Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Reverse (-)

3427347 .. 3431117

Gene Structure 3771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG043100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTGCCTTCTTTCAGAGACTGGCCAAGGCCGCCCCAACAGCCTTCACAGCTGCGTTCGCCGCCGGCGCCGGTGCCGGCCAATCTAAGCCCGGCTTCCGCTTTCCAATCGGAGCACTCGCGGCTGTCTCCGGCGGAATCTCGTATATCTACTACCAGTCGTCGGCAGATTCGGTTTATCTAGATGAAATCAAAGAACAGGCTGGTCCAAAAATCGCACTTAATCCAGATAAATGGACTGAATTTAAGCTCCAAGACACGGCAAGAGTTAGCCACAATACTCAATTGTTCAGATTTACATTTGACCCAAATGCCAAGTTAGGTTTAGATGTGGCTTCATGCCTCATTACAAGGGCTCCAATTGGACAAGATGCTGAAGGGAAACCAAAATATGTCATACGGCCGTATACTCCTATATCAGATCCAGATTCCAAGGGATACTTTGACTTATTGATTAAGGTGTATCCAGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCAGGCGATGTAGTCGAAGTGAAGGGGCCCATTGAAAAGCTGAGATATGTTCCCAACATGAAGAAACATATTGGCATGATTGCAGGTGGTACTGGTATAACTCCTATGCTTCAGGTCATTGAGGCTATACTTAAAAATCCTGATGACACAACCAAGGTGTCGCTGGTTTATGCTAATGTCTCACCAGATGACATACTGCTTAAACAGAAACTTGACATACTTGCAGCTAGCCACCCTAATTTGAAGGTGTTTTACACAGTAGATAATCCAACAAAGAGTTGGAAAGGAGGTAAAGGCTACATATCAAAGGACATGGCAATTAAAGGCTTACCTGGTCCAGCTGAAGATACTCTCATCCTTGTAAGTGTTATTCGGAAGAGTTGCTCATGTACTTTTTGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

302

Amino Acids

32.71

Weight (kDa)

