Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009471

Physical Location & Seq

Genomic Coordinates Forward (+)

60718880 .. 60722549

Gene Structure 3670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG382200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCCAAAGGAAGCCACATTTTAGCCAAAGACTCGCTGTCAAGTTTTTTTGGCTTCCTACCCTGCGGGGGAGCTAGAGTTGCAAATTTGCGGCCTTTGCACTCCCCCAGCCTAAACCCAAATCCAAGTCTCCGGCGACCAATCGCCGTCATTTGGAAACTGACTCAGATATATAGTTCTACTTCGGTAGTCTTAATGGCACTATCACGGAATGCTATTGTTGCTACTGGCTTGGTAGTTTTCGCATCTGCGGGGCTGGCATTTCCCTTTTACATGGCGTCATCAAAAACACCTGTTATCGATCCAACAAAGCCACTGTCACCTCAGGCAACTTTTCGAGGACCTTATATAAACACTGGTTCGCGTGATGTTGGACCTGATTGTCAGACCTACCCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.34

Weight (kDa)

10.24

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22875 AT5G22875 AT5G22875
fragaria_vesca	FvH4_3g30550 FvH4_3g30550 FvH4_3g30550 FvH4_3g30550
malus_domestica	MD03G1128500.v1.1 MD11G1149300.v1.1
prunus_persica	Prupe.6G113700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056551
rosa_laevigata	RLG00000035104
rosa_multiflora	Rmu_co8378101.1_g000001 Rmu_sc0000366.1_g000045 Rmu_sc0006045.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023790
rosa_rugosa	Rorug05G0300700.1
rosa_samantha	Rh5AG371100 Rh5BG382200 Rh5CG405400 Rh5DG395200
rosa_wichuraiana	Rw5G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	381
AccII	CGCG	1 cut(s)	364
AciI	CCGC	3 cut(s)	66, 91, 251
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	68, 153
AhdI	GACNNNNNGTC	1 cut(s)	37
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspS9I	GGNCC	2 cut(s)	341, 374
AsuHPI	GGTGA	1 cut(s)	312
AvaII	GGWCC	2 cut(s)	341, 374
AxyI	CCTNAGG	1 cut(s)	324
BceAI	ACGGC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	341, 374
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	341, 374
BmsI	GCATC	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 153
Bse1I	ACTGG	2 cut(s)	232, 361
Bse21I	CCTNAGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	68, 153
BseMII	CTCAG	2 cut(s)	179, 338
BseNI	ACTGG	2 cut(s)	232, 361
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	68, 153
BsmAI	GTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	3 cut(s)	66, 91, 251
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	178, 337
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	232, 361
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	165, 324
BstFNI	CGCG	1 cut(s)	364
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 97, 221, 257
BstUI	CGCG	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	314, 354
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	341, 374
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	1 cut(s)	267
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	15, 26, 54, 74, 94, 111, 231, 256, 313
CviKI_1	RGCY	9 cut(s)	15, 26, 54, 74, 94, 111, 231, 256, 313
DdeI	CTNAG	2 cut(s)	165, 324
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DrdI	GACNNNNNNGTC	1 cut(s)	381
DriI	GACNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	381
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	341, 374
Eco81I	CCTNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	341
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	172, 174, 275, 348, 350
FatI	CATG	1 cut(s)	273
FauI	CCCGC	2 cut(s)	59, 244
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	2 cut(s)	32, 163
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	168, 387
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	83, 100
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 97, 221, 257
HpyF3I	CTNAG	2 cut(s)	165, 324
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	9 cut(s)	76, 121, 146, 213, 242, 306, 311, 342, 390
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	26, 157
MmeI	TCCRAC	2 cut(s)	329, 352
MnlI	CCTC	2 cut(s)	332, 333
MseI	TTAA	1 cut(s)	194
MspI	CCGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	217
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	80, 97, 221, 257
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	2 cut(s)	26, 157
PpsI	GAGTC	2 cut(s)	26, 157
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	341, 374
PspPPI	RGGWCCY	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	341, 374
SchI	GAGTC	2 cut(s)	26, 157
SetI	ASST	6 cut(s)	76, 295, 325, 346, 379, 392
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	2 cut(s)	341, 374
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	66, 91, 251
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	300, 337
TasI	AATT	1 cut(s)	85
TauI	GCSGC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	321, 361
TseFI	GTSAC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	321, 361
VpaK11BI	GGWCC	2 cut(s)	341, 374
XapI	RAATTY	1 cut(s)	85
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.