FvH4_3g26150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011391
Physical Location & Seq
Reverse (-)
19026704 .. 19030385
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26150.t2

Sequence Viewer

Length: 897 bp
ATGATGCGACGCCAGCAGGGGCAGTACGCCGGCTGCGATTCCGGCGGCGGCAATTCGTACGGTGGCGCAGCGGCGGCTTCAATTCACCACCATCATCAGAGGATGCAGCAGCAGCAGCCGAGTGGTGGCGGGGCTAGTGATTTTGAAGGACGACTGGAAGCGTTCACACCCGAGAGGGATAGCAATCCTAATCCTAATCCTTACGCTGCTTCGAATCCTGAGGCCCAGTGGAGATGGGAAAGAGATGCTTCCAAACCCTCCAATCCATTGACTCCTCATCTCTTCAATGAAGGGCAAGTGAGTGATACGTCTAGATCCTATTTCCAGGGTCAGAGGTCCGATCCAAAACATGCTTTAGAGACACAGAGCAACAGCGATCCCCGATCTCAACCTCATATTGAAGATATGGACCTTGGGTACGAGGATAAGCCTTCACTACAGTCCTTTGAAGATCTTGAGCAGAAATTCCTTGATGACATTAGGAAACTAACCAAGGAACAGAACGATGCTGAGGATGCAGAAAATGCTAGACACAGAGAGAAAATTGGTACAATCAATACCCAGTATGAAGAACAATTAGCATCACTGCGGTGCCGGCATGCTGGTCGAAGAGATGATTTACTTCGGCGGGAATCAAATGCCCGACAGCATCAATACCAGCAATCTGTGATGGATCGTTACCCCAAAAGCAGCATGGGCTCCTCCGATCTTCATGGTTACAGTGGAATGACAGCCTCAGCTACTGCTGGCGATGCCCGCAGAAGCTACGAAACTGACCAATATGATTCTTACAGAGAGCGGGCTCGATTTCTTGGGGGCTCCCGTGATCATGGGTTTGAACCTAGGGGACCATATCAGGGAGGCCGTGTTTATGATACTGGCTCACGCTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.81

Weight (kDa)