9.13

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	82 - 184	7e-26	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	194 - 289	2.2e-24	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	578
AccB1I	GGYRCC	2 cut(s)	68, 74
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	1 cut(s)	122
AciI	CCGC	5 cut(s)	33, 63, 100, 122, 135
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	3 cut(s)	24, 79, 401
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	3 cut(s)	396, 599, 867
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	595, 895
AfiI	CCNNNNNNNGG	2 cut(s)	163, 259
AgsI	TTSAA	2 cut(s)	539, 748
AjnI	CCWGG	2 cut(s)	505, 835
AluBI	AGCT	6 cut(s)	53, 250, 498, 544, 731, 845
AluI	AGCT	6 cut(s)	53, 250, 498, 544, 731, 845
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	13, 133, 688
AlwI	GGATC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	5 cut(s)	24, 30, 79, 401, 530
ApaI	GGGCCC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	5, 53, 728
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	206, 530, 531, 839
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	678
AsuNHI	GCTAGC	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	206, 839
BaeGI	GKGCMC	1 cut(s)	534
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	2 cut(s)	68, 74
BanII	GRGCYC	2 cut(s)	358, 534
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	40, 740
BceAI	ACGGC	3 cut(s)	276, 388, 416
BciT130I	CCWGG	2 cut(s)	507, 837
BciVI	GTATCC	2 cut(s)	431, 474
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	13, 133, 688
BfaI	CTAG	2 cut(s)	182, 732
BfoI	RGCGCY	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	578
BfuI	GTATCC	2 cut(s)	431, 474
BisI	GCNGC	6 cut(s)	6, 33, 54, 63, 123, 729
BlsI	GCNGC	6 cut(s)	7, 34, 55, 64, 124, 730
Bme1390I	CCNGG	3 cut(s)	93, 507, 837
Bme18I	GGWCC	2 cut(s)	206, 839
BmgT120I	GGNCC	4 cut(s)	206, 530, 531, 839
BmiI	GGNNCC	5 cut(s)	70, 76, 357, 531, 532
BmrFI	CCNGG	3 cut(s)	93, 507, 837
BmsI	GCATC	1 cut(s)	361
BmtI	GCTAGC	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	27, 432, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 259
Bse118I	RCCGGY	3 cut(s)	65, 71, 77
Bse1I	ACTGG	3 cut(s)	27, 157, 601
BseBI	CCWGG	2 cut(s)	507, 837
BseDI	CCNNGG	3 cut(s)	27, 432, 657
BseGI	GGATG	1 cut(s)	858
BseLI	CCNNNNNNNGG	2 cut(s)	163, 259
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	3 cut(s)	27, 157, 601
BseSI	GKGCMC	1 cut(s)	534
BseX3I	CGGCCG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	40, 740
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	5 cut(s)	26, 32, 81, 403, 532
BshNI	GGYRCC	2 cut(s)	68, 74
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	5 cut(s)	66, 72, 78, 93, 132
BslI	CCNNNNNNNGG	2 cut(s)	163, 259
BsmAI	GTCTC	3 cut(s)	13, 133, 688
BsnI	GGCC	5 cut(s)	26, 32, 81, 403, 532
Bsp120I	GGGCCC	1 cut(s)	530
Bsp1286I	GDGCHC	3 cut(s)	118, 358, 534
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	5 cut(s)	33, 63, 100, 122, 135
BspANI	GGCC	5 cut(s)	26, 32, 81, 403, 532
BspCNI	CTCAG	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	5 cut(s)	70, 76, 357, 531, 532
BspMI	ACCTGC	1 cut(s)	578
BspOI	GCTAGC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	2 cut(s)	68, 74
BsrFI	RCCGGY	3 cut(s)	65, 71, 77
BsrI	ACTGG	3 cut(s)	27, 157, 601
BssAI	RCCGGY	3 cut(s)	65, 71, 77
BssECI	CCNNGG	3 cut(s)	27, 432, 657
BssMI	GATC	1 cut(s)	421
BssNAI	GTATAC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	3 cut(s)	27, 432, 657
Bst1107I	GTATAC	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	507, 837
Bst4CI	ACNGT	1 cut(s)	763
Bst6I	CTCTTC	1 cut(s)	875
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	5 cut(s)	67, 79, 485, 496, 733
BstDEI	CTNAG	2 cut(s)	87, 545
BstF5I	GGATG	1 cut(s)	858
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	3 cut(s)	13, 133, 688
BstMBI	GATC	1 cut(s)	421
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 50, 59, 62, 68, 122
BstNI	CCWGG	2 cut(s)	507, 837
BstSCI	CCNGG	3 cut(s)	91, 505, 835
BstSLI	GKGCMC	1 cut(s)	534
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	40, 740
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	421
BstZ17I	GTATAC	1 cut(s)	408
BstZI	CGGCCG	1 cut(s)	401
BsuI	GTATCC	2 cut(s)	431, 474
BsuRI	GGCC	5 cut(s)	26, 32, 81, 403, 532
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	858
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	5 cut(s)	67, 79, 485, 496, 733
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	3 cut(s)	65, 71, 77
Cfr13I	GGNCC	4 cut(s)	206, 530, 531, 839
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	594, 894
CviAII	CATG	5 cut(s)	339, 562, 580, 817, 891
CviQI	GTAC	2 cut(s)	594, 894
DdeI	CTNAG	2 cut(s)	87, 545
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
EaeI	YGGCCR	3 cut(s)	24, 79, 401
