RLG00000034588

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011391
Physical Location & Seq
Forward (+)
45447623 .. 45451336
3714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034588

Sequence Viewer

Length: 927 bp
ATGATGAGACGCCAGCAGACGCAGTACGCCGGCGATTCAGGCGGCGCCAATTCGTATGGTGGCGGAGGCGGTGGCGCTGCGGCAGCTTCATTGCACCACCACCACCACCATCATCATCAGCAGCAGCAGCAGCAGCAGCCGAGTAGTGTTGGTGCTAGTGATTTTGAAGGACGACTCGAAGCGTTCACACCCGAGAGGGATAGCAATCCTAATCCTAATCCATACGCTACTTCTTCCAAACCAGAGGCCCAGTGGAGATGGGAAAGAGATGCATCCAATTCCAAAGCCTCCAATCCATTGACACCTCACATGTTTAGTGAAGGTCAAGTGGGTGATACATCTAGATCCTATTTCCAGGGTCAAAGGTCCGATCCAAAACATGCTTTAGAGACACAAAGCAACAGCGATCCCCGATCTCAACCTCATATTGAAGATATGGACCTTGGGTATGAGGATAAGCCTTCGTCACAGTCCTTTGAAGTTCTGGAGCAGAAATTCCTTGATGACATTAGGAAACTAACCAAGGAACAGAATGATGCTGAGGATGCAGAAAATGCTAGACACAGAGAGAAAATTGGTACAATCAATGCTCAGTATGAAGAACAATTAGCATCACTACGGTGCCAGCATGCTGGCCGTAGAGATGATTTACTTCGGAGGGAATCAAATGCCCGGCAGCATCAATACCAGCAATCCATGATGGATCGTTACCCTAAAAGCAGCATGGGCTCCTCCGATCTTCATGGTTACAGCGGAATTCCGGCCTCAGCTACTGCTGGCGATACACGCAGAGGCTACGAAACTGACCAATATGATTCCTACAGAGAACGGGCTCGATTTCTTGGGGGTTCCCGTGATCATGGGTTTGAGCCTAGGGGACCATATCCGGGAGGGCGTGTTTATGATACTGGCTCACGTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

34.73

Weight (kDa)

