MD11G1174800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011391
Physical Location & Seq
Forward (+)
20539543 .. 20545014
5472 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1174800.v1.1.491

Sequence Viewer

Length: 879 bp
ATGATGAGAAGGCAGGGGCAGGGGCAGGGACAGGGACAGGGACAGTATGGTGATTCGGGTGCGAATGCGTATGCGGCCGGTGCTCCGATCCATCATATGTCCGGTCAAAGGATGGAGCACACGTCTAGTGATTTCGAAGGAAGGATGGAAGCTTTCACTCCACCTCCAGAGACGGACAATCCATATGCAACTTCCAAATCAGACGGCCAATGGGGATGGGAAAGAGATGGATCAAAAGGGTCAAATCCACTCACATCTCATATGTACAATGAAGGTCAAGGAGGTGATACATCAAGATCCTATTTCCAAGGTCAAAGGACTGATTCAAAACATACTTTGGAGAAACAGAGCAACAACGATTCCCGATCTCAACCTCTTAACGAGGAGATGGACCTTGTATATGAGGACAAGCCTTCGTCGCAGACTTTTGAAGATCTTGAGAAGAAGTTCCTTGATGACATTAGAAATCTAGCCAAGGAACAAAGTGATGCTGAGGATGCGGAAAATGCTAGGCATAGAGAGAAAATTGGCGCTGTCAATGCTCAATACCAAGAACAGCTAGCAGCACTTCGGTCACGGCATGCTAAACTCAGAGATGAATTACTTGACAGGGAATCAAATGCCCGACGGCATCAATACCAGCAATCCGTGTTGGATCATTACCCGAACAGCAGCATGGTCCCCTCTGATGATCATGGGTACAGTGGACCTGCAGCCTCGGCTCCTGTTGGCGAAGCACGCCGAGGCTATAATACTGATCAATATGATTCATACAATGAGCGAGCTCGATTTCTTGGAGGTTCTCGGGATCATGGGTTTGAGCCTAGAGGTCCATATCCCGGAGGCCGTGTCTATGATACCGGGTCACGGTACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.85

Weight (kDa)

