Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009471

Physical Location & Seq

Genomic Coordinates Forward (+)

23825116 .. 23830752

Gene Structure 5637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGATTGAAGAGGGATCTTCTCTGATTAATCTTTGGGAAGGAGTCAAATTAGCGGAGACAAACTTGATGTTAGGCAGTGGAAGCTGGTGTCATTTGGAAGTCTGTCTTATATTTAAATCTACTATGGTAGTCTTAATGGCCCTATCACGAAATGCTCTTGTCGCGACTGGCTTGGTAGTTTTTGCATCTGCGGGTTTGGCATTTCCTTTTTACATGGCGTCATCAAAAACACCCGTCATCGATCCAACAAAGCCACTGTCACCTCAGGCAACTTTTCGAGGGCCGTATATGAACACTGGTTCCCGTGACGTTGGACCTGATCATCAGACATACCCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.47

Weight (kDa)

6.71

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22875 AT5G22875 AT5G22875
fragaria_vesca	FvH4_3g30550 FvH4_3g30550 FvH4_3g30550 FvH4_3g30550
malus_domestica	MD03G1128500.v1.1 MD11G1149300.v1.1
prunus_persica	Prupe.6G113700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056551
rosa_laevigata	RLG00000035104
rosa_multiflora	Rmu_co8378101.1_g000001 Rmu_sc0000366.1_g000045 Rmu_sc0006045.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023790
rosa_rugosa	Rorug05G0300700.1
rosa_samantha	Rh5AG371100 Rh5BG382200 Rh5CG405400 Rh5DG395200
rosa_wichuraiana	Rw5G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	2 cut(s)	56, 194
AclWI	GGATC	2 cut(s)	25, 239
AcyI	GRCGYC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	11
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	25, 239
AoxI	GGCC	2 cut(s)	141, 284
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	142, 284, 317
AsuHPI	GGTGA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	271
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	142, 284, 317
BmiI	GGNNCC	1 cut(s)	304
BmsI	GCATC	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	175, 304
Bse21I	CCTNAGG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	175, 304
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	143, 286
BshVI	ATCGAT	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	143, 286
Bsp143I	GATC	3 cut(s)	17, 244, 322
Bsp68I	TCGCGA	1 cut(s)	167
BspACI	CCGC	2 cut(s)	56, 194
BspANI	GGCC	2 cut(s)	143, 286
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	25, 239
BsrI	ACTGG	2 cut(s)	175, 304
BssMI	GATC	3 cut(s)	17, 244, 322
BssNI	GRCGYC	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	167
BstKTI	GATC	3 cut(s)	20, 247, 325
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	17, 244, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 164, 200
BstUI	CGCG	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	143, 286
BsuTUI	ATCGAT	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	85, 257, 297
BtuMI	TCGCGA	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	142, 284, 317
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	210
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	5 cut(s)	87, 143, 174, 256, 286
CviKI_1	RGCY	5 cut(s)	87, 143, 174, 256, 286
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	3 cut(s)	19, 246, 324
DpnII	GATC	3 cut(s)	17, 244, 322
DraI	TTTAAA	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	317
Eco81I	CCTNAGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	220
FaiI	YATR	6 cut(s)	113, 128, 218, 291, 293, 334
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	143, 286
HgaI	GACGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	27, 330
Hpy188III	TCNNGA	2 cut(s)	150, 166
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 164, 200
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	17, 244, 322
LpnPI	CCDG	5 cut(s)	73, 156, 254, 285, 333
LweI	GCATC	1 cut(s)	197
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	261, 308
MalI	GATC	3 cut(s)	19, 246, 324
MboI	GATC	3 cut(s)	17, 244, 322
MboII	GAAGA	2 cut(s)	12, 23
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	2 cut(s)	272, 295
MnlI	CCTC	3 cut(s)	7, 275, 276
MseI	TTAA	3 cut(s)	30, 117, 137
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	84, 164, 200
NdeII	GATC	3 cut(s)	17, 244, 322
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	261, 308
NruI	TCGCGA	1 cut(s)	167
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	142, 284, 317
PsuI	RGATCY	1 cut(s)	17
RruI	TCGCGA	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	30, 117, 137
Sau3AI	GATC	3 cut(s)	17, 244, 322
Sau96I	GGNCC	3 cut(s)	142, 284, 317
SchI	GAGTC	1 cut(s)	54
SetI	ASST	4 cut(s)	89, 268, 315, 322
SfaNI	GCATC	1 cut(s)	197
SinI	GGWCC	1 cut(s)	317
SmiI	ATTTAAAT	1 cut(s)	118
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	2 cut(s)	56, 194
SwaI	ATTTAAAT	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	243, 280
TasI	AATT	1 cut(s)	50
Tru1I	TTAA	3 cut(s)	30, 117, 137
Tru9I	TTAA	3 cut(s)	30, 117, 137
TscAI	CASTG	3 cut(s)	85, 264, 304
TseFI	GTSAC	2 cut(s)	261, 308
Tsp45I	GTSAC	2 cut(s)	261, 308
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	85, 264, 304
VpaK11BI	GGWCC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.