6.14

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 44, 621
AciI CCGC 5 cut(s) 42, 63, 69, 80, 753
AclWI GGATC 4 cut(s) 339, 365, 401, 711
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 2 cut(s) 494, 756
AcyI GRCGYC 2 cut(s) 10, 45
AfaI GTAC 2 cut(s) 26, 580
AfiI CCNNNNNNNGG 1 cut(s) 887
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 167, 431, 479
AjnI CCWGG 1 cut(s) 354
AleI CACNNNNGTG 1 cut(s) 619
AluBI AGCT 2 cut(s) 86, 770
AluI AGCT 2 cut(s) 86, 770
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 4 cut(s) 339, 365, 401, 711
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 246, 634, 762
ApoI RAATTY 2 cut(s) 494, 756
AspA2I CCTAGG 1 cut(s) 872
AspLEI GCGC 2 cut(s) 47, 77
AspS9I GGNCC 4 cut(s) 247, 366, 439, 878
AsuC2I CCSGG 2 cut(s) 673, 888
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 3 cut(s) 366, 439, 878
AvrII CCTAGG 1 cut(s) 872
BanI GGYRCC 2 cut(s) 44, 621
BanII GRGCYC 2 cut(s) 731, 835
BbvCI CCTCAGC 2 cut(s) 540, 766
BccI CCATC 3 cut(s) 117, 252, 694
BceAI ACGGC 1 cut(s) 621
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 1 cut(s) 856
BcnI CCSGG 2 cut(s) 673, 888
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 4 cut(s) 156, 342, 558, 873
BfmI CTRYAG 1 cut(s) 820
BfoI RGCGCY 2 cut(s) 48, 78
BlnI CCTAGG 1 cut(s) 872
Bme1390I CCNGG 3 cut(s) 356, 673, 888
Bme18I GGWCC 3 cut(s) 366, 439, 878
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 4 cut(s) 247, 366, 439, 878
BmiI GGNNCC 5 cut(s) 46, 623, 730, 850, 879
BmrFI CCNGG 3 cut(s) 356, 673, 888
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 6 cut(s) 259, 281, 526, 535, 620, 688
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 2 cut(s) 540, 766
BpuMI CCSGG 2 cut(s) 673, 888
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 2 cut(s) 10, 45
BsaJI CCNNGG 4 cut(s) 355, 442, 522, 872
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 1 cut(s) 887
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 250, 913
Bse3DI GCAATG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 4 cut(s) 355, 442, 522, 872
BseGI GGATG 2 cut(s) 272, 550
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 887
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 3 cut(s) 531, 605, 780
BseNI ACTGG 2 cut(s) 250, 913
BseRI GAGGAG 1 cut(s) 721
BshFI GGCC 3 cut(s) 248, 636, 764
BshNI GGYRCC 2 cut(s) 44, 621
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 30, 673, 761, 887
BslFI GGGAC 1 cut(s) 891
BslI CCNNNNNNNGG 1 cut(s) 887
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 891
BsnI GGCC 3 cut(s) 248, 636, 764
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 731, 835
Bsp143I GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
BspACI CCGC 5 cut(s) 42, 63, 69, 80, 753
BspANI GGCC 3 cut(s) 248, 636, 764
BspCNI CTCAG 3 cut(s) 532, 604, 779
BspLI GGNNCC 5 cut(s) 46, 623, 730, 850, 879
BspPI GGATC 4 cut(s) 339, 365, 401, 711
BspT107I GGYRCC 2 cut(s) 44, 621
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 250, 913
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 355, 442, 522, 872
BssMI GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
BssNI GRCGYC 2 cut(s) 10, 45
BssT1I CCWWGG 3 cut(s) 442, 522, 872
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 471, 621
BstACI GRCGYC 2 cut(s) 10, 45
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 6 cut(s) 14, 31, 626, 630, 634, 778
BstDEI CTNAG 3 cut(s) 540, 591, 766
BstF5I GGATG 2 cut(s) 272, 550
BstH2I RGCGCY 2 cut(s) 48, 78
BstHHI GCGC 2 cut(s) 47, 77
BstKTI GATC 7 cut(s) 347, 373, 409, 416, 706, 739, 859
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 3 cut(s) 313, 383, 632
BstSCI CCNGG 3 cut(s) 354, 671, 886
BstSFI CTRYAG 1 cut(s) 820
BstX2I RGATCY 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 632
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 3 cut(s) 248, 636, 764
BtsCI GGATG 2 cut(s) 272, 550
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 6 cut(s) 14, 31, 626, 630, 634, 778
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 47, 77
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 4 cut(s) 247, 366, 439, 878
CseI GACGC 2 cut(s) 18, 28
Csp6I GTAC 2 cut(s) 25, 579
CviAII CATG 7 cut(s) 310, 380, 629, 697, 724, 743, 860
CviQI GTAC 2 cut(s) 25, 579
DdeI CTNAG 3 cut(s) 540, 591, 766
DinI GGCGCC 1 cut(s) 46
DpnI GATC 7 cut(s) 346, 372, 408, 415, 705, 738, 858
DpnII GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
EaeI YGGCCR 1 cut(s) 634
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 3 cut(s) 442, 522, 872
