AT5G23610

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002893
Physical Location & Seq
Reverse (-)
7957249 .. 7960446
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23610.2

Sequence Viewer

Length: 1500 bp
ATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAAACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTATGGCTGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCTGGAGAAGAAGAAGAAGGTAACACCTCTAGAGACAACGCCTTGGTTGAAGTCAAGTTAGAGAAGCAAGAAGAACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAGCAAGATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCTCCGAAGCACAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGCAGAGCAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTACGCGACAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTCCTTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTGTTACAATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAAACTTGAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGACTGCATCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCAAATGAAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGCAAATGAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGTGGAGATCTCAGAATCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGAAAGATAAAGTAGATCAGCAGTTACTGGGAATTTCAAACACGCTGAGCAATCTGCAGCCGAATGGGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCCAATTTGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTACCAGAGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTCCAAGATCAGTCATTGATCTCTCTCCAAGACCAGTCATTGGTCTCTCTCCAAGACCAGTCATTGGTCAACGTAGATATGCAAATGACAGAAAGCATGACTAGAGGTGAATCCAGAAGCTCCAGTCAGGAAAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATCAGATATTGACGACCCAACAATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACATGGAAAGCCAAAGCGGAGCAGCAGCTGATGGAATTATCAAACGCTGTCCTTGCTCTTAAGGGACAGAATCAACCCAACTGGCGTTACCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

499

Amino Acids

56.47

Weight (kDa)

