RLG00000035104

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009471
Physical Location & Seq
Forward (+)
60953065 .. 60957464
4400 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035104

Sequence Viewer

Length: 345 bp
ATGATGATGCGACTGACCTTCTTCAGTTTCTTTTCCTTGCTGTGTTGCAGACTCCGACGAGCTGTTATTTCTCTCTGCACCAATCAGCGTCATTTGGAACCTGACTCAGATATTAGTTCTACTTTGGTAGTCTTAATGGCCCTATCACGGAATGCTATTGTTGCTACTGGCTTGGTGGTTTTCGCGTCTGCGGGGTTGGCATTTCCCTTTTACATGGCCTCATCAAAAACGCCTGTTATCGATCCAACAAAGCCGCTGTCACCTCAGGCAACTTTTCGAGGGCCTTATATAAACACTGGTTCACGTGATGTTGGACCTGATCATCATACCTACCCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.6

Weight (kDa)

9.73

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 2 cut(s) 191, 254
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 7
AcvI CACGTG 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 236
AoxI GGCC 3 cut(s) 138, 216, 281
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspS9I GGNCC 3 cut(s) 139, 281, 314
AsuHPI GGTGA 1 cut(s) 252
AvaII GGWCC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 264
BbrPI CACGTG 1 cut(s) 305
BclI TGATCA 1 cut(s) 319
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 139, 281, 314
BmiI GGNNCC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 172, 301
Bse21I CCTNAGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 120, 278
BseNI ACTGG 2 cut(s) 172, 301
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 3 cut(s) 140, 218, 283
BshVI ATCGAT 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 147
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 3 cut(s) 140, 218, 283
Bsp143I GATC 2 cut(s) 241, 319
BspACI CCGC 2 cut(s) 191, 254
BspANI GGCC 3 cut(s) 140, 218, 283
BspCNI CTCAG 2 cut(s) 119, 277
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 172, 301
BssMI GATC 2 cut(s) 241, 319
BstBAI YACGTR 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 106, 264
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 2 cut(s) 244, 322
BstMBI GATC 2 cut(s) 241, 319
BstMWI GCNNNNNNNGC 2 cut(s) 161, 197
BstUI CGCG 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 3 cut(s) 140, 218, 283
BsuTUI ATCGAT 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 294
Cfr13I GGNCC 3 cut(s) 139, 281, 314
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 2 cut(s) 77, 174
CviAII CATG 1 cut(s) 214
CviJI RGCY 6 cut(s) 62, 140, 171, 218, 253, 283
CviKI_1 RGCY 6 cut(s) 62, 140, 171, 218, 253, 283
DdeI CTNAG 2 cut(s) 106, 264
DpnI GATC 2 cut(s) 243, 321
DpnII GATC 2 cut(s) 241, 319
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 281
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 215, 288, 290, 327
FatI CATG 1 cut(s) 213
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 3 cut(s) 140, 218, 283
HgaI GACGC 2 cut(s) 77, 174
Hin1II CATG 1 cut(s) 217
HinfI GANTC 2 cut(s) 51, 104
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 56, 109
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 48, 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 197
HpyF3I CTNAG 2 cut(s) 106, 264
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 2 cut(s) 241, 319
LpnPI CCDG 6 cut(s) 114, 153, 246, 251, 282, 330
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 258
MalI GATC 2 cut(s) 243, 321
MboI GATC 2 cut(s) 241, 319
MboII GAAGA 1 cut(s) 13
MlyI GAGTC 2 cut(s) 45, 98
MmeI TCCRAC 3 cut(s) 79, 269, 292
MnlI CCTC 3 cut(s) 229, 272, 273
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 157
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 161, 197
NdeII GATC 2 cut(s) 241, 319
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 258
PctI GAATGC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 2 cut(s) 45, 98
PmaCI CACGTG 1 cut(s) 305
PmlI CACGTG 1 cut(s) 305
PpsI GAGTC 2 cut(s) 45, 98
Ppu21I YACGTR 1 cut(s) 305
PspCI CACGTG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 139, 281, 314
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 2 cut(s) 241, 319
Sau96I GGNCC 3 cut(s) 139, 281, 314
SchI GAGTC 2 cut(s) 45, 98
SetI ASST 7 cut(s) 20, 64, 103, 265, 307, 319, 332
SinI GGWCC 1 cut(s) 314
SsiI CCGC 2 cut(s) 191, 254
TaiI ACGT 1 cut(s) 307
TaqI TCGA 2 cut(s) 240, 277
TauI GCSGC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.