Prupe.6G147200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011391
Physical Location & Seq
Forward (+)
12236299 .. 12241809
5511 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G147200.1

Sequence Viewer

Length: 846 bp
ATGAGACGGCAGGGGCAGTATGGTGATTCAGGAGTGAACACATATGCTGCTGCTGCTCCGATGCATCATATGTCTGGGCAGAGGATGGAGCACAAATCTAGTCATTTTGAAGGACGATTGGAAGCCTTCACTCCAGAGAGGGACAATCCATATGCATCTTCAAAATCAGAGGGCCAATGGAGATGGGAAAGAGATGGATCAAAAGGGTCAAATCCAATGGCATCTCATATGTACAATGAAGGTCAAGGGGGTGATACATCAAGATCCTATTACCAGGGTCAAAGGCCTGATCCAAAACTTGCTATGGAGAAACAAAACAACAATGATTCCCGATCTCAATCTCATAATGAAGATATGGACCTTGGGTATGAGGACAAGCCTTCCTCACAGACTTTTGAAGAACTTGAGCAGAAATTCCTTGGCGACATTAGGAAACTAACCAAGGAACAGAACGATGCTGAGGATGCAGAAAATGCTAGACACAAAGAGAAAATTGGTGCGATAAATGCTCAGTATGAAGAACAACTAGTAGCACTTCGGGCGCGGCATGCAAGTCGTAGAGACGAATTGCTTCGTAGGGAATCAAATGCCCGGCAGCATCAGTACCAGCAGTCAGTAATGGATCGTTACCCTAACAGCAGCATGGGCCCCTCTGAACTTCGTGGGTACAGTGGAGTTGCAGCCTCAGCTGCTGGTGGCGAAGGGCACCGAGCCTATAATACTGATCAATATGAGTCCTACAGAGAGCGGGCTCGATTTCTTGGAGGTTCTCGTGATCATGGGTTTGAGCCTAGAGGTCCATATCCAGGAGGCCGAGTTTATGATACCGGCTCGCGCTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

32.05

Weight (kDa)