5.91

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 124 - 206 6.3e-23 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1331
AccB7I CCANNNNNTGG 3 cut(s) 372, 1213, 1237
AccI GTMKAC 1 cut(s) 1114
AccII CGCG 4 cut(s) 35, 135, 460, 1145
AciI CCGC 4 cut(s) 33, 413, 722, 1421
AclWI GGATC 2 cut(s) 522, 653
AcsI RAATTY 4 cut(s) 651, 796, 928, 966
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 554
AfiI CCNNNNNNNGG 5 cut(s) 372, 681, 1213, 1237, 1381
AflII CTTAAG 2 cut(s) 842, 1463
AjiI CACGTC 1 cut(s) 1008
AjnI CCWGG 2 cut(s) 151, 550
AluBI AGCT 8 cut(s) 309, 680, 736, 1022, 1170, 1293, 1310, 1432
AluI AGCT 8 cut(s) 309, 680, 736, 1022, 1170, 1293, 1310, 1432
Alw21I GWGCWC 1 cut(s) 1007
Alw26I GTCTC 3 cut(s) 177, 1130, 1222
AlwI GGATC 2 cut(s) 522, 653
AlwNI CAGNNNCTG 3 cut(s) 961, 1124, 1432
AoxI GGCC 1 cut(s) 1130
ApeKI GCWGC 5 cut(s) 110, 349, 991, 1426, 1429
ApoI RAATTY 4 cut(s) 651, 796, 928, 966
ArsI GACNNNNNNTTYG 4 cut(s) 293, 325, 1042, 1074
Asp700I GAANNNNTTC 2 cut(s) 295, 830
AspLEI GCGC 2 cut(s) 135, 1147
AspS9I GGNCC 2 cut(s) 116, 1343
AsuC2I CCSGG 1 cut(s) 1323
AsuHPI GGTGA 3 cut(s) 509, 1292, 1414
AvaII GGWCC 2 cut(s) 116, 1343
BanII GRGCYC 1 cut(s) 510
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 224, 1055
Bbv12I GWGCWC 1 cut(s) 1007
BbvI GCAGC 5 cut(s) 97, 361, 1003, 1438, 1441
BccI CCATC 6 cut(s) 366, 530, 584, 682, 1103, 1429
BciT130I CCWGG 2 cut(s) 153, 552
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 1 cut(s) 1323
BcoDI GTCTC 3 cut(s) 177, 1130, 1222
BfaI CTAG 3 cut(s) 29, 180, 1275
BfmI CTRYAG 2 cut(s) 989, 1338
BfrI CTTAAG 2 cut(s) 842, 1463
BfuAI ACCTGC 1 cut(s) 1331
BglII AGATCT 2 cut(s) 284, 882
BisI GCNGC 6 cut(s) 33, 111, 350, 992, 1427, 1430
BlpI GCTNAGC 1 cut(s) 980
BlsI GCNGC 6 cut(s) 34, 112, 351, 993, 1428, 1431
Bme1390I CCNGG 3 cut(s) 153, 552, 1323
Bme18I GGWCC 2 cut(s) 116, 1343
BmgBI CACGTC 1 cut(s) 1008
BmgT120I GGNCC 2 cut(s) 116, 1343
BmiI GGNNCC 2 cut(s) 90, 672
BmrFI CCNGG 3 cut(s) 153, 552, 1323
BmrI ACTGGG 2 cut(s) 513, 971
BmsI GCATC 3 cut(s) 584, 710, 805
BmuI ACTGGG 2 cut(s) 513, 971
BpiI GAAGAC 2 cut(s) 224, 1055
BpmI CTGGAG 2 cut(s) 174, 1279
Bpu10I CCTNAGC 2 cut(s) 409, 1023
Bpu1102I GCTNAGC 1 cut(s) 980
BpuMI CCSGG 1 cut(s) 1323
BsaBI GATNNNNATC 1 cut(s) 329
BsaI GGTCTC 2 cut(s) 1130, 1222
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 5 cut(s) 372, 681, 1213, 1237, 1381
Bse1I ACTGG 6 cut(s) 508, 966, 1207, 1231, 1296, 1490
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 2 cut(s) 153, 552
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 4 cut(s) 541, 599, 693, 1102
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 5 cut(s) 372, 681, 1213, 1237, 1381
BseMII CTCAG 5 cut(s) 900, 920, 971, 1037, 1394
BseNI ACTGG 6 cut(s) 508, 966, 1207, 1231, 1296, 1490
BseXI GCAGC 5 cut(s) 97, 361, 1003, 1438, 1441
BseYI CCCAGC 1 cut(s) 676
Bsh1236I CGCG 4 cut(s) 35, 135, 460, 1145
BshFI GGCC 1 cut(s) 1132
BsiHKAI GWGCWC 1 cut(s) 1007
BsiSI CCGG 4 cut(s) 55, 119, 1133, 1322
BslFI GGGAC 1 cut(s) 1482
BslI CCNNNNNNNGG 5 cut(s) 372, 681, 1213, 1237, 1381
BsmAI GTCTC 3 cut(s) 177, 1130, 1222
BsmFI GGGAC 1 cut(s) 1482
BsnI GGCC 1 cut(s) 1132
Bso31I GGTCTC 2 cut(s) 1130, 1222
Bsp1286I GDGCHC 2 cut(s) 510, 1007
Bsp1720I GCTNAGC 1 cut(s) 980
BspACI CCGC 4 cut(s) 33, 413, 722, 1421
BspANI GGCC 1 cut(s) 1132
BspCNI CTCAG 5 cut(s) 899, 919, 972, 1036, 1393
BspFNI CGCG 4 cut(s) 35, 135, 460, 1145
BspLI GGNNCC 2 cut(s) 90, 672
BspMAI CTGCAG 2 cut(s) 993, 1342
BspMI ACCTGC 1 cut(s) 1331