EagI	CGGCCG	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	875
EciI	GGCGGA	1 cut(s)	150
EclXI	CGGCCG	1 cut(s)	401
Eco130I	CCWWGG	3 cut(s)	27, 432, 657
Eco24I	GRGCYC	2 cut(s)	358, 534
Eco47I	GGWCC	2 cut(s)	206, 839
Eco52I	CGGCCG	1 cut(s)	401
Eco57I	CTGAAG	3 cut(s)	396, 599, 867
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	505, 835
EcoT14I	CCWWGG	3 cut(s)	27, 432, 657
EcoT38I	GRGCYC	2 cut(s)	358, 534
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	27, 432, 657
FaeI	CATG	5 cut(s)	342, 565, 583, 820, 894
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 425, 457
FatI	CATG	5 cut(s)	338, 561, 579, 816, 890
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	6 cut(s)	6, 33, 54, 63, 123, 729
FokI	GGATG	1 cut(s)	845
FriOI	GRGCYC	2 cut(s)	358, 534
Fsp4HI	GCNGC	6 cut(s)	6, 33, 54, 63, 123, 729
FspBI	CTAG	2 cut(s)	182, 732
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	6 cut(s)	6, 33, 54, 63, 123, 729
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	26, 32, 81, 403, 532
HapII	CCGG	5 cut(s)	66, 72, 78, 93, 132
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	342, 565, 583, 820, 894
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	3 cut(s)	138, 170, 428
HpaII	CCGG	5 cut(s)	66, 72, 78, 93, 132
HphI	GGTGA	1 cut(s)	678
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	5 cut(s)	18, 113, 293, 421, 879
Hpy188III	TCNNGA	5 cut(s)	182, 227, 425, 467, 644
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	6 cut(s)	19, 55, 371, 464, 520, 742
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4V	TGCA	4 cut(s)	494, 587, 728, 903
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 50, 59, 62, 68, 122
HpyF3I	CTNAG	2 cut(s)	87, 545
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	342, 565, 583, 820, 894
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
KroI	GCCGGC	2 cut(s)	65, 77
KroNI	GCCGGC	2 cut(s)	67, 79
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	3 cut(s)	113, 255, 361
Lsp1109I	GCAGC	2 cut(s)	40, 740
LweI	GCATC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	2 cut(s)	182, 732
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	577, 860, 892
MfeI	CAATTG	2 cut(s)	284, 360
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	3 cut(s)	118, 358, 534
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	5 cut(s)	242, 284, 360, 742, 822
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	69
MmeI	TCCRAC	2 cut(s)	764, 797
MnlI	CCTC	3 cut(s)	353, 619, 785
Mox20I	TGGCCA	1 cut(s)	26
MreI	CGCCGGCG	1 cut(s)	65
MroNI	GCCGGC	2 cut(s)	65, 77
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	53, 845
MspI	CCGG	5 cut(s)	66, 72, 78, 93, 132
MspR9I	CCNGG	3 cut(s)	93, 507, 837
MunI	CAATTG	2 cut(s)	284, 360
MvaI	CCWGG	2 cut(s)	507, 837
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 50, 59, 62, 68, 122
NaeI	GCCGGC	2 cut(s)	67, 79
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	421
NgoMIV	GCCGGC	2 cut(s)	65, 77
NheI	GCTAGC	1 cut(s)	731
NlaIII	CATG	5 cut(s)	342, 565, 583, 820, 894
NlaIV	GGNNCC	5 cut(s)	70, 76, 357, 531, 532
PaqCI	CACCTGC	1 cut(s)	578
PdiI	GCCGGC	2 cut(s)	67, 79
PfeI	GAWTC	3 cut(s)	138, 170, 428
PkrI	GCNGC	6 cut(s)	7, 34, 55, 64, 124, 730
PluTI	GGCGCC	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	505, 835
PspGI	CCWGG	2 cut(s)	505, 835
PspN4I	GGNNCC	5 cut(s)	70, 76, 357, 531, 532
PspOMI	GGGCCC	1 cut(s)	530
PspPI	GGNCC	4 cut(s)	206, 530, 531, 839
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	2 cut(s)	53, 845
RsaI	GTAC	2 cut(s)	595, 895
RsaNI	GTAC	2 cut(s)	594, 894
SaqAI	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
SatI	GCNGC	6 cut(s)	6, 33, 54, 63, 123, 729
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	4 cut(s)	206, 530, 531, 839
ScrFI	CCNGG	3 cut(s)	93, 507, 837
SduI	GDGCHC	3 cut(s)	118, 358, 534
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	361
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	2 cut(s)	65, 71
SinI	GGWCC	2 cut(s)	206, 839
Sse9I	AATT	5 cut(s)	242, 284, 360, 742, 822
SsiI	CCGC	5 cut(s)	33, 63, 100, 122, 135
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	182, 732
StyD4I	CCNGG	3 cut(s)	91, 505, 835
StyI	CCWWGG	3 cut(s)	27, 432, 657
TaaI	ACNGT	1 cut(s)	763
TaqI	TCGA	1 cut(s)	519
TasI	AATT	5 cut(s)	242, 284, 360, 742, 822
TatI	WGTACW	1 cut(s)	893
TauI	GCSGC	3 cut(s)	35, 65, 125
TfiI	GAWTC	3 cut(s)	138, 170, 428
Tru1I	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
Tru9I	TTAA	7 cut(s)	222, 246, 456, 500, 636, 705, 825
TseI	GCWGC	3 cut(s)	5, 53, 728
TspDTI	ATGAA	3 cut(s)	201, 327, 578
VpaK11BI	GGWCC	2 cut(s)	206, 839
XapI	RAATTY	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	2 cut(s)	664, 780
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	2 cut(s)	182, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.