pycom03g11210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011391
Physical Location & Seq
Forward (+)
10843440 .. 10848687
5248 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11210.3

Sequence Viewer

Length: 858 bp
ATGATGAGAAGGCAGGGGCAGTATGGTGATTCGGGTGCGAATGCGTATGCCGCCGCTGCTCCGATGCACCATATGTCTGGTCAAAGGATGGAGCACAATTCTAGCCATTTCGAAGAAAGGCTGGAAGCTTTCACTCCACCTCCAGAGAGGGAGAATCCGTATGCAACTTCGAAATCAGAGGACCAGTGGAGATGGGAAAGAGATGGGTCCAAAGGGTCAAATCCAGTGACATCTCATATGTACAATGAAGGTCAAGGAGGTGATACATCAAGATCTTATTTCCAGGGTCAAAGGCCAGATTCAAAACATTCTTTGGAGAAACAGAGCAGCAACAATTCCCAATCTCAACCACTTAATGAAGTTATGGACCTTGGATATGAGGACAAGCCTTCGTCGCAGACTTTTGAAGATCTTGAGAAGAAGTTCCTTGATGACATTAAAAAACTAGTGCATGAACAGAGTGATGCTGAGGATGCGGAAAATGCTAGGCATAGAGAGAAAATTGGCGTGGTCAATGCTCAATACCAAGAACAGCTGGCAGCACTTCGGGCACGGCATGCTAAACGTAGAGATGAATTACTTGAGAAGGAATCAAATGCCCGACAGCATCAGTACCGGCAATTGGTGATAGATCGTTACCCAAACAGCAGCATGGGCGCCTCTGATCATCATGGGTACAGTGGAGTTGCAGCCTCGGCTCCTGTTGGTGAAGCACACCGAGGGTATAATACTGATCAACATGATTCCTACAGTGAGAGGGCTCGATTTCTTGGGGGTTCTCGGATCGATCATCGGTTTGAGCCTAGAAGTCCATATCCTGGAGGTCGTGTCTATGATACTGGTTCACGGTATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.54

Weight (kDa)