BspPI GGATC 2 cut(s) 522, 653
BspTI CTTAAG 2 cut(s) 842, 1463
BspTNI GGTCTC 2 cut(s) 1130, 1222
BsrI ACTGG 6 cut(s) 508, 966, 1207, 1231, 1296, 1490
BssECI CCNNGG 1 cut(s) 192
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 153, 552
Bst4CI ACNGT 1 cut(s) 468
Bst6I CTCTTC 1 cut(s) 758
BstAFI CTTAAG 2 cut(s) 842, 1463
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 6 cut(s) 409, 886, 906, 980, 1023, 1380
BstF5I GGATG 4 cut(s) 541, 599, 693, 1102
BstFNI CGCG 4 cut(s) 35, 135, 460, 1145
BstHHI GCGC 2 cut(s) 135, 1147
BstMAI GTCTC 3 cut(s) 177, 1130, 1222
BstMWI GCNNNNNNNGC 5 cut(s) 110, 278, 349, 607, 1457
BstNI CCWGG 2 cut(s) 153, 552
BstNSI RCATGY 2 cut(s) 601, 916
BstSCI CCNGG 3 cut(s) 151, 550, 1321
BstSFI CTRYAG 2 cut(s) 989, 1338
BstUI CGCG 4 cut(s) 35, 135, 460, 1145
BstV1I GCAGC 5 cut(s) 97, 361, 1003, 1438, 1441
BstV2I GAAGAC 2 cut(s) 224, 1055
BstX2I RGATCY 2 cut(s) 284, 882
BstXI CCANNNNNNTGG 1 cut(s) 684
BstYI RGATCY 2 cut(s) 284, 882
BsuRI GGCC 1 cut(s) 1132
BtrI CACGTC 1 cut(s) 1008
BtsCI GGATG 4 cut(s) 541, 599, 693, 1102
BtsIMutI CAGTG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 1331
Cac8I GCNNGC 1 cut(s) 599
CaiI CAGNNNCTG 3 cut(s) 961, 1124, 1432
CfoI GCGC 2 cut(s) 135, 1147
Cfr13I GGNCC 2 cut(s) 116, 1343
CsiI ACCWGGT 1 cut(s) 550
CviAII CATG 7 cut(s) 532, 598, 710, 809, 913, 1270, 1407
DdeI CTNAG 6 cut(s) 409, 886, 906, 980, 1023, 1380
DraIII CACNNNGTG 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 758
EarI CTCTTC 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 2 cut(s) 1130, 1222
Eco47I GGWCC 2 cut(s) 116, 1343
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 2 cut(s) 651, 928
EcoRII CCWGG 2 cut(s) 151, 550
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 599
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 7 cut(s) 535, 601, 713, 812, 916, 1273, 1410
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 1482
FatI CATG 7 cut(s) 531, 597, 709, 808, 912, 1269, 1406
FbaI TGATCA 1 cut(s) 712
FblI GTMKAC 1 cut(s) 1114
Fnu4HI GCNGC 6 cut(s) 33, 111, 350, 992, 1427, 1430
FokI GGATG 4 cut(s) 548, 606, 700, 1109
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 6 cut(s) 33, 111, 350, 992, 1427, 1430
FspBI CTAG 3 cut(s) 29, 180, 1275
GlaI GCGC 2 cut(s) 134, 1146
GluI GCNGC 6 cut(s) 33, 111, 350, 992, 1427, 1430
GsaI CCCAGC 1 cut(s) 680
GsuI CTGGAG 2 cut(s) 174, 1279
HaeIII GGCC 1 cut(s) 1132
HapII CCGG 4 cut(s) 55, 119, 1133, 1322
HhaI GCGC 2 cut(s) 135, 1147
Hin1II CATG 7 cut(s) 535, 601, 713, 812, 916, 1273, 1410
Hin6I GCGC 2 cut(s) 133, 1145
HinP1I GCGC 2 cut(s) 133, 1145
HincII GTYRAC 2 cut(s) 897, 1243
HindII GTYRAC 2 cut(s) 897, 1243
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 9 cut(s) 98, 249, 267, 644, 890, 1283, 1318, 1378, 1474
HpaII CCGG 4 cut(s) 55, 119, 1133, 1322
HphI GGTGA 3 cut(s) 509, 1292, 1414
Hpy166II GTNNAC 3 cut(s) 897, 1115, 1243
Hpy188I TCNGA 9 cut(s) 17, 67, 84, 301, 339, 562, 696, 889, 1354
Hpy8I GTNNAC 3 cut(s) 897, 1115, 1243
HpyAV CCTTC 4 cut(s) 79, 161, 418, 1387
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 3 cut(s) 728, 1007, 1245
HpyCH4V TGCA 8 cut(s) 597, 601, 701, 818, 991, 1164, 1255, 1340
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 278, 349, 607, 1457
HpyF3I CTNAG 6 cut(s) 409, 886, 906, 980, 1023, 1380
HpySE526I ACGT 3 cut(s) 728, 1007, 1245
Hsp92II CATG 7 cut(s) 535, 601, 713, 812, 916, 1273, 1410
HspAI GCGC 2 cut(s) 133, 1145
Ksp22I TGATCA 1 cut(s) 712
LmnI GCTCC 5 cut(s) 88, 278, 1002, 1298, 1423
