AT5G22040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011391
Physical Location & Seq
Reverse (-)
7296915 .. 7299313
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22040.2

Sequence Viewer

Length: 855 bp
ATGAGAAGACAGGGAAACTTTGCGGACTCATCACCTGCCAGTGCATATGGAGCTGGACAGATACAGGATCCCCATTCTGATTTTCAAGGTCAATTAGAGGCATTCACGCCTGAGAGGGATCAGCCATATTCAGATTCACAAGCTGAGGGTCAATGGAGATGGGAAAGAGATGGCCCTAATATGTCAAGGCCAATGGCTACTGCTGTTTACAATGAAGGACAACAAGGTGTTGATTCATCGAGGACGTATTACCGTGGCCAAATAGATCCAAAATCAGGAATGGAGAAGCAAGGCAGTGATCCAAGAGCTCAACCACAACACCAAGAAAATCCAAAAACCGGTTATGATAATAACCGTGGGGTGCAGACATTTGAAGGTCTTGAACAGAAGTTCATGGATGATATAACAAGACTAGCAAAAGATCAAATCGAAGCAGAGGATGCAGAGATCGCCAGACATCGAGAGAAAATAAACACTATAAACGCTAGATACGAAGAACAGTTAGCTACACTTAGAGCACGGCACACAGGTAAGAGAGAAGAGATCATGAGGAAAGAATCACTAGCTAGGCAGCAACAATTCAAGCAGCAAACCATGGGGATGATGGACCAATACCATCCAAACGTGGTTGGTCAGGCCAATCTAATGCCATCTGGTCATCCCCAAGGCTACATTGGCAGTGCTCAAGATCCAGCGGCTGTGGCGGATGCACCACCAAGATCATATGGCTCAGATCGGTTTGAAGCATACGGAGAGAGAGCTAGGTTTCAGGGAGGAAACAGAGATCACGGGTTCGAGCCTAGGGGTCCATACCCTGGTGGGAATGTCTATGACACCAGCTCACGGTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

32.13

Weight (kDa)