5.49

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 718
AciI CCGC 2 cut(s) 74, 500
AclWI GGATC 5 cut(s) 82, 238, 291, 663, 816
AcoI YGGCCR 2 cut(s) 75, 205
AfaI GTAC 3 cut(s) 266, 701, 872
AfiI CCNNNNNNNGG 3 cut(s) 108, 839, 867
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 2 cut(s) 327, 431
AjiI CACGTC 1 cut(s) 123
AluBI AGCT 3 cut(s) 152, 559, 785
AluI AGCT 3 cut(s) 152, 559, 785
Alw21I GWGCWC 3 cut(s) 85, 120, 787
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 5 cut(s) 82, 238, 291, 663, 816
Ama87I CYCGRG 1 cut(s) 804
AoxI GGCC 3 cut(s) 75, 205, 844
ApeKI GCWGC 3 cut(s) 563, 672, 713
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 4 cut(s) 391, 679, 707, 830
AsuC2I CCSGG 2 cut(s) 840, 862
AsuHPI GGTGA 2 cut(s) 62, 296
AsuII TTCGAA 1 cut(s) 135
AsuNHI GCTAGC 1 cut(s) 559
AvaI CYCGRG 1 cut(s) 804
AvaII GGWCC 4 cut(s) 391, 679, 707, 830
BanII GRGCYC 1 cut(s) 787
Bbv12I GWGCWC 3 cut(s) 85, 120, 787
BbvCI CCTCAGC 1 cut(s) 492
BbvI GCAGC 3 cut(s) 575, 684, 725
BccI CCATC 6 cut(s) 99, 106, 139, 210, 221, 382
BceAI ACGGC 4 cut(s) 220, 593, 644, 831
BclI TGATCA 2 cut(s) 691, 757
BcnI CCSGG 2 cut(s) 840, 862
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 5 cut(s) 126, 470, 510, 560, 825
BfmI CTRYAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 534
BfuAI ACCTGC 1 cut(s) 718
BglII AGATCT 1 cut(s) 433
BisI GCNGC 4 cut(s) 75, 564, 673, 714
BlsI GCNGC 4 cut(s) 76, 565, 674, 715
Bme1390I CCNGG 2 cut(s) 840, 862
Bme18I GGWCC 4 cut(s) 391, 679, 707, 830
BmeT110I CYCGRG 1 cut(s) 804
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 4 cut(s) 391, 679, 707, 830
BmiI GGNNCC 2 cut(s) 681, 723
BmrFI CCNGG 2 cut(s) 840, 862
BmsI GCATC 3 cut(s) 478, 487, 640
BmtI GCTAGC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 840, 862
BsaJI CCNNGG 4 cut(s) 307, 474, 717, 742
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 6 cut(s) 107, 137, 148, 178, 834, 864
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 839, 867
Bse118I RCCGGY 1 cut(s) 77
BseDI CCNNGG 4 cut(s) 307, 474, 717, 742
BseGI GGATG 4 cut(s) 117, 150, 221, 502
BseLI CCNNNNNNNGG 3 cut(s) 108, 839, 867
BseMII CTCAG 2 cut(s) 483, 604
BseRI GAGGAG 1 cut(s) 398
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 575, 684, 725
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 77, 207, 846
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 3 cut(s) 85, 120, 787
BsiHKCI CYCGRG 1 cut(s) 804
BsiSI CCGG 4 cut(s) 78, 102, 840, 861
BslFI GGGAC 4 cut(s) 42, 48, 54, 665
BslI CCNNNNNNNGG 3 cut(s) 108, 839, 867
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 4 cut(s) 42, 48, 54, 665
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 77, 207, 846
BsoBI CYCGRG 1 cut(s) 804
Bsp119I TTCGAA 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 85, 120, 787
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
BspACI CCGC 2 cut(s) 74, 500
BspANI GGCC 3 cut(s) 77, 207, 846
BspCNI CTCAG 2 cut(s) 484, 603
BspLI GGNNCC 2 cut(s) 681, 723
BspMAI CTGCAG 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 718
BspOI GCTAGC 1 cut(s) 563
BspPI GGATC 5 cut(s) 82, 238, 291, 663, 816
BspT104I TTCGAA 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 4 cut(s) 307, 474, 717, 742
BssMI GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
BssT1I CCWWGG 2 cut(s) 307, 474
Bst4CI ACNGT 3 cut(s) 45, 704, 870
BstAUI TGTACA 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 4 cut(s) 561, 582, 739, 783
BstDEI CTNAG 2 cut(s) 492, 590
BstF5I GGATG 4 cut(s) 117, 150, 221, 502
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 9 cut(s) 90, 233, 299, 368, 436, 658, 694, 760, 811
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 8 cut(s) 74, 80, 418, 497, 506, 539, 719, 738
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 838, 860
BstSFI CTRYAG 1 cut(s) 711
BstV1I GCAGC 3 cut(s) 575, 684, 725
BstX2I RGATCY 2 cut(s) 296, 433
BstYI RGATCY 2 cut(s) 296, 433
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 3 cut(s) 77, 207, 846
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 4 cut(s) 117, 150, 221, 502
BtsIMutI CAGTG 1 cut(s) 709
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 4 cut(s) 561, 582, 739, 783
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 4 cut(s) 391, 679, 707, 830
Csp6I GTAC 3 cut(s) 265, 700, 871
CviAII CATG 4 cut(s) 581, 676, 695, 812
CviQI GTAC 3 cut(s) 265, 700, 871
DdeI CTNAG 2 cut(s) 492, 590
DpnI GATC 9 cut(s) 89, 232, 298, 367, 435, 657, 693, 759, 810
DpnII GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
EaeI YGGCCR 2 cut(s) 75, 205
EagI CGGCCG 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 785