6.21

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 656
AccB7I CCANNNNNTGG 1 cut(s) 818
AciI CCGC 3 cut(s) 51, 54, 476
AclWI GGATC 1 cut(s) 791
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 3 cut(s) 242, 614, 677
AfiI CCNNNNNNNGG 2 cut(s) 622, 818
AgsI TTSAA 2 cut(s) 303, 407
AhlI ACTAGT 1 cut(s) 445
AjnI CCWGG 2 cut(s) 282, 817
AluBI AGCT 2 cut(s) 128, 535
AluI AGCT 2 cut(s) 128, 535
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 1 cut(s) 791
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 5 cut(s) 56, 327, 539, 648, 689
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 3 cut(s) 181, 207, 367
AsuHPI GGTGA 4 cut(s) 38, 272, 637, 719
AsuII TTCGAA 2 cut(s) 111, 170
AvaII GGWCC 3 cut(s) 181, 207, 367
BaeGI GKGCMC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 763
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 5 cut(s) 43, 339, 551, 660, 701
BccI CCATC 3 cut(s) 82, 186, 197
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 2 cut(s) 284, 819
BclI TGATCA 2 cut(s) 664, 733
BcuI ACTAGT 1 cut(s) 445
BfaI CTAG 4 cut(s) 102, 446, 486, 804
BfmI CTRYAG 1 cut(s) 748
BfoI RGCGCY 1 cut(s) 660
BglII AGATCT 2 cut(s) 272, 409
BisI GCNGC 7 cut(s) 51, 54, 57, 328, 540, 649, 690
BlsI GCNGC 7 cut(s) 52, 55, 58, 329, 541, 650, 691
Bme1390I CCNGG 2 cut(s) 284, 819
Bme18I GGWCC 3 cut(s) 181, 207, 367
BmgT120I GGNCC 3 cut(s) 181, 207, 367
BmiI GGNNCC 3 cut(s) 208, 658, 699
BmrFI CCNGG 2 cut(s) 284, 819
BmsI GCATC 4 cut(s) 54, 454, 463, 616
BpmI CTGGAG 2 cut(s) 126, 840
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 2 cut(s) 111, 170
BpuEI CTTGAG 2 cut(s) 434, 602
Bsa29I ATCGAT 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 4 cut(s) 283, 370, 693, 718
BsaXI ACNNNNNCTCC 6 cut(s) 124, 143, 154, 173, 813, 843
Bsc4I CCNNNNNNNGG 2 cut(s) 622, 818
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 3 cut(s) 184, 224, 844
BseBI CCWGG 2 cut(s) 284, 819
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 4 cut(s) 283, 370, 693, 718
BseGI GGATG 2 cut(s) 93, 478
BseLI CCNNNNNNNGG 2 cut(s) 622, 818
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 3 cut(s) 184, 224, 844
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 5 cut(s) 43, 339, 551, 660, 701
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 616
BslI CCNNNNNNNGG 2 cut(s) 622, 818
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 295
Bsp119I TTCGAA 2 cut(s) 111, 170
Bsp1286I GDGCHC 3 cut(s) 96, 553, 763
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
BspACI CCGC 3 cut(s) 51, 54, 476
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 460
BspDI ATCGAT 1 cut(s) 786
BspLI GGNNCC 3 cut(s) 208, 658, 699
BspPI GGATC 1 cut(s) 791
BspT104I TTCGAA 2 cut(s) 111, 170
BspT107I GGYRCC 1 cut(s) 656
BsrFI RCCGGY 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 3 cut(s) 184, 224, 844
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 4 cut(s) 283, 370, 693, 718
BssMI GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 284, 819
Bst4CI ACNGT 3 cut(s) 680, 752, 849
BstACI GRCGYC 1 cut(s) 657
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 240
BstBI TTCGAA 2 cut(s) 111, 170
BstC8I GCNNGC 2 cut(s) 537, 558
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 93, 478
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 7 cut(s) 275, 412, 634, 667, 736, 786, 790
BstMBI GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
BstMWI GCNNNNNNNGC 9 cut(s) 50, 56, 394, 473, 482, 548, 557, 654, 695
BstNI CCWGG 2 cut(s) 284, 819
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 282, 817
BstSFI CTRYAG 1 cut(s) 748
BstSLI GKGCMC 1 cut(s) 553
BstV1I GCAGC 5 cut(s) 43, 339, 551, 660, 701
BstX2I RGATCY 2 cut(s) 272, 409
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 2 cut(s) 272, 409
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 1 cut(s) 295
BsuTUI ATCGAT 1 cut(s) 786
BtsCI GGATG 2 cut(s) 93, 478
BtsIMutI CAGTG 4 cut(s) 191, 231, 685, 757
Cac8I GCNNGC 2 cut(s) 537, 558
CfoI GCGC 1 cut(s) 659
Cfr10I RCCGGY 1 cut(s) 615
Cfr13I GGNCC 3 cut(s) 181, 207, 367
ClaI ATCGAT 1 cut(s) 786
Csp6I GTAC 3 cut(s) 241, 613, 676
CviAII CATG 5 cut(s) 452, 557, 652, 671, 740
CviQI GTAC 3 cut(s) 241, 613, 676
DdeI CTNAG 1 cut(s) 468
DinI GGCGCC 1 cut(s) 658
DpnI GATC 7 cut(s) 274, 411, 633, 666, 735, 785, 789
DpnII GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 763
Eco47I GGWCC 3 cut(s) 181, 207, 367
EcoRII CCWGG 2 cut(s) 282, 817
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 763
EgeI GGCGCC 1 cut(s) 658
EheI GGCGCC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 5 cut(s) 455, 560, 655, 674, 743
