 cut(s)	24, 67, 153, 389
EagI	CGGCCG	2 cut(s)	153, 389
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	922
EclXI	CGGCCG	2 cut(s)	153, 389
Eco130I	CCWWGG	3 cut(s)	27, 420, 645
Eco24I	GRGCYC	3 cut(s)	346, 522, 924
Eco47I	GGWCC	3 cut(s)	194, 827, 860
Eco52I	CGGCCG	2 cut(s)	153, 389
Eco53kI	GAGCTC	1 cut(s)	922
Eco57I	CTGAAG	3 cut(s)	384, 587, 855
EcoICRI	GAGCTC	1 cut(s)	922
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	3 cut(s)	493, 823, 865
EcoT14I	CCWWGG	3 cut(s)	27, 420, 645
EcoT38I	GRGCYC	3 cut(s)	346, 522, 924
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	3 cut(s)	27, 420, 645
FaeI	CATG	4 cut(s)	330, 553, 571, 808
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 413, 445
FatI	CATG	4 cut(s)	326, 549, 567, 804
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	6 cut(s)	6, 33, 54, 57, 111, 717
FriOI	GRGCYC	3 cut(s)	346, 522, 924
Fsp4HI	GCNGC	6 cut(s)	6, 33, 54, 57, 111, 717
FspBI	CTAG	2 cut(s)	170, 720
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	6 cut(s)	6, 33, 54, 57, 111, 717
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	6 cut(s)	26, 32, 69, 155, 391, 520
HapII	CCGG	4 cut(s)	60, 66, 81, 120
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	330, 553, 571, 808
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	3 cut(s)	126, 158, 416
HpaII	CCGG	4 cut(s)	60, 66, 81, 120
HphI	GGTGA	2 cut(s)	40, 666
Hpy166II	GTNNAC	2 cut(s)	396, 967
Hpy188I	TCNGA	4 cut(s)	18, 101, 281, 409
Hpy188III	TCNNGA	5 cut(s)	170, 215, 413, 455, 632
Hpy8I	GTNNAC	2 cut(s)	396, 967
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	6 cut(s)	19, 55, 359, 452, 508, 730
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	3 cut(s)	482, 575, 716
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 50, 62, 110
HpyF3I	CTNAG	3 cut(s)	75, 533, 923
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	330, 553, 571, 808
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
KroI	GCCGGC	2 cut(s)	59, 65
KroNI	GCCGGC	2 cut(s)	61, 67
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	3 cut(s)	101, 243, 349
Lsp1109I	GCAGC	2 cut(s)	40, 728
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	2 cut(s)	170, 720
MaeIII	GTNAC	1 cut(s)	947
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	3 cut(s)	565, 848, 968
MfeI	CAATTG	2 cut(s)	272, 348
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	4 cut(s)	106, 346, 522, 924
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	6 cut(s)	230, 272, 348, 730, 810, 971
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	752, 785
MnlI	CCTC	4 cut(s)	341, 607, 773, 873
Mox20I	TGGCCA	1 cut(s)	26
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	2 cut(s)	59, 65
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	7 cut(s)	210, 234, 444, 488, 624, 693, 813
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	53, 833
MspI	CCGG	4 cut(s)	60, 66, 81, 120
MspR9I	CCNGG	3 cut(s)	495, 825, 867
MunI	CAATTG	2 cut(s)	272, 348
MvaI	CCWGG	3 cut(s)	495, 825, 867
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 50, 62, 110
NaeI	GCCGGC	2 cut(s)	61, 67
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	1 cut(s)	409
NgoMIV	GCCGGC	2 cut(s)	59, 65
NheI	GCTAGC	1 cut(s)	719
NlaIII	CATG	4 cut(s)	330, 553, 571, 808
NlaIV	GGNNCC	4 cut(s)	64, 345, 519, 520
PaqCI	CACCTGC	1 cut(s)	566
PdiI	GCCGGC	2 cut(s)	61, 67
PfeI	GAWTC	3 cut(s)	126, 158, 416
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	6 cut(s)	7, 34, 55, 58, 112, 718
PluTI	GGCGCC	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	924
Psp6I	CCWGG	3 cut(s)	493, 823, 865
PspGI	CCWGG	3 cut(s)	493, 823, 865
PspN4I	GGNNCC	4 cut(s)	64, 345, 519, 520
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	5 cut(s)	194, 518, 519, 827, 860
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	924
SaqAI	TTAA	7 cut(s)	210, 234, 444, 488, 624, 693, 813
SatI	GCNGC	6 cut(s)	6, 33, 54, 57, 111, 717
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	5 cut(s)	194, 518, 519, 827, 860
ScrFI	CCNGG	3 cut(s)	495, 825, 867
SduI	GDGCHC	4 cut(s)	106, 346, 522, 924
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	349
SfoI	GGCGCC	1 cut(s)	64
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	3 cut(s)	194, 827, 860
Sse9I	AATT	6 cut(s)	230, 272, 348, 730, 810, 971
SsiI	CCGC	7 cut(s)	33, 51, 57, 88, 110, 123, 858
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	170, 720
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	3 cut(s)	493, 823, 865
StyI	CCWWGG	3 cut(s)	27, 420, 645
TaaI	ACNGT	1 cut(s)	751
TaqI	TCGA	1 cut(s)	507
TasI	AATT	6 cut(s)	230, 272, 348, 730, 810, 971
TauI	GCSGC	3 cut(s)	35, 59, 113
TfiI	GAWTC	3 cut(s)	126, 158, 416
Tru1I	TTAA	7 cut(s)	210, 234, 444, 488, 624, 693, 813
Tru9I	TTAA	7 cut(s)	210, 234, 444, 488, 624, 693, 813
TseI	GCWGC	3 cut(s)	5, 53, 716
TspDTI	ATGAA	3 cut(s)	189, 315, 566
VpaK11BI	GGWCC	3 cut(s)	194, 827, 860
XapI	RAATTY	2 cut(s)	230, 971
XbaI	TCTAGA	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	2 cut(s)	652, 768
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	2 cut(s)	170, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.