5.71

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 815
AciI CCGC 3 cut(s) 23, 695, 704
AclWI GGATC 6 cut(s) 62, 75, 126, 260, 293, 683
AcoI YGGCCR 1 cut(s) 256
AfiI CCNNNNNNNGG 4 cut(s) 275, 338, 815, 843
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 86, 374, 383, 583, 743
AjnI CCWGG 1 cut(s) 814
AluBI AGCT 7 cut(s) 53, 143, 308, 506, 566, 761, 840
AluI AGCT 7 cut(s) 53, 143, 308, 506, 566, 761, 840
Alw21I GWGCWC 3 cut(s) 310, 520, 685
AlwI GGATC 6 cut(s) 62, 75, 126, 260, 293, 683
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 4 cut(s) 172, 188, 256, 636
ApeKI GCWGC 2 cut(s) 571, 586
AsiGI ACCGGT 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 800
AspS9I GGNCC 3 cut(s) 173, 607, 806
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 2 cut(s) 607, 806
AvrII CCTAGG 1 cut(s) 800
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 3 cut(s) 310, 520, 685
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 583, 598
BccI CCATC 5 cut(s) 153, 164, 598, 624, 658
BceAI ACGGC 1 cut(s) 536
BciT130I CCWGG 1 cut(s) 816
BfaI CTAG 6 cut(s) 413, 486, 563, 567, 762, 801
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 572, 587, 696
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 3 cut(s) 573, 588, 697
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 2 cut(s) 607, 806
BmgT120I GGNCC 3 cut(s) 173, 607, 806
BmiI GGNNCC 2 cut(s) 69, 807
BmrFI CCNGG 1 cut(s) 816
BmsI GCATC 2 cut(s) 430, 697
BpiI GAAGAC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 669
BsaJI CCNNGG 6 cut(s) 253, 355, 594, 664, 800, 814
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 338, 815, 843
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 6 cut(s) 253, 355, 594, 664, 800, 814
BseGI GGATG 6 cut(s) 403, 445, 606, 616, 658, 712
BseLI CCNNNNNNNGG 4 cut(s) 275, 338, 815, 843
BseMII CTCAG 3 cut(s) 102, 135, 744
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 583, 598
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 4 cut(s) 174, 190, 258, 638
BshTI ACCGGT 1 cut(s) 338
BsiHKAI GWGCWC 3 cut(s) 310, 520, 685
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 4 cut(s) 275, 338, 815, 843
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 4 cut(s) 174, 190, 258, 638
Bsp1286I GDGCHC 3 cut(s) 310, 520, 685
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 3 cut(s) 23, 695, 704
BspANI GGCC 4 cut(s) 174, 190, 258, 638
BspCNI CTCAG 3 cut(s) 103, 136, 743
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 69, 807
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 6 cut(s) 62, 75, 126, 260, 293, 683
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 6 cut(s) 253, 355, 594, 664, 800, 814
BssT1I CCWWGG 3 cut(s) 594, 664, 800
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 4 cut(s) 254, 356, 501, 846
Bst6I CTCTTC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 440
BstDEI CTNAG 4 cut(s) 111, 144, 512, 730
BstDSI CCRYGG 3 cut(s) 253, 355, 594
BstF5I GGATG 6 cut(s) 403, 445, 606, 616, 658, 712
BstMWI GCNNNNNNNGC 5 cut(s) 50, 440, 449, 675, 701
BstNI CCWGG 1 cut(s) 816
BstSCI CCNGG 1 cut(s) 814
BstV1I GCAGC 2 cut(s) 583, 598
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 3 cut(s) 67, 265, 688
BstYI RGATCY 3 cut(s) 67, 265, 688
BsuRI GGCC 4 cut(s) 174, 190, 258, 638
BtgI CCRYGG 3 cut(s) 253, 355, 594
BtsCI GGATG 6 cut(s) 403, 445, 606, 616, 658, 712
BtsI GCAGTG 2 cut(s) 301, 685
BtsIMutI CAGTG 3 cut(s) 46, 301, 685
BveI ACCTGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 3 cut(s) 173, 607, 806
CspAI ACCGGT 1 cut(s) 338
CviAII CATG 3 cut(s) 394, 547, 595
DdeI CTNAG 4 cut(s) 111, 144, 512, 730
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
EciI GGCGGA 1 cut(s) 719
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 3 cut(s) 594, 664, 800
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 607, 806
Eco53kI GAGCTC 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 3 cut(s) 594, 664, 800
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 3 cut(s) 594, 664, 800
FaeI CATG 3 cut(s) 397, 550, 598
FatI CATG 3 cut(s) 393, 546, 594
FauNDI CATATG 2 cut(s) 46, 724
Fnu4HI GCNGC 3 cut(s) 572, 587, 696
FokI GGATG 6 cut(s) 410, 452, 603, 613, 645, 719
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 3 cut(s) 572, 587, 696
FspBI CTAG 6 cut(s) 413, 486, 563, 567, 762, 801
GluI GCNGC 3 cut(s) 572, 587, 696
HaeIII GGCC 4 cut(s) 174, 190, 258, 638
HapII CCGG 1 cut(s) 339
Hin1II CATG 3 cut(s) 397, 550, 598
HinfI GANTC 4 cut(s) 26, 134, 233, 557
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 79, 133, 733
Hpy188III TCNNGA 5 cut(s) 276, 380, 461, 547, 686
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 209, 368
HpyCH4III ACNGT 4 cut(s) 254, 356, 501, 846
HpyCH4IV ACGT 2 cut(s) 245, 624
HpyCH4V TGCA 4 cut(s) 44, 364, 443, 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 440, 449, 675, 701
HpyF3I CTNAG 4 cut(s) 111, 144, 512, 730
HpySE526I ACGT 2 cut(s) 245, 624
Hsp92II CATG 3 cut(s) 397, 550, 598
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 2 cut(s) 583, 598
LweI GCATC 2 cut(s) 430, 697
MaeI CTAG 6 cut(s) 413, 486, 563, 567, 762, 801
MaeII ACGT 2 cut(s) 245, 624
MboII GAAGA 3 cut(s) 18, 506, 551
MflI RGATCY 3 cut(s) 67, 265, 688
MhlI GDGCHC 3 cut(s) 310, 520, 685
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 2 cut(s) 92, 578
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 7 cut(s) 91, 108, 139, 234, 430, 543, 767
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 599
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 1 cut(s) 816
MwoI GCNNNNNNNGC 5 cut(s) 50, 440, 449, 675, 701
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 2 cut(s) 46, 724
NlaIII CATG 3 cut(s) 397, 550, 598
NlaIV GGNNCC 2 cut(s) 69, 807
PagI TCATGA 1 cut(s) 546
PaqCI CACCTGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PctI GAATGC 1 cut(s) 101
PfeI GAWTC 3 cut(s) 134, 233, 557
PflMI CCANNNNNTGG 1 cut(s) 815
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 3 cut(s) 573, 588, 697
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 814
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 2 cut(s) 69, 807
PspPI GGNCC 3 cut(s) 173, 607, 806
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 3 cut(s) 67, 265, 688
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 310
SatI GCNGC 3 cut(s) 572, 587, 696
Sau96I GGNCC 3 cut(s) 173, 607, 806
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 3 cut(s) 310, 520, 685
SfaNI GCATC 2 cut(s) 430, 697
SinI GGWCC 2 cut(s) 607, 806
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 2 cut(s) 92, 578
SsiI CCGC 3 cut(s) 23, 695, 704
SspMI CTAG 6 cut(s) 413, 486, 563, 567, 762, 801
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 3 cut(s) 594, 664, 800
TaaI ACNGT 4 cut(s) 254, 356, 501, 846
TaiI ACGT 2 cut(s) 248, 627
TaqI TCGA 4 cut(s) 239, 429, 460, 795
TasI AATT 2 cut(s) 92, 578
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 3 cut(s) 134, 233, 557
TscAI CASTG 3 cut(s) 46, 301, 685
TseI GCWGC 2 cut(s) 571, 586
TspDTI ATGAA 3 cut(s) 225, 228, 382
TspGWI ACGGA 1 cut(s) 765
TspRI CASTG 3 cut(s) 46, 301, 685
Van91I CCANNNNNTGG 1 cut(s) 815
VpaK11BI GGWCC 2 cut(s) 607, 806
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 671
XmaJI CCTAGG 1 cut(s) 800
XspI CTAG 6 cut(s) 413, 486, 563, 567, 762, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.