Rh5DG344600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011391
Physical Location & Seq
Forward (+)
47112183 .. 47115943
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG344600.1

Sequence Viewer

Length: 915 bp
ATGATGAGACGCCAGCAGGCGCAGTACGCCGGCGATTCAGGCGGCGCCAATTCGTATGGTGGCGGAGGCGGTGGCGCTGCGGCAGCTTCAATGCACCACCACCACCACCATCATCAGCAGCAGCAGCCGAGTAGTGTTGGTGCTAGTGATTTTGAAGGACGACTCGAAGCGTTCACACCCGAGAGGGATAGCAATCCTAATCCTAATCCATACGCTACTTCTTCCAAACCAGAGGCCCAGTGGAGATGGGAAAGAGATGCATCCAATTCCAAAGCCTCCAATCCATTGACACCTCACATGTTTAGTGAAGGTCAAGTGGGTGATACATCTAGATCCTATTTCCAGGGTCAAAGGTCCGATCCAAAACATGCTTTAGAGACACAGAGCAACAACGATCCCCGATCTCAACCTCATATTGAAGATATGGACCTTGGGTACGAGGATAAGCCTTCGTCACAGTCCTTTGAAGTTCTGGAGCAGAAATTCCTTGATGACATTAGGAAACTAACCAAGGAACAGAATGATGCTGAGGATGCAGAAAATGCTAGACACAGAGAGAAAATTGGTACAATCAATTCTCAGTATGAAGAACAATTAGCATCACTACGGTGCCAGCATGCTGGCCGTAGAGATGATTTACTTCGGAGGGAATCAAATGCCCGGCAGCATCAATACCAGCAATCCATGATGGATTGTTACCCTAAAAGCAGCATGGACTCCTCCGATCTTCATGGTTACAGTGGAATTGCGGCCTCAGCTACTGCTGGCGATACACGCAGAGGCTACGAAACTGACCAATATGATTCTTACAGAGAGCGGGCTCGATTTCTTGGGGGCTCCCGTGATCATGGGTTTGAGCCTAGGGGACCATATCCGGGAGGGCGTGTTTATGATACTGGCTCACGTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

34.21

Weight (kDa)