Eco24I GRGCYC 2 cut(s) 731, 835
Eco47I GGWCC 3 cut(s) 366, 439, 878
Eco88I CYCGRG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 756
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 3 cut(s) 442, 522, 872
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 731, 835
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 442, 522, 872
FaeI CATG 7 cut(s) 313, 383, 632, 700, 727, 746, 863
FaqI GGGAC 1 cut(s) 891
FatI CATG 7 cut(s) 309, 379, 628, 696, 723, 742, 859
FbaI TGATCA 1 cut(s) 856
FokI GGATG 2 cut(s) 259, 557
FriOI GRGCYC 2 cut(s) 731, 835
FspBI CTAG 4 cut(s) 156, 342, 558, 873
GlaI GCGC 2 cut(s) 46, 76
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 2 cut(s) 48, 78
HaeIII GGCC 3 cut(s) 248, 636, 764
HapII CCGG 4 cut(s) 30, 673, 761, 887
HgaI GACGC 2 cut(s) 18, 28
HhaI GCGC 2 cut(s) 47, 77
Hin1I GRCGYC 2 cut(s) 10, 45
Hin1II CATG 7 cut(s) 313, 383, 632, 700, 727, 746, 863
Hin6I GCGC 2 cut(s) 45, 75
HinP1I GCGC 2 cut(s) 45, 75
HinfI GANTC 4 cut(s) 35, 174, 662, 815
HpaII CCGG 4 cut(s) 30, 673, 761, 887
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 370, 657, 736
Hpy188III TCNNGA 2 cut(s) 342, 485
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 3 cut(s) 161, 314, 471
HpyCH4III ACNGT 2 cut(s) 471, 621
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 3 cut(s) 94, 272, 548
HpyF3I CTNAG 3 cut(s) 540, 591, 766
HpySE526I ACGT 1 cut(s) 916
Hsp92I GRCGYC 2 cut(s) 10, 45
Hsp92II CATG 7 cut(s) 313, 383, 632, 700, 727, 746, 863
HspAI GCGC 2 cut(s) 45, 75
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
LmnI GCTCC 2 cut(s) 487, 734
LweI GCATC 6 cut(s) 259, 281, 526, 535, 620, 688
MaeI CTAG 4 cut(s) 156, 342, 558, 873
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 3 cut(s) 465, 707, 746
MalI GATC 7 cut(s) 346, 372, 408, 415, 705, 738, 858
MboI GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
MboII GAAGA 4 cut(s) 225, 443, 611, 731
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 731, 835
MluCI AATT 6 cut(s) 49, 277, 494, 573, 605, 756
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 168
Mph1103I ATGCAT 1 cut(s) 274
MreI CGCCGGCG 1 cut(s) 29
MroNI GCCGGC 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 619
MspA1I CMGCKG 1 cut(s) 753
MspI CCGG 4 cut(s) 30, 673, 761, 887
MspR9I CCNGG 3 cut(s) 356, 673, 888
MvaI CCWGG 1 cut(s) 356
NaeI GCCGGC 1 cut(s) 31
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 2 cut(s) 673, 888
NdeII GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 7 cut(s) 313, 383, 632, 700, 727, 746, 863
NlaIV GGNNCC 5 cut(s) 46, 623, 730, 850, 879
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 465
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 3 cut(s) 313, 383, 632
OliI CACNNNNGTG 1 cut(s) 619
PaeI GCATGC 1 cut(s) 632
PciI ACATGT 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 35, 662, 815
PfoI TCCNGGA 1 cut(s) 886
PleI GAGTC 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 168
PscI ACATGT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 5 cut(s) 46, 623, 730, 850, 879
PspPI GGNCC 4 cut(s) 247, 366, 439, 878
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 2 cut(s) 26, 580
RsaNI GTAC 2 cut(s) 25, 579
RseI CAYNNNNRTG 1 cut(s) 619
Sau3AI GATC 7 cut(s) 344, 370, 406, 413, 703, 736, 856
Sau96I GGNCC 4 cut(s) 247, 366, 439, 878
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 3 cut(s) 356, 673, 888
SduI GDGCHC 2 cut(s) 731, 835
SetI ASST 8 cut(s) 88, 307, 325, 368, 424, 444, 772, 919
SfaNI GCATC 6 cut(s) 259, 281, 526, 535, 620, 688
SfcI CTRYAG 1 cut(s) 820
SfoI GGCGCC 1 cut(s) 46
SgrAI CRCCGGYG 1 cut(s) 29
SinI GGWCC 3 cut(s) 366, 439, 878
SmiMI CAYNNNNRTG 1 cut(s) 619
SphI GCATGC 1 cut(s) 632
Sse9I AATT 6 cut(s) 49, 277, 494, 573, 605, 756
SsiI CCGC 5 cut(s) 42, 63, 69, 80, 753
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 4 cut(s) 156, 342, 558, 873
StyD4I CCNGG 3 cut(s) 354, 671, 886
StyI CCWWGG 3 cut(s) 442, 522, 872
TaaI ACNGT 2 cut(s) 471, 621
TaiI ACGT 1 cut(s) 919
TaqI TCGA 2 cut(s) 177, 835
TasI AATT 6 cut(s) 49, 277, 494, 573, 605, 756
TauI GCSGC 2 cut(s) 45, 83
TfiI GAWTC 3 cut(s) 35, 662, 815
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 3 cut(s) 78, 612, 731
TspRI CASTG 1 cut(s) 257
VpaK11BI GGWCC 3 cut(s) 366, 439, 878
XapI RAATTY 2 cut(s) 494, 756
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 3 cut(s) 313, 383, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 249
XmaJI CCTAGG 1 cut(s) 872
XspI CTAG 4 cut(s) 156, 342, 558, 873
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.