Lsp1109I GCAGC 5 cut(s) 97, 361, 1003, 1438, 1441
LweI GCATC 3 cut(s) 584, 710, 805
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 3 cut(s) 29, 180, 1275
MaeII ACGT 3 cut(s) 728, 1007, 1245
MaeIII GTNAC 9 cut(s) 170, 238, 454, 544, 578, 724, 957, 1402, 1490
MflI RGATCY 2 cut(s) 284, 882
MhlI GDGCHC 2 cut(s) 510, 1007
MluCI AATT 9 cut(s) 651, 796, 873, 923, 928, 966, 1030, 1057, 1439
MlyI GAGTC 3 cut(s) 261, 1312, 1372
MmeI TCCRAC 3 cut(s) 62, 830, 1175
MnlI CCTC 9 cut(s) 18, 21, 187, 307, 345, 567, 846, 1114, 1271
Mph1103I ATGCAT 1 cut(s) 599
MroXI GAANNNNTTC 2 cut(s) 295, 830
MseI TTAA 6 cut(s) 362, 390, 470, 636, 843, 1464
MslI CAYNNNNRTG 2 cut(s) 534, 813
MspA1I CMGCKG 1 cut(s) 1432
MspCI CTTAAG 2 cut(s) 842, 1463
MspI CCGG 4 cut(s) 55, 119, 1133, 1322
MspR9I CCNGG 3 cut(s) 153, 552, 1323
MvaI CCWGG 2 cut(s) 153, 552
MvnI CGCG 4 cut(s) 35, 135, 460, 1145
MwoI GCNNNNNNNGC 5 cut(s) 110, 278, 349, 607, 1457
NciI CCSGG 1 cut(s) 1323
NlaIII CATG 7 cut(s) 535, 601, 713, 812, 916, 1273, 1410
NlaIV GGNNCC 2 cut(s) 90, 672
NmuCI GTSAC 1 cut(s) 1402
NsiI ATGCAT 1 cut(s) 599
NspI RCATGY 2 cut(s) 601, 916
PaeI GCATGC 1 cut(s) 601
PcsI WCGNNNNNNNCGW 2 cut(s) 58, 271
PdmI GAANNNNTTC 2 cut(s) 295, 830
PfeI GAWTC 6 cut(s) 98, 249, 644, 890, 1283, 1474
PflFI GACNNNGTC 1 cut(s) 626
PflMI CCANNNNNTGG 3 cut(s) 372, 1213, 1237
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 6 cut(s) 34, 112, 351, 993, 1428, 1431
PleI GAGTC 3 cut(s) 261, 1312, 1372
PpsI GAGTC 3 cut(s) 261, 1312, 1372
Psp6I CCWGG 2 cut(s) 151, 550
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 2 cut(s) 151, 550
PspN4I GGNNCC 2 cut(s) 90, 672
PspPI GGNCC 2 cut(s) 116, 1343
PstI CTGCAG 2 cut(s) 993, 1342
PstNI CAGNNNCTG 3 cut(s) 961, 1124, 1432
PsuI RGATCY 2 cut(s) 284, 882
PsyI GACNNNGTC 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 1432
RseI CAYNNNNRTG 2 cut(s) 534, 813
SaqAI TTAA 6 cut(s) 362, 390, 470, 636, 843, 1464
SatI GCNGC 6 cut(s) 33, 111, 350, 992, 1427, 1430
Sau96I GGNCC 2 cut(s) 116, 1343
SchI GAGTC 3 cut(s) 261, 1312, 1372
ScrFI CCNGG 3 cut(s) 153, 552, 1323
SduI GDGCHC 2 cut(s) 510, 1007
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 3 cut(s) 584, 710, 805
SfcI CTRYAG 2 cut(s) 989, 1338
SinI GGWCC 2 cut(s) 116, 1343
SmiMI CAYNNNNRTG 2 cut(s) 534, 813
SmlI CTYRAG 2 cut(s) 842, 1463
SmoI CTYRAG 2 cut(s) 842, 1463
SphI GCATGC 1 cut(s) 601
Sse9I AATT 9 cut(s) 651, 796, 873, 923, 928, 966, 1030, 1057, 1439
SsiI CCGC 4 cut(s) 33, 413, 722, 1421
SspMI CTAG 3 cut(s) 29, 180, 1275
StyD4I CCNGG 3 cut(s) 151, 550, 1321
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 3 cut(s) 731, 1010, 1248
TaqI TCGA 6 cut(s) 289, 312, 370, 484, 612, 1331
TasI AATT 9 cut(s) 651, 796, 873, 923, 928, 966, 1030, 1057, 1439
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 6 cut(s) 98, 249, 644, 890, 1283, 1474
Tru1I TTAA 6 cut(s) 362, 390, 470, 636, 843, 1464
Tru9I TTAA 6 cut(s) 362, 390, 470, 636, 843, 1464
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 1 cut(s) 1402
TseI GCWGC 5 cut(s) 110, 349, 991, 1426, 1429
Tsp45I GTSAC 1 cut(s) 1402
TspDTI ATGAA 3 cut(s) 396, 437, 776
TspRI CASTG 1 cut(s) 868
Tth111I GACNNNGTC 1 cut(s) 626
Van91I CCANNNNNTGG 3 cut(s) 372, 1213, 1237
Vha464I CTTAAG 2 cut(s) 842, 1463
VpaK11BI GGWCC 2 cut(s) 116, 1343
XapI RAATTY 4 cut(s) 651, 796, 928, 966
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 2 cut(s) 601, 916
XmiI GTMKAC 1 cut(s) 1114
XmnI GAANNNNTTC 2 cut(s) 295, 830
XspI CTAG 3 cut(s) 29, 180, 1275
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.