5.92

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 44, 609
AccBSI CCGCTC 1 cut(s) 817
AciI CCGC 6 cut(s) 42, 63, 69, 80, 749, 817
AclWI GGATC 3 cut(s) 327, 353, 389
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 1 cut(s) 482
AcyI GRCGYC 2 cut(s) 10, 45
AfaI GTAC 3 cut(s) 26, 437, 568
AfiI CCNNNNNNNGG 1 cut(s) 875
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 4 cut(s) 90, 155, 419, 467
AjnI CCWGG 1 cut(s) 342
AleI CACNNNNGTG 1 cut(s) 607
AluBI AGCT 2 cut(s) 86, 758
AluI AGCT 2 cut(s) 86, 758
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 3 cut(s) 327, 353, 389
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 3 cut(s) 234, 622, 750
ApeKI GCWGC 7 cut(s) 77, 83, 118, 121, 124, 664, 708
ApoI RAATTY 1 cut(s) 482
AspA2I CCTAGG 1 cut(s) 860
AspLEI GCGC 3 cut(s) 22, 47, 77
AspS9I GGNCC 4 cut(s) 235, 354, 427, 866
AsuC2I CCSGG 2 cut(s) 661, 876
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 3 cut(s) 354, 427, 866
AvrII CCTAGG 1 cut(s) 860
BanI GGYRCC 2 cut(s) 44, 609
BanII GRGCYC 2 cut(s) 823, 839
BbvCI CCTCAGC 2 cut(s) 528, 754
BbvI GCAGC 7 cut(s) 64, 95, 130, 133, 136, 676, 720
BccI CCATC 3 cut(s) 117, 240, 682
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 1 cut(s) 344
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 2 cut(s) 661, 876
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 4 cut(s) 144, 330, 546, 861
BfoI RGCGCY 2 cut(s) 48, 78
BlnI CCTAGG 1 cut(s) 860
Bme1390I CCNGG 3 cut(s) 344, 661, 876
Bme18I GGWCC 3 cut(s) 354, 427, 866
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 4 cut(s) 235, 354, 427, 866
BmiI GGNNCC 4 cut(s) 46, 611, 838, 867
BmrFI CCNGG 3 cut(s) 344, 661, 876
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 6 cut(s) 247, 269, 514, 523, 608, 676
BmuI ACTGGG 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 494
Bpu10I CCTNAGC 2 cut(s) 528, 754
BpuMI CCSGG 2 cut(s) 661, 876
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 2 cut(s) 10, 45
BsaJI CCNNGG 4 cut(s) 343, 430, 510, 860
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 238, 901
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 4 cut(s) 343, 430, 510, 860
BseGI GGATG 2 cut(s) 260, 538
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMII CTCAG 3 cut(s) 519, 593, 768
BseNI ACTGG 2 cut(s) 238, 901
BseRI GAGGAG 1 cut(s) 709
BseXI GCAGC 7 cut(s) 64, 95, 130, 133, 136, 676, 720
BshFI GGCC 3 cut(s) 236, 624, 752
BshNI GGYRCC 2 cut(s) 44, 609
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 30, 661, 875
BslFI GGGAC 1 cut(s) 879
BslI CCNNNNNNNGG 1 cut(s) 875
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 879
BsnI GGCC 3 cut(s) 236, 624, 752
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 823, 839
Bsp143I GATC 6 cut(s) 332, 358, 394, 401, 724, 844
BspACI CCGC 6 cut(s) 42, 63, 69, 80, 749, 817
BspANI GGCC 3 cut(s) 236, 624, 752
BspCNI CTCAG 3 cut(s) 520, 592, 767
BspLI GGNNCC 4 cut(s) 46, 611, 838, 867
BspPI GGATC 3 cut(s) 327, 353, 389
BspT107I GGYRCC 2 cut(s) 44, 609
BsrBI CCGCTC 1 cut(s) 817
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 238, 901
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 343, 430, 510, 860
BssMI GATC 6 cut(s) 332, 358, 394, 401, 724, 844
BssNI GRCGYC 2 cut(s) 10, 45
BssT1I CCWWGG 3 cut(s) 430, 510, 860
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 459, 609, 740
BstACI GRCGYC 2 cut(s) 10, 45
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 8 cut(s) 14, 18, 31, 614, 618, 622, 766, 819
BstDEI CTNAG 3 cut(s) 528, 579, 754
BstF5I GGATG 2 cut(s) 260, 538
BstH2I RGCGCY 2 cut(s) 48, 78
BstHHI GCGC 3 cut(s) 22, 47, 77
BstKTI GATC 6 cut(s) 335, 361, 397, 404, 727, 847
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 6 cut(s) 332, 358, 394, 401, 724, 844
BstMWI GCNNNNNNNGC 8 cut(s) 26, 39, 83, 124, 533, 542, 755, 774
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 3 cut(s) 301, 371, 620
BstSCI CCNGG 3 cut(s) 342, 659, 874
BstV1I GCAGC 7 cut(s) 64, 95, 130, 133, 136, 676, 720
BstX2I RGATCY 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 620
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 3 cut(s) 236, 624, 752
BtsCI GGATG 2 cut(s) 260, 538
BtsIMutI CAGTG 2 cut(s) 245, 745
Cac8I GCNNGC 8 cut(s) 14, 18, 31, 614, 618, 622, 766, 819
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 3 cut(s) 22, 47, 77
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 4 cut(s) 235, 354, 427, 866
CseI GACGC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 25, 436, 567
CviAII CATG 7 cut(s) 298, 368, 617, 685, 712, 731, 848
CviQI GTAC 3 cut(s) 25, 436, 567
DdeI CTNAG 3 cut(s) 528, 579, 754
DinI GGCGCC 1 cut(s) 46
DpnI GATC 6 cut(s) 334, 360, 396, 403, 726, 846
DpnII GATC 6 cut(s) 332, 358, 394, 401, 724, 844
EaeI YGGCCR 1 cut(s) 622
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 3 cut(s) 430, 510, 860
Eco24I GRGCYC 2 cut(s) 823, 839
