Rh5DG395200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
62006812 .. 62010253
3442 bp
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UTR
Exon/CDS
Intron
Rh5DG395200.1

Sequence Viewer

Length: 210 bp
ATGGCACTATCACGGAATGCTATTGTTGCTACTGGCTTGGTAGTTTTCGCATCTGCGGGGCTGGCATTTCCCTTTTACATGGCGTCATCAAAAACACCTGTTATCGATCCAACAAAGCCACTGTCACCTCAGGCAACTTTTCGAGGGCCTTATATAAACACTGGTTCACGTGATGTTGGACCTGATCGTCAGACCTACCCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.37

Weight (kDa)

10.11

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 186
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 101
AcvI CACGTG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 83
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 2 cut(s) 146, 179
AsuHPI GGTGA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 129
BbrPI CACGTG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 146, 179
BmsI GCATC 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 37, 166
Bse21I CCTNAGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 105
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 37, 166
BshFI GGCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 105
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 2 cut(s) 106, 184
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 142
BspDI ATCGAT 1 cut(s) 105
BspPI GGATC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 37, 166
BssMI GATC 2 cut(s) 106, 184
BssNI GRCGYC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 129
BstKTI GATC 2 cut(s) 109, 187
BstMBI GATC 2 cut(s) 106, 184
BstMWI GCNNNNNNNGC 2 cut(s) 26, 62
Bsu15I ATCGAT 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 119, 159
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 146, 179
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 72
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 36, 61, 118, 148
CviKI_1 RGCY 4 cut(s) 36, 61, 118, 148
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 108, 186
DpnII GATC 2 cut(s) 106, 184
DrdI GACNNNNNNGTC 1 cut(s) 186
DseDI GACNNNNNNGTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 146
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 80, 153, 155
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 82
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 62
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 106, 184
LpnPI CCDG 6 cut(s) 18, 47, 111, 116, 147, 195
LweI GCATC 1 cut(s) 59
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 123
MalI GATC 2 cut(s) 108, 186
MboI GATC 2 cut(s) 106, 184
MmeI TCCRAC 2 cut(s) 134, 157
MnlI CCTC 2 cut(s) 137, 138
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 26, 62
NdeII GATC 2 cut(s) 106, 184
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 123
PctI GAATGC 1 cut(s) 22
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 170
PspCI CACGTG 1 cut(s) 170
PspPI GGNCC 2 cut(s) 146, 179
Sau3AI GATC 2 cut(s) 106, 184
Sau96I GGNCC 2 cut(s) 146, 179
SetI ASST 5 cut(s) 100, 130, 172, 184, 197
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 179
SsiI CCGC 1 cut(s) 56
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 105, 142
TscAI CASTG 2 cut(s) 126, 166
TseFI GTSAC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 126, 166
VpaK11BI GGWCC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.