Rmu_sc0006045.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006045.1
Physical Location & Seq
Forward (+)
6965 .. 7256
292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006045.1_g000001.1.cds

Sequence Viewer

Length: 210 bp
atggcactatcacggaatgctattgttgctactggcttggtagttttcgcatctgcggggctggcatttcccttttacatggcgtcatcaaaaacacctgttatcgatccaacaaagccactgtcacctcaggcaacttttcgagggccttatataaacactggttcgcgtgatgttggatctgattgtcagacctacccaaagaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.31

Weight (kDa)

9.65

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 56
AclWI GGATC 2 cut(s) 101, 187
AcyI GRCGYC 1 cut(s) 83
AlwI GGATC 2 cut(s) 101, 187
AoxI GGCC 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 117
AxyI CCTNAGG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 37, 166
Bse21I CCTNAGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 105
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 37, 166
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 105
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 106, 179
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 142
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 169
BspPI GGATC 2 cut(s) 101, 187
BsrI ACTGG 2 cut(s) 37, 166
BssMI GATC 2 cut(s) 106, 179
BssNI GRCGYC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 2 cut(s) 109, 182
BstMBI GATC 2 cut(s) 106, 179
BstMWI GCNNNNNNNGC 2 cut(s) 26, 62
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 119, 159
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 72
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 36, 61, 118, 148
CviKI_1 RGCY 4 cut(s) 36, 61, 118, 148
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 108, 181
DpnII GATC 2 cut(s) 106, 179
Eco81I CCTNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 146
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 80, 153, 155
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 82
HphI GGTGA 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 184, 192
HpyCH4III ACNGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 62
HpyF3I CTNAG 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 106, 179
LpnPI CCDG 5 cut(s) 18, 47, 111, 116, 147
LweI GCATC 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 123
MalI GATC 2 cut(s) 108, 181
MboI GATC 2 cut(s) 106, 179
MflI RGATCY 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 134, 157
MnlI CCTC 2 cut(s) 137, 138
Mva1269I GAATGC 1 cut(s) 22
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 26, 62
NdeII GATC 2 cut(s) 106, 179
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 123
PctI GAATGC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 179
Sau3AI GATC 2 cut(s) 106, 179
Sau96I GGNCC 1 cut(s) 146
SetI ASST 3 cut(s) 100, 130, 197
SfaNI GCATC 1 cut(s) 59
SsiI CCGC 1 cut(s) 56
TaaI ACNGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 105, 142
TscAI CASTG 2 cut(s) 126, 166
TseFI GTSAC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 126, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.