Rh5CG358100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011391
Physical Location & Seq
Forward (+)
42233980 .. 42237711
3732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG358100.1

Sequence Viewer

Length: 930 bp
ATGATGAGACGCCAGCAGGCGCAGTACGCCGGGGATTCAGGCGGCGCCAATTCGTATGGTGGCGGAGGCGGTGGCGCTGCGGCAGCTTCAATGCACCACCACCACCATCATCATCATCAGCAGCAGCAGCAGCAGCCGAGTAGTGTTGGTGCTAGTGATTTTGAAGGACGACTCGAAGCGTTCACACCCGAGAGGGATAGCAATCCTAATCCTAATCCTAATCCATACGCTACTTCTTCCAAACCAGAGGCCCAGTGGAGATGGGAAAGAGATGCACCCAATTCCAAAGCCTCCAATCCATTGACACCTCACATGTTTAGTGAAGGTCAAGTGGGTGATACATCTAGATCCTATTTCCCGGGTCAAAGGTCCGATCCAAAACATGCTTTAGAGACACAGAGCAACAGCGATCCCCGATCTCAACCTCATATTGAAGATATGGACCTTGGGTACGAGGATAAGCCTTCGTCACAGTCCTTTGAAGTTCTGGAGCAGAAATTCCTTGATGACATTAGGAAACTAACCAAGGAACAGAATGATGCTGAGGATGCAGAAAATGCTAGACACAGAGAGAAAATTGGTACAATCAATGCTCAGTATGAAGAACAATTAGCATCACTACGGTGCCAGCATGCTGGCCGTAGAGATGATTTACTTCGGAGGGAATCAAATGCCCGCCAGCATCAATACCAGCAATCCGTGATGGATCGTTACCCTAAAAGCAGCATGGGCTCCTCCGATCTTCATGGTTACAGTGGAATTGCGGCCTCAGCTACTGCTGGCGATACACGCAGAGGCTACGAAACTGACCAATATGATTCTTACAGAGAGCGGGCTCGATTTCTTGGGGGCTCCCGTGATCATGGGTTTGAGCCTAGGGGACCATATCCGGGAGGGCGTGTTTATGATACTGGCTCACGTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

34.72

Weight (kDa)

