Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009471

Physical Location & Seq

Genomic Coordinates Forward (+)

7650582 .. 7651851

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22875.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCACCATCACGTAACATCGTTGTAGCCACCGGTTTGGTTCTTTTCGCATCTGCAGGCTTAGCTTTCCCCTTTTACATGGCATCTTCGAAACAACCAGTTATCGATCCAACAAAACCATTACCTCCTCAAGCAACTTTTAGAGGACCTTACATAAACACAGGCTCACGCGATGTTGGACCTGATCATCGAACTTACCCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.45

Weight (kDa)

10.11

Isoelectric Point (pI)

63.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22875 AT5G22875 AT5G22875
fragaria_vesca	FvH4_3g30550 FvH4_3g30550 FvH4_3g30550 FvH4_3g30550
malus_domestica	MD03G1128500.v1.1 MD11G1149300.v1.1
prunus_persica	Prupe.6G113700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056551
rosa_laevigata	RLG00000035104
rosa_multiflora	Rmu_co8378101.1_g000001 Rmu_sc0000366.1_g000045 Rmu_sc0006045.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023790
rosa_rugosa	Rorug05G0300700.1
rosa_samantha	Rh5AG371100 Rh5BG382200 Rh5CG405400 Rh5DG395200
rosa_wichuraiana	Rw5G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	171
AclWI	GGATC	1 cut(s)	101
AgeI	ACCGGT	1 cut(s)	32
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	101
AsiGI	ACCGGT	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	146, 179
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	146, 179
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	61
Bme18I	GGWCC	2 cut(s)	146, 179
BmgT120I	GGNCC	2 cut(s)	146, 179
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	59, 92
Bpu1102I	GCTNAGC	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	106, 184
Bsp1720I	GCTNAGC	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	2 cut(s)	106, 184
BstBAI	YACGTR	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	109, 187
BstMBI	GATC	2 cut(s)	106, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	146, 179
ClaI	ATCGAT	1 cut(s)	105
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	4 cut(s)	29, 60, 65, 165
CviKI_1	RGCY	4 cut(s)	29, 60, 65, 165
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	108, 186
DpnII	GATC	2 cut(s)	106, 184
Eco47I	GGWCC	2 cut(s)	146, 179
EcoO109I	RGGNCCY	1 cut(s)	146
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 155
FatI	CATG	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	184
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	82
HpaII	CCGG	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	106, 184
LpnPI	CCDG	5 cut(s)	42, 46, 111, 147, 195
LweI	GCATC	2 cut(s)	59, 92
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	108, 186
MboI	GATC	2 cut(s)	106, 184
MboII	GAAGA	1 cut(s)	78
MmeI	TCCRAC	2 cut(s)	134, 157
MnlI	CCTC	3 cut(s)	135, 137, 138
MspI	CCGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	106, 184
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	146, 179
PspPPI	RGGWCCY	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	106, 184
Sau96I	GGNCC	2 cut(s)	146, 179
SetI	ASST	5 cut(s)	16, 67, 127, 151, 184
SfaNI	GCATC	2 cut(s)	59, 92
SfcI	CTRYAG	1 cut(s)	54
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	146, 179
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	89, 105, 190
VpaK11BI	GGWCC	2 cut(s)	146, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.