Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009471

Physical Location & Seq

Genomic Coordinates Reverse (-)

14139475 .. 14139725

Gene Structure 251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1149300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCCCGGTCACGGAATGCAGTTGTTGCTACTGGTTTGGTGATGTTTGCAGCTGCAGGTTTGGCATTTCCGTTTTACATGGCGTCATCGCCAAAGCCTGTCATTGACCCATCAAAGCCGCTATCACCCCAGGCAACTTTTCGAGGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

51

Amino Acids

5.22

Weight (kDa)

11.0

Isoelectric Point (pI)

81.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22875 AT5G22875 AT5G22875
fragaria_vesca	FvH4_3g30550 FvH4_3g30550 FvH4_3g30550 FvH4_3g30550
malus_domestica	MD03G1128500.v1.1 MD11G1149300.v1.1
prunus_persica	Prupe.6G113700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056551
rosa_laevigata	RLG00000035104
rosa_multiflora	Rmu_co8378101.1_g000001 Rmu_sc0000366.1_g000045 Rmu_sc0006045.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023790
rosa_rugosa	Rorug05G0300700.1
rosa_samantha	Rh5AG371100 Rh5BG382200 Rh5CG405400 Rh5DG395200
rosa_wichuraiana	Rw5G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AciI	CCGC	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AoxI	GGCC	2 cut(s)	3, 146
ApeKI	GCWGC	2 cut(s)	50, 53
AspS9I	GGNCC	2 cut(s)	4, 146
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	52, 117
BbvI	GCAGC	2 cut(s)	40, 62
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	7
BfmI	CTRYAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	51, 54, 119
BlsI	GCNGC	3 cut(s)	52, 55, 120
Bme1390I	CCNGG	2 cut(s)	7, 131
BmgT120I	GGNCC	2 cut(s)	4, 146
BmrFI	CCNGG	2 cut(s)	7, 131
BpuMI	CCSGG	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	40, 62
BshFI	GGCC	2 cut(s)	5, 148
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 148
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	5, 148
BspMAI	CTGCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 62
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	5, 129
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	40, 62
BsuRI	GGCC	2 cut(s)	5, 148
BtgZI	GCGATG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	4, 146
CseI	GACGC	1 cut(s)	72
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	5 cut(s)	5, 53, 97, 118, 148
CviKI_1	RGCY	5 cut(s)	5, 53, 97, 118, 148
DdeI	CTNAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	82
FaiI	YATR	1 cut(s)	80
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	51, 54, 119
Fsp4HI	GCNGC	3 cut(s)	51, 54, 119
GluI	GCNGC	3 cut(s)	51, 54, 119
HaeIII	GGCC	2 cut(s)	5, 148
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	82
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	2 cut(s)	52, 117
HpyCH4V	TGCA	3 cut(s)	20, 50, 56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 62
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	82
LpnPI	CCDG	6 cut(s)	18, 20, 42, 111, 116, 143
Lsp1109I	GCAGC	2 cut(s)	40, 62
MaeIII	GTNAC	1 cut(s)	9
MnlI	CCTC	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	7, 131
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	26, 62
NciI	CCSGG	1 cut(s)	7
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	52, 55, 120
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	4, 146
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	53
SatI	GCNGC	3 cut(s)	51, 54, 119
Sau96I	GGNCC	2 cut(s)	4, 146
ScrFI	CCNGG	2 cut(s)	7, 131
SetI	ASST	2 cut(s)	55, 61
SfcI	CTRYAG	1 cut(s)	54
SgeI	CNNG	9 cut(s)	18, 19, 24, 45, 69, 91, 110, 142, 143
SsiI	CCGC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	5, 129
TaqI	TCGA	1 cut(s)	142
TauI	GCSGC	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	2 cut(s)	50, 53
Tsp45I	GTSAC	1 cut(s)	9
TspGWI	ACGGA	2 cut(s)	28, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.