6.14

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 44, 624
AccBSI CCGCTC 1 cut(s) 832
AciI CCGC 7 cut(s) 42, 63, 69, 80, 676, 764, 832
AclWI GGATC 4 cut(s) 342, 368, 404, 714
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 497
AcyI GRCGYC 2 cut(s) 10, 45
AfaI GTAC 3 cut(s) 26, 452, 583
AfiI CCNNNNNNNGG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 4 cut(s) 90, 164, 434, 482
AleI CACNNNNGTG 1 cut(s) 622
AluBI AGCT 2 cut(s) 86, 773
AluI AGCT 2 cut(s) 86, 773
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 4 cut(s) 342, 368, 404, 714
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 2 cut(s) 188, 358
AoxI GGCC 3 cut(s) 249, 637, 765
ApeKI GCWGC 8 cut(s) 77, 83, 121, 124, 127, 130, 133, 723
ApoI RAATTY 1 cut(s) 497
AspA2I CCTAGG 1 cut(s) 875
AspLEI GCGC 3 cut(s) 22, 47, 77
AspS9I GGNCC 4 cut(s) 250, 369, 442, 881
AsuC2I CCSGG 4 cut(s) 31, 359, 360, 891
AsuHPI GGTGA 1 cut(s) 347
AvaI CYCGRG 2 cut(s) 188, 358
AvaII GGWCC 3 cut(s) 369, 442, 881
AvrII CCTAGG 1 cut(s) 875
BanI GGYRCC 2 cut(s) 44, 624
BanII GRGCYC 3 cut(s) 734, 838, 854
BbvCI CCTCAGC 2 cut(s) 543, 769
BbvI GCAGC 8 cut(s) 64, 95, 133, 136, 139, 142, 145, 735
BccI CCATC 3 cut(s) 114, 255, 697
BceAI ACGGC 1 cut(s) 624
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 4 cut(s) 31, 359, 360, 891
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 4 cut(s) 153, 345, 561, 876
BfoI RGCGCY 2 cut(s) 48, 78
BlnI CCTAGG 1 cut(s) 875
Bme1390I CCNGG 4 cut(s) 31, 359, 360, 891
Bme18I GGWCC 3 cut(s) 369, 442, 881
BmeT110I CYCGRG 2 cut(s) 188, 358
BmgT120I GGNCC 4 cut(s) 250, 369, 442, 881
BmiI GGNNCC 5 cut(s) 46, 626, 733, 853, 882
BmrFI CCNGG 4 cut(s) 31, 359, 360, 891
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 5 cut(s) 262, 529, 538, 623, 691
BmuI ACTGGG 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 509
Bpu10I CCTNAGC 2 cut(s) 543, 769
BpuMI CCSGG 4 cut(s) 31, 359, 360, 891
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 10, 45
BsaJI CCNNGG 5 cut(s) 30, 358, 445, 525, 875
BsaXI ACNNNNNCTCC 2 cut(s) 885, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 890
Bse1I ACTGG 2 cut(s) 253, 916
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 5 cut(s) 30, 358, 445, 525, 875
BseGI GGATG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 890
BseMII CTCAG 3 cut(s) 534, 608, 783
BseNI ACTGG 2 cut(s) 253, 916
BseRI GAGGAG 1 cut(s) 724
BseXI GCAGC 8 cut(s) 64, 95, 133, 136, 139, 142, 145, 735
BshFI GGCC 3 cut(s) 251, 639, 767
BshNI GGYRCC 2 cut(s) 44, 624
BsiHKCI CYCGRG 2 cut(s) 188, 358
BsiSI CCGG 3 cut(s) 30, 359, 890
BslFI GGGAC 1 cut(s) 894
BslI CCNNNNNNNGG 1 cut(s) 890
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 894
BsnI GGCC 3 cut(s) 251, 639, 767
BsoBI CYCGRG 2 cut(s) 188, 358
Bsp1286I GDGCHC 3 cut(s) 734, 838, 854
Bsp143I GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
BspACI CCGC 7 cut(s) 42, 63, 69, 80, 676, 764, 832
BspANI GGCC 3 cut(s) 251, 639, 767
BspCNI CTCAG 3 cut(s) 535, 607, 782
BspLI GGNNCC 5 cut(s) 46, 626, 733, 853, 882
BspPI GGATC 4 cut(s) 342, 368, 404, 714
BspT107I GGYRCC 2 cut(s) 44, 624
BsrBI CCGCTC 1 cut(s) 832
BsrI ACTGG 2 cut(s) 253, 916
BssECI CCNNGG 5 cut(s) 30, 358, 445, 525, 875
BssMI GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
BssNI GRCGYC 2 cut(s) 10, 45
BssT1I CCWWGG 3 cut(s) 445, 525, 875
Bst4CI ACNGT 3 cut(s) 474, 624, 755
BstACI GRCGYC 2 cut(s) 10, 45
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 9 cut(s) 14, 18, 629, 633, 637, 676, 680, 781, 834
BstDEI CTNAG 3 cut(s) 543, 594, 769
BstF5I GGATG 1 cut(s) 553
BstH2I RGCGCY 2 cut(s) 48, 78
BstHHI GCGC 3 cut(s) 22, 47, 77
BstKTI GATC 7 cut(s) 350, 376, 412, 419, 709, 742, 862
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
BstNSI RCATGY 3 cut(s) 316, 386, 635
BstSCI CCNGG 4 cut(s) 29, 357, 358, 889
BstV1I GCAGC 8 cut(s) 64, 95, 133, 136, 139, 142, 145, 735
BstX2I RGATCY 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 3 cut(s) 251, 639, 767
BtsCI GGATG 1 cut(s) 553
BtsIMutI CAGTG 2 cut(s) 260, 760
Cac8I GCNNGC 9 cut(s) 14, 18, 629, 633, 637, 676, 680, 781, 834
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 3 cut(s) 22, 47, 77
Cfr13I GGNCC 4 cut(s) 250, 369, 442, 881
Cfr9I CCCGGG 1 cut(s) 358
CseI GACGC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 25, 451, 582
CviAII CATG 6 cut(s) 313, 383, 632, 727, 746, 863
CviQI GTAC 3 cut(s) 25, 451, 582
DdeI CTNAG 3 cut(s) 543, 594, 769
DinI GGCGCC 1 cut(s) 46
DpnI GATC 7 cut(s) 349, 375, 411, 418, 708, 741, 861
DpnII GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
EaeI YGGCCR 1 cut(s) 637