6.43

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22040 AT5G22040 AT5G22040
fragaria_vesca FvH4_3g26150 FvH4_3g26150
malus_domestica MD03G1159500.v1.1 MD11G1174800.v1.1
prunus_persica Prupe.6G147200_v2.0.a1
pyrus_communis pycom03g11210 pycom11g14950
rosa_chinensis RchiOBHm_Chr5g0049091
rosa_laevigata RLG00000034588
rosa_multiflora Rmu_co8392037.1_g000001
rosa_roxburghii Rroxscaffold_1G00032780
rosa_rugosa Rorug05G0243100
rosa_samantha Rh5AG322600 Rh5BG333200 Rh5CG358100 Rh5DG344600
rosa_wichuraiana Rw5G030440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 705
AccBSI CCGCTC 1 cut(s) 748
AccII CGCG 2 cut(s) 544, 835
AciI CCGC 2 cut(s) 544, 748
AclWI GGATC 4 cut(s) 205, 258, 284, 630
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 3 cut(s) 233, 605, 668
AfiI CCNNNNNNNGG 1 cut(s) 806
AgsI TTSAA 3 cut(s) 110, 162, 398
AhlI ACTAGT 1 cut(s) 526
AjnI CCWGG 2 cut(s) 273, 805
AluBI AGCT 1 cut(s) 689
AluI AGCT 1 cut(s) 689
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 555
AlwI GGATC 4 cut(s) 205, 258, 284, 630
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 4 cut(s) 172, 284, 646, 811
ApaI GGGCCC 1 cut(s) 650
ApeKI GCWGC 7 cut(s) 47, 50, 53, 595, 639, 680, 689
ApoI RAATTY 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 2 cut(s) 544, 837
AspS9I GGNCC 5 cut(s) 172, 358, 646, 647, 797
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 35, 263
AvaII GGWCC 2 cut(s) 358, 797
BaeGI GKGCMC 2 cut(s) 650, 708
BanI GGYRCC 1 cut(s) 705
BanII GRGCYC 2 cut(s) 650, 754
BauI CACGAG 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 2 cut(s) 459, 685
BbvI GCAGC 7 cut(s) 34, 37, 40, 607, 651, 676, 692
BccI CCATC 3 cut(s) 79, 177, 188
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 2 cut(s) 275, 807
BclI TGATCA 2 cut(s) 724, 775
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 555
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 4 cut(s) 99, 477, 527, 792
BfmI CTRYAG 1 cut(s) 739
BisI GCNGC 8 cut(s) 48, 51, 54, 545, 596, 640, 681, 690
BlsI GCNGC 8 cut(s) 49, 52, 55, 546, 597, 641, 682, 691
Bme1390I CCNGG 3 cut(s) 275, 592, 807
Bme18I GGWCC 2 cut(s) 358, 797
BmgT120I GGNCC 5 cut(s) 172, 358, 646, 647, 797
BmiI GGNNCC 3 cut(s) 648, 649, 707
BmrFI CCNGG 3 cut(s) 275, 592, 807
BmsI GCATC 7 cut(s) 51, 73, 164, 230, 445, 454, 607
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 2 cut(s) 459, 685
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 592
BsaBI GATNNNNATC 1 cut(s) 337
BsaJI CCNNGG 4 cut(s) 274, 361, 418, 441
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse118I RCCGGY 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 337
BseBI CCWGG 2 cut(s) 275, 807
BseDI CCNNGG 4 cut(s) 274, 361, 418, 441
BseGI GGATG 2 cut(s) 90, 469
BseJI GATNNNNATC 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 3 cut(s) 450, 524, 699
BseSI GKGCMC 2 cut(s) 650, 708
BseXI GCAGC 7 cut(s) 34, 37, 40, 607, 651, 676, 692
Bsh1236I CGCG 2 cut(s) 544, 835
BshFI GGCC 4 cut(s) 174, 286, 648, 813
BshNI GGYRCC 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 2 cut(s) 592, 828
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 1 cut(s) 555
BsmBI CGTCTC 1 cut(s) 555
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 4 cut(s) 174, 286, 648, 813
Bsp120I GGGCCC 1 cut(s) 646
Bsp1286I GDGCHC 4 cut(s) 93, 650, 708, 754
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
BspACI CCGC 2 cut(s) 544, 748
BspANI GGCC 4 cut(s) 174, 286, 648, 813
BspCNI CTCAG 3 cut(s) 451, 523, 698
BspFNI CGCG 2 cut(s) 544, 835
BspLI GGNNCC 3 cut(s) 648, 649, 707
BspPI GGATC 4 cut(s) 205, 258, 284, 630
BspT107I GGYRCC 1 cut(s) 705
BsrBI CCGCTC 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 827
BsrGI TGTACA 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 4 cut(s) 274, 361, 418, 441
BssMI GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 3 cut(s) 361, 418, 441
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 2 cut(s) 275, 807
Bst4CI ACNGT 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 549, 750, 833
BstDEI CTNAG 3 cut(s) 459, 510, 685
BstF5I GGATG 2 cut(s) 90, 469
BstFNI CGCG 2 cut(s) 544, 835
BstHHI GCGC 2 cut(s) 544, 837
BstKTI GATC 7 cut(s) 200, 266, 292, 335, 625, 727, 778
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
BstMWI GCNNNNNNNGC 9 cut(s) 53, 464, 473, 506, 539, 548, 645, 686, 689
BstNI CCWGG 2 cut(s) 275, 807
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 3 cut(s) 273, 590, 805
BstSFI CTRYAG 1 cut(s) 739
BstSLI GKGCMC 2 cut(s) 650, 708
BstUI CGCG 2 cut(s) 544, 835
BstV1I GCAGC 7 cut(s) 34, 37, 40, 607, 651, 676, 692
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 4 cut(s) 174, 286, 648, 813
BtsCI GGATG 2 cut(s) 90, 469
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 549, 750, 833
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 2 cut(s) 544, 837
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 5 cut(s) 172, 358, 646, 647, 797
Csp6I GTAC 3 cut(s) 232, 604, 667