5.96

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 591
AccBSI CCGCTC 1 cut(s) 799
AciI CCGC 9 cut(s) 45, 48, 71, 74, 129, 589, 628, 757, 799
AclWI GGATC 4 cut(s) 309, 335, 371, 681
AcsI RAATTY 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 4 cut(s) 26, 59, 419, 550
AfiI CCNNNNNNNGG 2 cut(s) 125, 857
AgsI TTSAA 6 cut(s) 81, 146, 286, 401, 449, 839
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 589
AluBI AGCT 2 cut(s) 740, 765
AluI AGCT 2 cut(s) 740, 765
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 4 cut(s) 309, 335, 371, 681
AlwNI CAGNNNCTG 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 222, 862
ApeKI GCWGC 8 cut(s) 33, 68, 106, 109, 112, 115, 206, 690
ApoI RAATTY 1 cut(s) 464
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 4 cut(s) 223, 336, 409, 848
AsuHPI GGTGA 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 336, 409, 848
AvrII CCTAGG 1 cut(s) 842
AxyI CCTNAGG 1 cut(s) 219
BanI GGYRCC 1 cut(s) 591
BanII GRGCYC 3 cut(s) 701, 805, 821
BbvCI CCTCAGC 2 cut(s) 510, 736
BbvI GCAGC 8 cut(s) 20, 80, 118, 121, 124, 127, 193, 702
BccI CCATC 3 cut(s) 99, 228, 664
BceAI ACGGC 1 cut(s) 849
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 135, 312, 528, 843
BfmI CTRYAG 1 cut(s) 437
BglII AGATCT 1 cut(s) 451
BlnI CCTAGG 1 cut(s) 842
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 3 cut(s) 336, 409, 848
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 4 cut(s) 223, 336, 409, 848
BmiI GGNNCC 4 cut(s) 593, 700, 820, 849
BmrFI CCNGG 1 cut(s) 326
BmrI ACTGGG 2 cut(s) 220, 556
BmsI GCATC 7 cut(s) 93, 235, 496, 505, 590, 658, 742
BmuI ACTGGG 2 cut(s) 220, 556
Bpu10I CCTNAGC 2 cut(s) 510, 736
Bpu14I TTCGAA 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 10
BsaJI CCNNGG 4 cut(s) 325, 412, 492, 842
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 857
Bse118I RCCGGY 2 cut(s) 29, 594
Bse1I ACTGG 4 cut(s) 159, 226, 562, 883
Bse21I CCTNAGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 4 cut(s) 325, 412, 492, 842
BseGI GGATG 2 cut(s) 108, 520
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 125, 857
BseMII CTCAG 3 cut(s) 210, 501, 750
BseNI ACTGG 4 cut(s) 159, 226, 562, 883
BseRI GAGGAG 2 cut(s) 264, 691
BseXI GCAGC 8 cut(s) 20, 80, 118, 121, 124, 127, 193, 702
BshFI GGCC 2 cut(s) 224, 864
BshNI GGYRCC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 30, 42, 595
BsiWI CGTACG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 861
BslI CCNNNNNNNGG 2 cut(s) 125, 857
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 861
BsnI GGCC 2 cut(s) 224, 864
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 701, 805, 821
Bsp143I GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
BspACI CCGC 9 cut(s) 45, 48, 71, 74, 129, 589, 628, 757, 799
BspANI GGCC 2 cut(s) 224, 864
BspCNI CTCAG 3 cut(s) 211, 502, 749
BspLI GGNNCC 4 cut(s) 593, 700, 820, 849
BspPI GGATC 4 cut(s) 309, 335, 371, 681
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 591
BsrBI CCGCTC 1 cut(s) 799
BsrFI RCCGGY 2 cut(s) 29, 594
BsrI ACTGG 4 cut(s) 159, 226, 562, 883
BssAI RCCGGY 2 cut(s) 29, 594
BssECI CCNNGG 4 cut(s) 325, 412, 492, 842
BssMI GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 3 cut(s) 412, 492, 842
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 62, 441, 722
Bst6I CTCTTC 2 cut(s) 287, 604
BstACI GRCGYC 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 7 cut(s) 14, 31, 596, 600, 748, 757, 801
BstDEI CTNAG 3 cut(s) 219, 510, 736
BstF5I GGATG 2 cut(s) 108, 520
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 8 cut(s) 317, 343, 379, 386, 454, 676, 709, 829
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 353, 602
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 437
BstV1I GCAGC 8 cut(s) 20, 80, 118, 121, 124, 127, 193, 702
BstX2I RGATCY 2 cut(s) 314, 451
BstYI RGATCY 2 cut(s) 314, 451
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 2 cut(s) 224, 864
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 2 cut(s) 108, 520
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 3 cut(s) 233, 584, 727
Cac8I GCNNGC 7 cut(s) 14, 31, 596, 600, 748, 757, 801
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 29, 594
Cfr13I GGNCC 4 cut(s) 223, 336, 409, 848
CseI GACGC 1 cut(s) 18
Csp6I GTAC 4 cut(s) 25, 58, 418, 549
CviAII CATG 5 cut(s) 350, 599, 694, 713, 830
CviQI GTAC 4 cut(s) 25, 58, 418, 549
DdeI CTNAG 3 cut(s) 219, 510, 736
DpnI GATC 8 cut(s) 316, 342, 378, 385, 453, 675, 708, 828
