Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009471

Physical Location & Seq

Genomic Coordinates Forward (+)

59945381 .. 59948937

Gene Structure 3557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATGCTGTTAAGTTTTTTTGCTTCCTTCCCTGCGGGGGAGCTAGAGTTGCAAATTTGCGGCCTTTGCACTCGCCCAGCCTAAACCCAAATCCAAGTCTCCGGCGACCAATCGCCGTCATTTGGAAACTGACTCAGATATATAGTTCTACTTCGGTAGTCTTAATGGCCCTATCACGGAATGCTATTGTTGCTACTGGCTTGGTAGTTTTCGCATCTGCGGGGTTGGCATTTCCCTTTTACATGGCGTCATCAAAAACGCCTGTTATCGATCCAACAAAGCCACTATCACCTCAGGCAACTTTTCGAGGGCCTTACATAAACACTGGTTCGCGTGACGTTGGACCTGATCATCAGACCTACCCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.44

Weight (kDa)

10.35

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22875 AT5G22875 AT5G22875
fragaria_vesca	FvH4_3g30550 FvH4_3g30550 FvH4_3g30550 FvH4_3g30550
malus_domestica	MD03G1128500.v1.1 MD11G1149300.v1.1
prunus_persica	Prupe.6G113700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056551
rosa_laevigata	RLG00000035104
rosa_multiflora	Rmu_co8378101.1_g000001 Rmu_sc0000366.1_g000045 Rmu_sc0006045.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023790
rosa_rugosa	Rorug05G0300700.1
rosa_samantha	Rh5AG371100 Rh5BG382200 Rh5CG405400 Rh5DG395200
rosa_wichuraiana	Rw5G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	3 cut(s)	36, 61, 221
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	38, 123, 177
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	3 cut(s)	62, 168, 311
ApoI	RAATTY	1 cut(s)	55
AspS9I	GGNCC	3 cut(s)	169, 311, 344
AsuHPI	GGTGA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	294
BceAI	ACGGC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	169, 311, 344
BmsI	GCATC	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 123, 177
Bse1I	ACTGG	2 cut(s)	202, 331
Bse21I	CCTNAGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	38, 123, 177
BseMII	CTCAG	2 cut(s)	149, 308
BseNI	ACTGG	2 cut(s)	202, 331
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	3 cut(s)	64, 170, 313
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	38, 123, 177
BsmAI	GTCTC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	64, 170, 313
Bsp143I	GATC	2 cut(s)	271, 349
BspACI	CCGC	3 cut(s)	36, 61, 221
BspANI	GGCC	3 cut(s)	64, 170, 313
BspCNI	CTCAG	2 cut(s)	148, 307
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	202, 331
BssMI	GATC	2 cut(s)	271, 349
BssNI	GRCGYC	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	135, 294
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	2 cut(s)	274, 352
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	271, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 67, 191, 227
BstNSI	RCATGY	1 cut(s)	8
BstUI	CGCG	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	64, 170, 313
BsuTUI	ATCGAT	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	169, 311, 344
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	237
CviAII	CATG	2 cut(s)	5, 244
CviJI	RGCY	7 cut(s)	44, 64, 81, 170, 201, 283, 313
CviKI_1	RGCY	7 cut(s)	44, 64, 81, 170, 201, 283, 313
DdeI	CTNAG	2 cut(s)	135, 294
DpnI	GATC	2 cut(s)	273, 351
DpnII	GATC	2 cut(s)	271, 349
Eco47I	GGWCC	1 cut(s)	344
Eco81I	CCTNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 247
FaiI	YATR	5 cut(s)	6, 142, 144, 245, 320
FatI	CATG	2 cut(s)	4, 243
FauI	CCCGC	2 cut(s)	29, 214
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	64, 170, 313
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	8, 247
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	138, 357
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	4, 53, 70
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 67, 191, 227
HpyF3I	CTNAG	2 cut(s)	135, 294
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	8, 247
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	271, 349
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	46, 91, 116, 183, 276, 281, 312, 360
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	2 cut(s)	273, 351
MboI	GATC	2 cut(s)	271, 349
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	299, 322
MnlI	CCTC	2 cut(s)	302, 303
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	12, 164
MspI	CCGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	187
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	4 cut(s)	50, 67, 191, 227
NdeII	GATC	2 cut(s)	271, 349
NlaIII	CATG	2 cut(s)	8, 247
NmuCI	GTSAC	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	77
PspPI	GGNCC	3 cut(s)	169, 311, 344
SaqAI	TTAA	2 cut(s)	12, 164
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	271, 349
Sau96I	GGNCC	3 cut(s)	169, 311, 344
SchI	GAGTC	1 cut(s)	127
SetI	ASST	5 cut(s)	46, 295, 342, 349, 362
SfaNI	GCATC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	344
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	3 cut(s)	36, 61, 221
SspMI	CTAG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	270, 307
TasI	AATT	1 cut(s)	55
TauI	GCSGC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	12, 164
Tru9I	TTAA	2 cut(s)	12, 164
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.