CviAII CATG 3 cut(s) 548, 643, 779
CviQI GTAC 3 cut(s) 232, 604, 667
DdeI CTNAG 3 cut(s) 459, 510, 685
DpnI GATC 7 cut(s) 199, 265, 291, 334, 624, 726, 777
DpnII GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
Eco130I CCWWGG 3 cut(s) 361, 418, 441
Eco147I AGGCCT 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 650, 754
Eco47I GGWCC 2 cut(s) 358, 797
EcoO109I RGGNCCY 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 273, 805
EcoT14I CCWWGG 3 cut(s) 361, 418, 441
EcoT22I ATGCAT 2 cut(s) 66, 157
EcoT38I GRGCYC 2 cut(s) 650, 754
ErhI CCWWGG 3 cut(s) 361, 418, 441
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 3 cut(s) 551, 646, 782
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 547, 642, 778
FauI CCCGC 1 cut(s) 741
FauNDI CATATG 4 cut(s) 43, 69, 151, 228
FbaI TGATCA 2 cut(s) 724, 775
Fnu4HI GCNGC 8 cut(s) 48, 51, 54, 545, 596, 640, 681, 690
FokI GGATG 2 cut(s) 97, 476
FriOI GRGCYC 2 cut(s) 650, 754
Fsp4HI GCNGC 8 cut(s) 48, 51, 54, 545, 596, 640, 681, 690
FspBI CTAG 4 cut(s) 99, 477, 527, 792
GlaI GCGC 2 cut(s) 543, 836
GluI GCNGC 8 cut(s) 48, 51, 54, 545, 596, 640, 681, 690
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 4 cut(s) 174, 286, 648, 813
HapII CCGG 2 cut(s) 592, 828
HhaI GCGC 2 cut(s) 544, 837
Hin1II CATG 3 cut(s) 551, 646, 782
Hin6I GCGC 2 cut(s) 542, 835
HinP1I GCGC 2 cut(s) 542, 835
HinfI GANTC 4 cut(s) 26, 326, 581, 734
HpaII CCGG 2 cut(s) 592, 828
HphI GGTGA 2 cut(s) 35, 263
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 60, 169, 655
Hpy188III TCNNGA 5 cut(s) 30, 134, 261, 330, 773
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 5 cut(s) 104, 136, 233, 390, 695
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 5 cut(s) 64, 155, 467, 551, 680
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 464, 473, 506, 539, 548, 645, 686, 689
HpyF3I CTNAG 3 cut(s) 459, 510, 685
Hsp92II CATG 3 cut(s) 551, 646, 782
HspAI GCGC 2 cut(s) 542, 835
Ksp22I TGATCA 2 cut(s) 724, 775
Kzo9I GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
LmnI GCTCC 2 cut(s) 61, 88
Lsp1109I GCAGC 7 cut(s) 34, 37, 40, 607, 651, 676, 692
LweI GCATC 7 cut(s) 51, 73, 164, 230, 445, 454, 607
MaeI CTAG 4 cut(s) 99, 477, 527, 792
MaeIII GTNAC 1 cut(s) 626
MalI GATC 7 cut(s) 199, 265, 291, 334, 624, 726, 777
MbiI CCGCTC 1 cut(s) 748
MboI GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
MboII GAAGA 4 cut(s) 150, 362, 410, 530
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 4 cut(s) 93, 650, 708, 754
MluCI AATT 3 cut(s) 413, 492, 566
MlyI GAGTC 1 cut(s) 743
Mph1103I ATGCAT 2 cut(s) 66, 157
MroXI GAANNNNTTC 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 2 cut(s) 592, 828
MspR9I CCNGG 3 cut(s) 275, 592, 807
MvaI CCWGG 2 cut(s) 275, 807
MvnI CGCG 2 cut(s) 544, 835
MwoI GCNNNNNNNGC 9 cut(s) 53, 464, 473, 506, 539, 548, 645, 686, 689
NciI CCSGG 1 cut(s) 592
NdeI CATATG 4 cut(s) 43, 69, 151, 228
NdeII GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
NlaIII CATG 3 cut(s) 551, 646, 782
NlaIV GGNNCC 3 cut(s) 648, 649, 707
NmeAIII GCCGAG 1 cut(s) 839
NsiI ATGCAT 2 cut(s) 66, 157
NspI RCATGY 1 cut(s) 551
PaeI GCATGC 1 cut(s) 551
PceI AGGCCT 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 3 cut(s) 26, 326, 581
PfoI TCCNGGA 1 cut(s) 805
PkrI GCNGC 8 cut(s) 49, 52, 55, 546, 597, 641, 682, 691
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp6I CCWGG 2 cut(s) 273, 805
PspGI CCWGG 2 cut(s) 273, 805
PspN4I GGNNCC 3 cut(s) 648, 649, 707
PspOMI GGGCCC 1 cut(s) 646
PspPI GGNCC 5 cut(s) 172, 358, 646, 647, 797
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 3 cut(s) 233, 605, 668
RsaNI GTAC 3 cut(s) 232, 604, 667
SatI GCNGC 8 cut(s) 48, 51, 54, 545, 596, 640, 681, 690
Sau3AI GATC 7 cut(s) 197, 263, 289, 332, 622, 724, 775
Sau96I GGNCC 5 cut(s) 172, 358, 646, 647, 797
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 3 cut(s) 275, 592, 807
SduI GDGCHC 4 cut(s) 93, 650, 708, 754
SetI ASST 5 cut(s) 244, 363, 691, 769, 799
SfaNI GCATC 7 cut(s) 51, 73, 164, 230, 445, 454, 607
SfcI CTRYAG 1 cut(s) 739
SinI GGWCC 2 cut(s) 358, 797
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SpeI ACTAGT 1 cut(s) 526
SphI GCATGC 1 cut(s) 551
Sse9I AATT 3 cut(s) 413, 492, 566
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 2 cut(s) 544, 748
SspMI CTAG 4 cut(s) 99, 477, 527, 792
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 3 cut(s) 273, 590, 805
StyI CCWWGG 3 cut(s) 361, 418, 441
TaaI ACNGT 1 cut(s) 671
TaqI TCGA 1 cut(s) 754
TasI AATT 3 cut(s) 413, 492, 566
TatI WGTACW 1 cut(s) 231
TauI GCSGC 1 cut(s) 547
TfiI GAWTC 3 cut(s) 26, 326, 581
TscAI CASTG 1 cut(s) 676
TseI GCWGC 7 cut(s) 47, 50, 53, 595, 639, 680, 689
TspDTI ATGAA 3 cut(s) 252, 363, 531
TspRI CASTG 1 cut(s) 676
VpaK11BI GGWCC 2 cut(s) 358, 797
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 4 cut(s) 99, 477, 527, 792
Zsp2I ATGCAT 2 cut(s) 66, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.