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 3 cut(s) 445, 525, 875
Eco24I GRGCYC 3 cut(s) 734, 838, 854
Eco47I GGWCC 3 cut(s) 369, 442, 881
Eco88I CYCGRG 2 cut(s) 188, 358
EcoT14I CCWWGG 3 cut(s) 445, 525, 875
EcoT38I GRGCYC 3 cut(s) 734, 838, 854
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 445, 525, 875
FaeI CATG 6 cut(s) 316, 386, 635, 730, 749, 866
FaqI GGGAC 1 cut(s) 894
FatI CATG 6 cut(s) 312, 382, 631, 726, 745, 862
FauI CCCGC 2 cut(s) 683, 825
FbaI TGATCA 1 cut(s) 859
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 3 cut(s) 734, 838, 854
FspBI CTAG 4 cut(s) 153, 345, 561, 876
GlaI GCGC 3 cut(s) 21, 46, 76
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 2 cut(s) 48, 78
HaeIII GGCC 3 cut(s) 251, 639, 767
HapII CCGG 3 cut(s) 30, 359, 890
HgaI GACGC 1 cut(s) 18
HhaI GCGC 3 cut(s) 22, 47, 77
Hin1I GRCGYC 2 cut(s) 10, 45
Hin1II CATG 6 cut(s) 316, 386, 635, 730, 749, 866
Hin6I GCGC 3 cut(s) 20, 45, 75
HinP1I GCGC 3 cut(s) 20, 45, 75
HinfI GANTC 4 cut(s) 35, 171, 665, 818
HpaII CCGG 3 cut(s) 30, 359, 890
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 373, 660, 739
Hpy188III TCNNGA 2 cut(s) 345, 488
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 158, 317, 474
HpyCH4III ACNGT 3 cut(s) 474, 624, 755
HpyCH4IV ACGT 1 cut(s) 919
HpyCH4V TGCA 3 cut(s) 94, 275, 551
HpyF3I CTNAG 3 cut(s) 543, 594, 769
HpySE526I ACGT 1 cut(s) 919
Hsp92I GRCGYC 2 cut(s) 10, 45
Hsp92II CATG 6 cut(s) 316, 386, 635, 730, 749, 866
HspAI GCGC 3 cut(s) 20, 45, 75
KasI GGCGCC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
LmnI GCTCC 3 cut(s) 490, 737, 857
Lsp1109I GCAGC 8 cut(s) 64, 95, 133, 136, 139, 142, 145, 735
LweI GCATC 5 cut(s) 262, 529, 538, 623, 691
MaeI CTAG 4 cut(s) 153, 345, 561, 876
MaeII ACGT 1 cut(s) 919
MaeIII GTNAC 3 cut(s) 468, 710, 749
MalI GATC 7 cut(s) 349, 375, 411, 418, 708, 741, 861
MbiI CCGCTC 1 cut(s) 832
MboI GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
MboII GAAGA 4 cut(s) 228, 446, 614, 734
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 3 cut(s) 734, 838, 854
MluCI AATT 6 cut(s) 49, 280, 497, 576, 608, 759
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 622
MspI CCGG 3 cut(s) 30, 359, 890
MspR9I CCNGG 4 cut(s) 31, 359, 360, 891
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 4 cut(s) 31, 359, 360, 891
NdeII GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
NlaIII CATG 6 cut(s) 316, 386, 635, 730, 749, 866
NlaIV GGNNCC 5 cut(s) 46, 626, 733, 853, 882
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 468
NspI RCATGY 3 cut(s) 316, 386, 635
OliI CACNNNNGTG 1 cut(s) 622
PaeI GCATGC 1 cut(s) 635
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 3 cut(s) 35, 665, 818
PfoI TCCNGGA 1 cut(s) 889
PleI GAGTC 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 165
PscI ACATGT 1 cut(s) 312
PspN4I GGNNCC 5 cut(s) 46, 626, 733, 853, 882
PspPI GGNCC 4 cut(s) 250, 369, 442, 881
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 3 cut(s) 26, 452, 583
RsaNI GTAC 3 cut(s) 25, 451, 582
RseI CAYNNNNRTG 1 cut(s) 622
Sau3AI GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
Sau96I GGNCC 4 cut(s) 250, 369, 442, 881
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 4 cut(s) 31, 359, 360, 891
SduI GDGCHC 3 cut(s) 734, 838, 854
SetI ASST 8 cut(s) 88, 310, 328, 371, 427, 447, 775, 922
SfaNI GCATC 5 cut(s) 262, 529, 538, 623, 691
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 3 cut(s) 369, 442, 881
SmaI CCCGGG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 622
SphI GCATGC 1 cut(s) 635
Sse9I AATT 6 cut(s) 49, 280, 497, 576, 608, 759
SsiI CCGC 7 cut(s) 42, 63, 69, 80, 676, 764, 832
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 4 cut(s) 153, 345, 561, 876
StyD4I CCNGG 4 cut(s) 29, 357, 358, 889
StyI CCWWGG 3 cut(s) 445, 525, 875
TaaI ACNGT 3 cut(s) 474, 624, 755
TaiI ACGT 1 cut(s) 922
TaqI TCGA 2 cut(s) 174, 838
TasI AATT 6 cut(s) 49, 280, 497, 576, 608, 759
TauI GCSGC 3 cut(s) 45, 83, 767
TfiI GAWTC 3 cut(s) 35, 665, 818
TscAI CASTG 2 cut(s) 260, 760
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 8 cut(s) 77, 83, 121, 124, 127, 130, 133, 723
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 2 cut(s) 615, 734
TspGWI ACGGA 1 cut(s) 688
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 2 cut(s) 260, 760
VpaK11BI GGWCC 3 cut(s) 369, 442, 881
XapI RAATTY 1 cut(s) 497
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 3 cut(s) 316, 386, 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XmaI CCCGGG 1 cut(s) 358
XmaJI CCTAGG 1 cut(s) 875
XspI CTAG 4 cut(s) 153, 345, 561, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.