DpnII GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
Eam1104I CTCTTC 2 cut(s) 287, 604
EarI CTCTTC 2 cut(s) 287, 604
Eco130I CCWWGG 3 cut(s) 412, 492, 842
Eco24I GRGCYC 3 cut(s) 701, 805, 821
Eco47I GGWCC 3 cut(s) 336, 409, 848
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 3 cut(s) 412, 492, 842
EcoT38I GRGCYC 3 cut(s) 701, 805, 821
ErhI CCWWGG 3 cut(s) 412, 492, 842
FaeI CATG 5 cut(s) 353, 602, 697, 716, 833
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FaqI GGGAC 1 cut(s) 861
FatI CATG 5 cut(s) 349, 598, 693, 712, 829
FauI CCCGC 4 cut(s) 122, 621, 764, 792
FbaI TGATCA 1 cut(s) 826
FokI GGATG 2 cut(s) 115, 527
FriOI GRGCYC 3 cut(s) 701, 805, 821
FspBI CTAG 4 cut(s) 135, 312, 528, 843
GlaI GCGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 224, 864
HapII CCGG 3 cut(s) 30, 42, 595
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 5 cut(s) 353, 602, 697, 716, 833
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 5 cut(s) 38, 214, 271, 632, 785
HpaII CCGG 3 cut(s) 30, 42, 595
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 99, 333, 340, 706
Hpy188III TCNNGA 3 cut(s) 218, 312, 455
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 3 cut(s) 140, 284, 441
HpyCH4III ACNGT 3 cut(s) 62, 441, 722
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 106, 518
HpyF3I CTNAG 3 cut(s) 219, 510, 736
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 5 cut(s) 353, 602, 697, 716, 833
HspAI GCGC 1 cut(s) 66
KroI GCCGGC 2 cut(s) 29, 594
KroNI GCCGGC 2 cut(s) 31, 596
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
LmnI GCTCC 2 cut(s) 704, 824
Lsp1109I GCAGC 8 cut(s) 20, 80, 118, 121, 124, 127, 193, 702
LweI GCATC 7 cut(s) 93, 235, 496, 505, 590, 658, 742
MaeI CTAG 4 cut(s) 135, 312, 528, 843
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 677, 716
MalI GATC 8 cut(s) 316, 342, 378, 385, 453, 675, 708, 828
MbiI CCGCTC 1 cut(s) 799
MboI GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
MboII GAAGA 6 cut(s) 274, 413, 461, 581, 621, 701
MflI RGATCY 2 cut(s) 314, 451
MhlI GDGCHC 3 cut(s) 701, 805, 821
MluCI AATT 5 cut(s) 52, 81, 464, 543, 575
MlyI GAGTC 1 cut(s) 265
MroNI GCCGGC 2 cut(s) 29, 594
MslI CAYNNNNRTG 1 cut(s) 589
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 30, 42, 595
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
NaeI GCCGGC 2 cut(s) 31, 596
NdeII GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
NgoMIV GCCGGC 2 cut(s) 29, 594
NlaIII CATG 5 cut(s) 353, 602, 697, 716, 833
NlaIV GGNNCC 4 cut(s) 593, 700, 820, 849
NmeAIII GCCGAG 1 cut(s) 144
NspI RCATGY 2 cut(s) 353, 602
NspV TTCGAA 1 cut(s) 212
OliI CACNNNNGTG 1 cut(s) 589
PaeI GCATGC 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdiI GCCGGC 2 cut(s) 31, 596
PfeI GAWTC 4 cut(s) 38, 214, 632, 785
Pfl23II CGTACG 1 cut(s) 57
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspLI CGTACG 1 cut(s) 57
PspN4I GGNNCC 4 cut(s) 593, 700, 820, 849
PspPI GGNCC 4 cut(s) 223, 336, 409, 848
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 314, 451
RsaI GTAC 4 cut(s) 26, 59, 419, 550
RsaNI GTAC 4 cut(s) 25, 58, 418, 549
RseI CAYNNNNRTG 1 cut(s) 589
Sau3AI GATC 8 cut(s) 314, 340, 376, 383, 451, 673, 706, 826
Sau96I GGNCC 4 cut(s) 223, 336, 409, 848
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 3 cut(s) 701, 805, 821
SetI ASST 7 cut(s) 311, 338, 394, 414, 742, 767, 844
SfaNI GCATC 7 cut(s) 93, 235, 496, 505, 590, 658, 742
SfcI CTRYAG 1 cut(s) 437
SfuI TTCGAA 1 cut(s) 212
SinI GGWCC 3 cut(s) 336, 409, 848
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SphI GCATGC 1 cut(s) 602
Sse9I AATT 5 cut(s) 52, 81, 464, 543, 575
SsiI CCGC 9 cut(s) 45, 48, 71, 74, 129, 589, 628, 757, 799
SspMI CTAG 4 cut(s) 135, 312, 528, 843
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 3 cut(s) 412, 492, 842
TaaI ACNGT 3 cut(s) 62, 441, 722
TaiI ACGT 1 cut(s) 311
TaqI TCGA 3 cut(s) 212, 607, 805
TasI AATT 5 cut(s) 52, 81, 464, 543, 575
TauI GCSGC 4 cut(s) 48, 51, 74, 77
TfiI GAWTC 4 cut(s) 38, 214, 632, 785
TscAI CASTG 3 cut(s) 233, 591, 727
TseI GCWGC 8 cut(s) 33, 68, 106, 109, 112, 115, 206, 690
TspDTI ATGAA 3 cut(s) 303, 582, 701
TspRI CASTG 3 cut(s) 233, 591, 727
VpaK11BI GGWCC 3 cut(s) 336, 409, 848
XapI RAATTY 1 cut(s) 464
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 2 cut(s) 353, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XmaJI CCTAGG 1 cut(s) 842
XspI CTAG 4 cut(s) 135, 312, 528, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.