Rh5AG371100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
62870616 .. 62880301
9686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG371100.1

Sequence Viewer

Length: 252 bp
ATGTCACCTGTGAAGATATATAGTTCTACTTTGGTAGTCTTAATGGCCCTATCACGGAATGCTATTGTTGCTACTGGCTTGGTAGTTTTCGCATCTGCGGGGTTGGCATTTCCCTTTTACATGGCGTCATCAAAAACGCCTGTTATCGATCCAACAAAGCCACTGTCACCTCAGGCAACTTTTCGAGGGCCTTACATAAACACTGGTTCGCGTGATGTTGGACCTGATCATCAGACCTACCCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.87

Weight (kDa)

9.9

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 211
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 54
AlwI GGATC 1 cut(s) 143
AoxI GGCC 2 cut(s) 45, 188
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspS9I GGNCC 3 cut(s) 46, 188, 221
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 46, 188, 221
BmsI GCATC 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 79, 208
Bse21I CCTNAGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 79, 208
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 47, 190
BshVI ATCGAT 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 54
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 47, 190
Bsp143I GATC 2 cut(s) 148, 226
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 47, 190
BspCNI CTCAG 1 cut(s) 184
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 1 cut(s) 211
BspPI GGATC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 79, 208
BssMI GATC 2 cut(s) 148, 226
BssNI GRCGYC 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 2 cut(s) 151, 229
BstMBI GATC 2 cut(s) 148, 226
BstMWI GCNNNNNNNGC 2 cut(s) 68, 104
BstUI CGCG 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 47, 190
BsuTUI ATCGAT 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 161, 201
Cfr13I GGNCC 3 cut(s) 46, 188, 221
ClaI ATCGAT 1 cut(s) 147
CseI GACGC 1 cut(s) 114
CviAII CATG 1 cut(s) 121
CviJI RGCY 4 cut(s) 47, 78, 160, 190
CviKI_1 RGCY 4 cut(s) 47, 78, 160, 190
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 150, 228
DpnII GATC 2 cut(s) 148, 226
Eco47I GGWCC 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 188
FaeI CATG 1 cut(s) 124
FaiI YATR 4 cut(s) 19, 21, 122, 197
FatI CATG 1 cut(s) 120
FauI CCCGC 1 cut(s) 91
FbaI TGATCA 1 cut(s) 226
HaeIII GGCC 2 cut(s) 47, 190
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 1 cut(s) 124
HphI GGTGA 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 104
HpyF3I CTNAG 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 148, 226
LpnPI CCDG 6 cut(s) 21, 60, 153, 158, 189, 237
LweI GCATC 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 3, 165
MalI GATC 2 cut(s) 150, 228
MboI GATC 2 cut(s) 148, 226
MboII GAAGA 1 cut(s) 25
MmeI TCCRAC 2 cut(s) 176, 199
MnlI CCTC 2 cut(s) 179, 180
MseI TTAA 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 68, 104
NdeII GATC 2 cut(s) 148, 226
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 3, 165
PctI GAATGC 1 cut(s) 64
PspPI GGNCC 3 cut(s) 46, 188, 221
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 2 cut(s) 148, 226
Sau96I GGNCC 3 cut(s) 46, 188, 221
SetI ASST 4 cut(s) 10, 172, 226, 239
SfaNI GCATC 1 cut(s) 101
SinI GGWCC 1 cut(s) 221
SsiI CCGC 1 cut(s) 98
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 147, 184
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 2 cut(s) 168, 208
TseFI GTSAC 2 cut(s) 3, 165
Tsp45I GTSAC 2 cut(s) 3, 165
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 168, 208
VpaK11BI GGWCC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.