Rorug05G0243100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011391
Physical Location & Seq
Forward (+)
26044223 .. 26044567
345 bp
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UTR
Exon/CDS
Intron
Rorug05G0243100.1

Sequence Viewer

Length: 345 bp
ATGGCTAGCCTTCGCCGTCGTCATATGGGTGGCCGGCCCTCTACGCCTCCATGCTCCTCAGCGTTGATGGAGGCTGCTCTCCATGTTTGCAGCGCTGGCTGTGATGGTACCTACCATTTGGCTGACGTGGATTGTGATTGTGGTTCTCTTGGCCTTGAGGCCTTCTTTCGGAAGCCCAGGAGGAGTTTGGTCATCGAAGGCAGGAAGATTACTAGAGAGATTGTTGGGATTGTGTTTAAGATTTTGTTGAAGGAGGGCAAATTGGTGGCTGTTATTTGTGCTGTTTTGGGCTATTTTGCACTTTTTAGGAGGAAAAGTAATGCTACCCCTGACCTCTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

9.24

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 31
AfaI GTAC 1 cut(s) 109
AfeI AGCGCT 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 250
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 176
Aor51HI AGCGCT 1 cut(s) 94
AoxI GGCC 4 cut(s) 31, 35, 151, 159
ApeKI GCWGC 2 cut(s) 74, 90
Asp718I GGTACC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 61, 102
BccI CCATC 2 cut(s) 61, 98
BciT130I CCWGG 1 cut(s) 178
BfaI CTAG 2 cut(s) 6, 213
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 2 cut(s) 75, 91
BlsI GCNGC 2 cut(s) 76, 92
Bme1390I CCNGG 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 33
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 46, 196
BseXI GCAGC 2 cut(s) 61, 102
BshFI GGCC 4 cut(s) 33, 37, 153, 161
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 168
BsnI GGCC 4 cut(s) 33, 37, 153, 161
BspANI GGCC 4 cut(s) 33, 37, 153, 161
BspCNI CTCAG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 7, 35, 97
BstDEI CTNAG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 43, 96
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 61, 102
BsuRI GGCC 4 cut(s) 33, 37, 153, 161
BtrI CACGTC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 7, 35, 97
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 51, 83
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 161
Eco47III AGCGCT 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 54, 86
FaiI YATR 4 cut(s) 24, 26, 52, 84
FatI CATG 2 cut(s) 50, 82
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 75, 91
FseI GGCCGGCC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 75, 91
FspBI CTAG 2 cut(s) 6, 213
GlaI GCGC 1 cut(s) 94
GluI GCNGC 2 cut(s) 75, 91
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 4 cut(s) 33, 37, 153, 161
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 95
Hin1II CATG 2 cut(s) 54, 86
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HpaII CCGG 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 4 cut(s) 20, 172, 191, 244
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 90, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 96
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 54, 86
HspAI GCGC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 111
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 5 cut(s) 47, 81, 163, 187, 190
Lsp1109I GCAGC 2 cut(s) 61, 102
MaeI CTAG 2 cut(s) 6, 213
MaeII ACGT 1 cut(s) 126
MboII GAAGA 1 cut(s) 217
MluCI AATT 1 cut(s) 260
MnlI CCTC 9 cut(s) 49, 57, 64, 67, 151, 174, 247, 303, 344
MroNI GCCGGC 1 cut(s) 33
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 43, 96
NaeI GCCGGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 54, 86
NlaIV GGNNCC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 76, 92
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 36
RigI GGCCGGCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 75, 91
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 178
SetI ASST 3 cut(s) 113, 129, 336
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 161
SspMI CTAG 2 cut(s) 6, 213
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 176
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 260
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 2 cut(s) 74, 90
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 2 cut(s) 6, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.