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 307, 474
Eco24I GRGCYC 1 cut(s) 787
Eco47I GGWCC 4 cut(s) 391, 679, 707, 830
Eco52I CGGCCG 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 785
Eco88I CYCGRG 1 cut(s) 804
EcoICRI GAGCTC 1 cut(s) 785
EcoT14I CCWWGG 2 cut(s) 307, 474
EcoT38I GRGCYC 1 cut(s) 787
ErhI CCWWGG 2 cut(s) 307, 474
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 4 cut(s) 584, 679, 698, 815
FaqI GGGAC 4 cut(s) 42, 48, 54, 665
FatI CATG 4 cut(s) 580, 675, 694, 811
FauNDI CATATG 3 cut(s) 96, 184, 261
FbaI TGATCA 2 cut(s) 691, 757
Fnu4HI GCNGC 4 cut(s) 75, 564, 673, 714
FokI GGATG 4 cut(s) 124, 157, 228, 509
FriOI GRGCYC 1 cut(s) 787
Fsp4HI GCNGC 4 cut(s) 75, 564, 673, 714
FspBI CTAG 5 cut(s) 126, 470, 510, 560, 825
GlaI GCGC 1 cut(s) 532
GluI GCNGC 4 cut(s) 75, 564, 673, 714
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 3 cut(s) 77, 207, 846
HapII CCGG 4 cut(s) 78, 102, 840, 861
HhaI GCGC 1 cut(s) 533
Hin1II CATG 4 cut(s) 584, 679, 698, 815
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 5 cut(s) 53, 323, 359, 614, 767
HpaII CCGG 4 cut(s) 78, 102, 840, 861
HphI GGTGA 2 cut(s) 62, 296
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 4 cut(s) 87, 202, 593, 688
Hpy188III TCNNGA 5 cut(s) 167, 294, 363, 437, 806
Hpy8I GTNNAC 1 cut(s) 707
Hpy99I CGWCG 2 cut(s) 421, 630
HpyAV CCTTC 5 cut(s) 3, 131, 135, 266, 423
HpyCH4III ACNGT 3 cut(s) 45, 704, 870
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 188, 713
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 80, 418, 497, 506, 539, 719, 738
HpyF3I CTNAG 2 cut(s) 492, 590
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 4 cut(s) 584, 679, 698, 815
HspAI GCGC 1 cut(s) 531
Ksp22I TGATCA 2 cut(s) 691, 757
Kzo9I GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
LmnI GCTCC 3 cut(s) 88, 115, 727
Lsp1109I GCAGC 3 cut(s) 575, 684, 725
LweI GCATC 3 cut(s) 478, 487, 640
MaeI CTAG 5 cut(s) 126, 470, 510, 560, 825
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 573, 864
MalI GATC 9 cut(s) 89, 232, 298, 367, 435, 657, 693, 759, 810
MboI GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
MboII GAAGA 2 cut(s) 443, 454
MflI RGATCY 2 cut(s) 296, 433
MhlI GDGCHC 3 cut(s) 85, 120, 787
MluCI AATT 2 cut(s) 525, 599
MmeI TCCRAC 1 cut(s) 633
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 1 cut(s) 378
MspI CCGG 4 cut(s) 78, 102, 840, 861
MspR9I CCNGG 2 cut(s) 840, 862
Mva1269I GAATGC 1 cut(s) 70
MwoI GCNNNNNNNGC 8 cut(s) 74, 80, 418, 497, 506, 539, 719, 738
NciI CCSGG 2 cut(s) 840, 862
NdeI CATATG 3 cut(s) 96, 184, 261
NdeII GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 4 cut(s) 584, 679, 698, 815
NlaIV GGNNCC 2 cut(s) 681, 723
NmeAIII GCCGAG 2 cut(s) 698, 767
NmuCI GTSAC 2 cut(s) 573, 864
NspI RCATGY 1 cut(s) 584
NspV TTCGAA 1 cut(s) 135
PaeI GCATGC 1 cut(s) 584
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 5 cut(s) 53, 323, 359, 614, 767
PfoI TCCNGGA 1 cut(s) 838
PkrI GCNGC 4 cut(s) 76, 565, 674, 715
Psp124BI GAGCTC 1 cut(s) 787
PspN4I GGNNCC 2 cut(s) 681, 723
PspPI GGNCC 4 cut(s) 391, 679, 707, 830
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 2 cut(s) 296, 433
RsaI GTAC 3 cut(s) 266, 701, 872
RsaNI GTAC 3 cut(s) 265, 700, 871
SacI GAGCTC 1 cut(s) 787
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 75, 564, 673, 714
Sau3AI GATC 9 cut(s) 87, 230, 296, 365, 433, 655, 691, 757, 808
Sau96I GGNCC 4 cut(s) 391, 679, 707, 830
ScrFI CCNGG 2 cut(s) 840, 862
SduI GDGCHC 3 cut(s) 85, 120, 787
SfaNI GCATC 3 cut(s) 478, 487, 640
SfcI CTRYAG 1 cut(s) 711
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 4 cut(s) 391, 679, 707, 830
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SphI GCATGC 1 cut(s) 584
Sse9I AATT 2 cut(s) 525, 599
SsiI CCGC 2 cut(s) 74, 500
SspMI CTAG 5 cut(s) 126, 470, 510, 560, 825
SstI GAGCTC 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 838, 860
StyI CCWWGG 2 cut(s) 307, 474
TaaI ACNGT 3 cut(s) 45, 704, 870
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 135, 787
TaqII GACCGA 1 cut(s) 561
TasI AATT 2 cut(s) 525, 599
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 5 cut(s) 53, 323, 359, 614, 767
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 2 cut(s) 573, 864
TseI GCWGC 3 cut(s) 563, 672, 713
Tsp45I GTSAC 2 cut(s) 573, 864
TspDTI ATGAA 3 cut(s) 285, 612, 759
TspGWI ACGGA 2 cut(s) 188, 637
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 4 cut(s) 391, 679, 707, 830
XceI RCATGY 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 5 cut(s) 126, 470, 510, 560, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.