FvH4_1g25830

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002893
Physical Location & Seq
Reverse (-)
17739730 .. 17743564
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25830.t1

Sequence Viewer

Length: 1425 bp
ATGGCGGGGTGGGGTGTTCGTCGGCGAGTTGCATACCTTAAAGGAAATAATCCTCCTCAAGTTGCATCCAGCATCTCTAAGGAAGAAGAGGTTGAAGATTCCAAGGATGAAGTTTTAAGAGCTGTGATGGAGGATTCAAAATATGAAGTTTTAAGAGCTGTTAAAAGTGAACCTCTAGAAGATATGCCAGAATCCAAAAGGAGGAAGTGCCCTGGCCGCAGATCTAAAGAAGTACAGGCATCATTGTTTGCTAAGAAAAGACAGCATGTGACCATAGCAGGAAGAGGAAGATGGAATGATGAGAGGTATAAGAGGGCAGAGCAAAGTTTGTTCAATGTTTTGGAGGCTCAAGATGCAACTTTTGCCCACCCAATTTCCAGGACAGATCTGAGATTGGCAGCACGTAGACAAATTGGTGACACTGGGCTGATTGACCACCTACTGAAGCACATTGATGGTACAATTGCACCATGTGGGAGCAAGCGGCTTCGGCGGTGGTTCAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGAAAAGAGGCTGGGTATCATCCTTATTGGTTTCCACAAGGCTGTGGCCCCTCTGAGCATTATAATTCTTCTGGAGAACTGAGGCTACTCAAGGCAGAAGTCGATAAAATGAAAAGTGATATGCAGGAGCTGCTGGTGTCCAAGAAGCAAGAGAACGATCAAAGCAATATGCTGGAGGATTTGGTGAAATGGAAAGCTCAAATTGAGGAAAGCTTGAAACTTAATCTGGGTTCTTGGAAGGGTATACAGGACAAGTTGGGGGAGTTCTTGATATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATGTACAAATGTCATGAGTAATATGCAAGTAGAGAAGCAATACACTGCTACCAACCTTGTAGCTTCTGAGCAATGGGAAGATTGGTTGGATAACAGCAATGTGGATAATTTCCAGGGAAATGAACTTGTAACTTGGTTTGAGAGTACCACTCCGGTTAACACTGAAGAGGAAGTTATAATCCAAGATCACCGCTCCGCCCCACCAGATGGATCAAAGACTGGTGATAGCTCATCTCAGGACCCTATTTTCACAGCCGAAGAAATGGTTGAACTGGAGAGGGAGAGAGATGTGCTGAGGCTGGAATGGGAGAAGCAGACTGAACATCAAGCTAATGTGACTCCGAATTCTTCTGCAAGTTCGAAGTCAGATGTTGATAATGTGCATTTGTTTCAGGAAATGTTTCAGGAGTTGTTTAGCTGGAAGTCTCAGATGGAGCAGAAAGTGATTGAGTTATCGGATTCCGTGAGTGCCCTCAAGCAAACATCAAAACTCTCTACTCCAGCCTTTCAGCTGCCAGAAGACGGGAATCTGAGTATGGACTATTATCCGTTTTACAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

54.54

Weight (kDa)