FatI CATG 5 cut(s) 451, 556, 651, 670, 739
FauNDI CATATG 2 cut(s) 72, 237
FbaI TGATCA 2 cut(s) 664, 733
Fnu4HI GCNGC 7 cut(s) 51, 54, 57, 328, 540, 649, 690
FokI GGATG 2 cut(s) 100, 485
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 7 cut(s) 51, 54, 57, 328, 540, 649, 690
FspBI CTAG 4 cut(s) 102, 446, 486, 804
GlaI GCGC 1 cut(s) 658
GluI GCNGC 7 cut(s) 51, 54, 57, 328, 540, 649, 690
GsuI CTGGAG 2 cut(s) 126, 840
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 616
HhaI GCGC 1 cut(s) 659
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 5 cut(s) 455, 560, 655, 674, 743
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 5 cut(s) 29, 154, 299, 590, 743
HpaII CCGG 1 cut(s) 616
HphI GGTGA 4 cut(s) 38, 272, 637, 719
Hpy166II GTNNAC 1 cut(s) 845
Hpy188I TCNGA 4 cut(s) 63, 178, 664, 783
Hpy188III TCNNGA 3 cut(s) 143, 270, 413
Hpy8I GTNNAC 1 cut(s) 845
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 4 cut(s) 3, 242, 399, 580
HpyCH4III ACNGT 3 cut(s) 680, 752, 849
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 4 cut(s) 67, 164, 451, 689
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 56, 394, 473, 482, 548, 557, 654, 695
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 565
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 5 cut(s) 455, 560, 655, 674, 743
HspAI GCGC 1 cut(s) 657
KasI GGCGCC 1 cut(s) 656
Ksp22I TGATCA 2 cut(s) 664, 733
Kzo9I GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
LmnI GCTCC 3 cut(s) 64, 91, 703
Lsp1109I GCAGC 5 cut(s) 43, 339, 551, 660, 701
LweI GCATC 4 cut(s) 54, 454, 463, 616
MaeI CTAG 4 cut(s) 102, 446, 486, 804
MaeII ACGT 1 cut(s) 565
MaeIII GTNAC 2 cut(s) 226, 635
MalI GATC 7 cut(s) 274, 411, 633, 666, 735, 785, 789
MboI GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
MboII GAAGA 3 cut(s) 125, 419, 430
MfeI CAATTG 1 cut(s) 620
MflI RGATCY 2 cut(s) 272, 409
MhlI GDGCHC 3 cut(s) 96, 553, 763
MluCI AATT 5 cut(s) 97, 334, 501, 575, 620
Mly113I GGCGCC 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 2 cut(s) 354, 438
MspA1I CMGCKG 2 cut(s) 56, 535
MspI CCGG 1 cut(s) 616
MspR9I CCNGG 2 cut(s) 284, 819
MunI CAATTG 1 cut(s) 620
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 284, 819
MwoI GCNNNNNNNGC 9 cut(s) 50, 56, 394, 473, 482, 548, 557, 654, 695
NarI GGCGCC 1 cut(s) 657
NdeI CATATG 2 cut(s) 72, 237
NdeII GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
NlaIII CATG 5 cut(s) 455, 560, 655, 674, 743
NlaIV GGNNCC 3 cut(s) 208, 658, 699
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 2 cut(s) 111, 170
PaeI GCATGC 1 cut(s) 560
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 5 cut(s) 29, 154, 299, 590, 743
PflMI CCANNNNNTGG 1 cut(s) 818
PfoI TCCNGGA 1 cut(s) 817
PkrI GCNGC 7 cut(s) 52, 55, 58, 329, 541, 650, 691
PluTI GGCGCC 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 282, 817
PspGI CCWGG 2 cut(s) 282, 817
PspN4I GGNNCC 3 cut(s) 208, 658, 699
PspPI GGNCC 3 cut(s) 181, 207, 367
PsuI RGATCY 2 cut(s) 272, 409
PvuII CAGCTG 1 cut(s) 535
RsaI GTAC 3 cut(s) 242, 614, 677
RsaNI GTAC 3 cut(s) 241, 613, 676
SaqAI TTAA 2 cut(s) 354, 438
SatI GCNGC 7 cut(s) 51, 54, 57, 328, 540, 649, 690
Sau3AI GATC 7 cut(s) 272, 409, 631, 664, 733, 783, 787
Sau96I GGNCC 3 cut(s) 181, 207, 367
ScrFI CCNGG 2 cut(s) 284, 819
SduI GDGCHC 3 cut(s) 96, 553, 763
SetI ASST 8 cut(s) 130, 142, 253, 262, 372, 537, 568, 826
SfaNI GCATC 4 cut(s) 54, 454, 463, 616
SfcI CTRYAG 1 cut(s) 748
SfoI GGCGCC 1 cut(s) 658
SfuI TTCGAA 2 cut(s) 111, 170
SinI GGWCC 3 cut(s) 181, 207, 367
SmlI CTYRAG 2 cut(s) 413, 581
SmoI CTYRAG 2 cut(s) 413, 581
SpeI ACTAGT 1 cut(s) 445
SphI GCATGC 1 cut(s) 560
Sse9I AATT 5 cut(s) 97, 334, 501, 575, 620
SsiI CCGC 3 cut(s) 51, 54, 476
SspDI GGCGCC 1 cut(s) 656
SspMI CTAG 4 cut(s) 102, 446, 486, 804
StyD4I CCNGG 2 cut(s) 282, 817
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 3 cut(s) 680, 752, 849
TaiI ACGT 1 cut(s) 568
TaqI TCGA 4 cut(s) 111, 170, 763, 786
TasI AATT 5 cut(s) 97, 334, 501, 575, 620
TatI WGTACW 1 cut(s) 240
TauI GCSGC 2 cut(s) 53, 56
TfiI GAWTC 5 cut(s) 29, 154, 299, 590, 743
Tru1I TTAA 2 cut(s) 354, 438
Tru9I TTAA 2 cut(s) 354, 438
TscAI CASTG 4 cut(s) 191, 231, 685, 757
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 5 cut(s) 56, 327, 539, 648, 689
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 4 cut(s) 261, 372, 468, 588
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 4 cut(s) 191, 231, 685, 757
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 3 cut(s) 181, 207, 367
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 4 cut(s) 102, 446, 486, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.