Eco47I GGWCC 3 cut(s) 354, 427, 866
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 3 cut(s) 430, 510, 860
EcoT22I ATGCAT 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 823, 839
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 430, 510, 860
FaeI CATG 7 cut(s) 301, 371, 620, 688, 715, 734, 851
FaqI GGGAC 1 cut(s) 879
FatI CATG 7 cut(s) 297, 367, 616, 684, 711, 730, 847
FauI CCCGC 1 cut(s) 810
FbaI TGATCA 1 cut(s) 844
FokI GGATG 2 cut(s) 247, 545
FriOI GRGCYC 2 cut(s) 823, 839
FspBI CTAG 4 cut(s) 144, 330, 546, 861
GlaI GCGC 3 cut(s) 21, 46, 76
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 2 cut(s) 48, 78
HaeIII GGCC 3 cut(s) 236, 624, 752
HapII CCGG 3 cut(s) 30, 661, 875
HgaI GACGC 1 cut(s) 18
HhaI GCGC 3 cut(s) 22, 47, 77
Hin1I GRCGYC 2 cut(s) 10, 45
Hin1II CATG 7 cut(s) 301, 371, 620, 688, 715, 734, 851
Hin6I GCGC 3 cut(s) 20, 45, 75
HinP1I GCGC 3 cut(s) 20, 45, 75
HinfI GANTC 5 cut(s) 35, 162, 650, 716, 803
HpaII CCGG 3 cut(s) 30, 661, 875
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 358, 645, 724
Hpy188III TCNNGA 2 cut(s) 330, 473
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 3 cut(s) 149, 302, 459
HpyCH4III ACNGT 3 cut(s) 459, 609, 740
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 3 cut(s) 94, 260, 536
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 39, 83, 124, 533, 542, 755, 774
HpyF3I CTNAG 3 cut(s) 528, 579, 754
HpySE526I ACGT 1 cut(s) 904
Hsp92I GRCGYC 2 cut(s) 10, 45
Hsp92II CATG 7 cut(s) 301, 371, 620, 688, 715, 734, 851
HspAI GCGC 3 cut(s) 20, 45, 75
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 6 cut(s) 332, 358, 394, 401, 724, 844
LmnI GCTCC 2 cut(s) 475, 842
Lsp1109I GCAGC 7 cut(s) 64, 95, 130, 133, 136, 676, 720
LweI GCATC 6 cut(s) 247, 269, 514, 523, 608, 676
MaeI CTAG 4 cut(s) 144, 330, 546, 861
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 3 cut(s) 453, 695, 734
MalI GATC 6 cut(s) 334, 360, 396, 403, 726, 846
MbiI CCGCTC 1 cut(s) 817
MboI GATC 6 cut(s) 332, 358, 394, 401, 724, 844
MboII GAAGA 4 cut(s) 213, 431, 599, 719
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 823, 839
MluCI AATT 7 cut(s) 49, 265, 482, 561, 574, 593, 744
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 2 cut(s) 156, 710
Mph1103I ATGCAT 1 cut(s) 262
MreI CGCCGGCG 1 cut(s) 29
MroNI GCCGGC 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 607
MspI CCGG 3 cut(s) 30, 661, 875
MspR9I CCNGG 3 cut(s) 344, 661, 876
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 8 cut(s) 26, 39, 83, 124, 533, 542, 755, 774
NaeI GCCGGC 1 cut(s) 31
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 2 cut(s) 661, 876
NdeII GATC 6 cut(s) 332, 358, 394, 401, 724, 844
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 7 cut(s) 301, 371, 620, 688, 715, 734, 851
NlaIV GGNNCC 4 cut(s) 46, 611, 838, 867
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 453
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 3 cut(s) 301, 371, 620
OliI CACNNNNGTG 1 cut(s) 607
PaeI GCATGC 1 cut(s) 620
PciI ACATGT 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 35, 650, 803
PfoI TCCNGGA 1 cut(s) 874
PleI GAGTC 2 cut(s) 156, 710
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 2 cut(s) 156, 710
PscI ACATGT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 46, 611, 838, 867
PspPI GGNCC 4 cut(s) 235, 354, 427, 866
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 3 cut(s) 26, 437, 568
RsaNI GTAC 3 cut(s) 25, 436, 567
RseI CAYNNNNRTG 1 cut(s) 607
Sau3AI GATC 6 cut(s) 332, 358, 394, 401, 724, 844
Sau96I GGNCC 4 cut(s) 235, 354, 427, 866
SchI GAGTC 2 cut(s) 156, 710
ScrFI CCNGG 3 cut(s) 344, 661, 876
SduI GDGCHC 2 cut(s) 823, 839
SetI ASST 8 cut(s) 88, 295, 313, 356, 412, 432, 760, 907
SfaNI GCATC 6 cut(s) 247, 269, 514, 523, 608, 676
SfoI GGCGCC 1 cut(s) 46
SgrAI CRCCGGYG 1 cut(s) 29
SinI GGWCC 3 cut(s) 354, 427, 866
SmiMI CAYNNNNRTG 1 cut(s) 607
SphI GCATGC 1 cut(s) 620
Sse9I AATT 7 cut(s) 49, 265, 482, 561, 574, 593, 744
SsiI CCGC 6 cut(s) 42, 63, 69, 80, 749, 817
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 4 cut(s) 144, 330, 546, 861
StyD4I CCNGG 3 cut(s) 342, 659, 874
StyI CCWWGG 3 cut(s) 430, 510, 860
TaaI ACNGT 3 cut(s) 459, 609, 740
TaiI ACGT 1 cut(s) 907
TaqI TCGA 2 cut(s) 165, 823
TasI AATT 7 cut(s) 49, 265, 482, 561, 574, 593, 744
TauI GCSGC 3 cut(s) 45, 83, 752
TfiI GAWTC 3 cut(s) 35, 650, 803
TscAI CASTG 2 cut(s) 245, 745
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 7 cut(s) 77, 83, 118, 121, 124, 664, 708
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 600, 719
TspRI CASTG 2 cut(s) 245, 745
VpaK11BI GGWCC 3 cut(s) 354, 427, 866
XapI RAATTY 1 cut(s) 482
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 3 cut(s) 301, 371, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XmaJI CCTAGG 1 cut(s) 860
XspI CTAG 4 cut(s) 144, 330, 546, 861
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.