5.2

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 97 - 179 4.7e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 618, 1037
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 1053
AccI GTMKAC 2 cut(s) 406, 799
AciI CCGC 7 cut(s) 5, 217, 484, 493, 539, 1051, 1056
AclWI GGATC 1 cut(s) 1078
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 1204
AcuI CTGAAG 2 cut(s) 464, 1044
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 4 cut(s) 234, 460, 865, 1006
AfiI CCNNNNNNNGG 3 cut(s) 201, 1067, 1382
AgsI TTSAA 6 cut(s) 95, 138, 334, 502, 772, 1130
AjnI CCWGG 3 cut(s) 211, 377, 972
Alw26I GTCTC 1 cut(s) 1290
AlwI GGATC 1 cut(s) 1078
AlwNI CAGNNNCTG 1 cut(s) 685
AoxI GGCC 2 cut(s) 214, 601
ApeKI GCWGC 3 cut(s) 398, 685, 1372
ApoI RAATTY 1 cut(s) 1204
Asp700I GAANNNNTTC 1 cut(s) 1260
AspS9I GGNCC 2 cut(s) 602, 1099
AsuHPI GGTGA 4 cut(s) 428, 751, 1040, 1094
AsuII TTCGAA 2 cut(s) 556, 1220
AvaII GGWCC 1 cut(s) 1099
BaeGI GKGCMC 2 cut(s) 212, 1333
BbsI GAAGAC 1 cut(s) 1386
BbvCI CCTCAGC 1 cut(s) 1154
BbvI GCAGC 3 cut(s) 410, 672, 1359
BccI CCATC 5 cut(s) 121, 285, 449, 1061, 1285
BciT130I CCWGG 3 cut(s) 213, 379, 974
BcoDI GTCTC 1 cut(s) 1290
BfaI CTAG 2 cut(s) 176, 1423
BglII AGATCT 2 cut(s) 221, 385
BisI GCNGC 5 cut(s) 217, 399, 485, 686, 1373
BlsI GCNGC 5 cut(s) 218, 400, 486, 687, 1374
Bme1390I CCNGG 3 cut(s) 213, 379, 974
Bme18I GGWCC 1 cut(s) 1099
BmgT120I GGNCC 2 cut(s) 602, 1099
BmiI GGNNCC 2 cut(s) 604, 1101
BmrFI CCNGG 3 cut(s) 213, 379, 974
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 4 cut(s) 74, 81, 248, 343
BmuI ACTGGG 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 1386
BplI GAGNNNNNCTC 2 cut(s) 994, 1026
BpmI CTGGAG 4 cut(s) 648, 749, 1154, 1344
Bpu10I CCTNAGC 1 cut(s) 1154
Bpu14I TTCGAA 2 cut(s) 556, 1220
BpuEI CTTGAG 4 cut(s) 42, 333, 629, 1319
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 102, 211, 973
BsaWI WCCGGW 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 1067, 1382
Bse1I ACTGG 4 cut(s) 427, 549, 1084, 1137
Bse3DI GCAATG 2 cut(s) 938, 964
BseBI CCWGG 3 cut(s) 213, 379, 974
BseDI CCNNGG 3 cut(s) 102, 211, 973
BseGI GGATG 3 cut(s) 65, 112, 574
BseLI CCNNNNNNNGG 3 cut(s) 201, 1067, 1382
BseMI GCAATG 2 cut(s) 938, 964
BseMII CTCAG 8 cut(s) 380, 600, 626, 918, 1109, 1145, 1301, 1382
BseNI ACTGG 4 cut(s) 427, 549, 1084, 1137
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 2 cut(s) 212, 1333
BseXI GCAGC 3 cut(s) 410, 672, 1359
BseYI CCCAGC 1 cut(s) 566
BshFI GGCC 2 cut(s) 216, 603
BsiSI CCGG 1 cut(s) 1013
BslI CCNNNNNNNGG 3 cut(s) 201, 1067, 1382
BsmAI GTCTC 1 cut(s) 1290
BsnI GGCC 2 cut(s) 216, 603
Bsp119I TTCGAA 2 cut(s) 556, 1220
Bsp1286I GDGCHC 2 cut(s) 212, 1333
Bsp1407I TGTACA 1 cut(s) 863
Bsp143I GATC 5 cut(s) 221, 385, 712, 1045, 1070
BspACI CCGC 7 cut(s) 5, 217, 484, 493, 539, 1051, 1056
BspANI GGCC 2 cut(s) 216, 603
BspCNI CTCAG 8 cut(s) 381, 601, 627, 919, 1108, 1146, 1300, 1383
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 2 cut(s) 604, 1101
BspPI GGATC 1 cut(s) 1078
BspT104I TTCGAA 2 cut(s) 556, 1220
BsrBI CCGCTC 1 cut(s) 1053
BsrDI GCAATG 2 cut(s) 938, 964
BsrGI TGTACA 1 cut(s) 863
BsrI ACTGG 4 cut(s) 427, 549, 1084, 1137
BssECI CCNNGG 3 cut(s) 102, 211, 973
BssMI GATC 5 cut(s) 221, 385, 712, 1045, 1070
BssNAI GTATAC 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 800
Bst2UI CCWGG 3 cut(s) 213, 379, 974
Bst6I CTCTTC 3 cut(s) 81, 277, 1020
BstAPI GCANNNNNTGC 2 cut(s) 362, 685
BstAUI TGTACA 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 404
BstBI TTCGAA 2 cut(s) 556, 1220
BstC8I GCNNGC 1 cut(s) 482
BstF5I GGATG 3 cut(s) 65, 112, 574
BstKTI GATC 5 cut(s) 224, 388, 715, 1048, 1073
BstMAI GTCTC 1 cut(s) 1290
BstMBI GATC 5 cut(s) 221, 385, 712, 1045, 1070
BstMWI GCNNNNNNNGC 6 cut(s) 216, 353, 362, 490, 545, 685
BstNI CCWGG 3 cut(s) 213, 379, 974
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 211, 377, 972
BstSLI GKGCMC 2 cut(s) 212, 1333
BstV1I GCAGC 3 cut(s) 410, 672, 1359
BstV2I GAAGAC 1 cut(s) 1386
BstX2I RGATCY 2 cut(s) 221, 385
BstYI RGATCY 2 cut(s) 221, 385
BstZ17I GTATAC 1 cut(s) 800
BsuRI GGCC 2 cut(s) 216, 603
BtsCI GGATG 3 cut(s) 65, 112, 574
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 3 cut(s) 420, 903, 1020
Cac8I GCNNGC 1 cut(s) 482
CaiI CAGNNNCTG 1 cut(s) 685
CciI TCATGA 1 cut(s) 873
Cfr13I GGNCC 2 cut(s) 602, 1099
Csp6I GTAC 4 cut(s) 233, 459, 864, 1005
CviAII CATG 3 cut(s) 266, 471, 874
CviQI GTAC 4 cut(s) 233, 459, 864, 1005
DpnI GATC 5 cut(s) 223, 387, 714, 1047, 1072
DpnII GATC 5 cut(s) 221, 385, 712, 1045, 1070
DraIII CACNNNGTG 1 cut(s) 473
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 3 cut(s) 81, 277, 1020
EarI CTCTTC 3 cut(s) 81, 277, 1020
EciI GGCGGA 1 cut(s) 1045
Eco130I CCWWGG 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 1099
Eco57I CTGAAG 2 cut(s) 464, 1044
EcoO109I RGGNCCY 1 cut(s) 1099
EcoRI GAATTC 1 cut(s) 1204
EcoRII CCWGG 3 cut(s) 211, 377, 972
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 269, 474, 877
FatI CATG 3 cut(s) 265, 470, 873
FblI GTMKAC 2 cut(s) 406, 799
Fnu4HI GCNGC 5 cut(s) 217, 399, 485, 686, 1373
FokI GGATG 3 cut(s) 52, 119, 561
Fsp4HI GCNGC 5 cut(s) 217, 399, 485, 686, 1373
FspBI CTAG 2 cut(s) 176, 1423
GluI GCNGC 5 cut(s) 217, 399, 485, 686, 1373
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 4 cut(s) 648, 749, 1154, 1344
HaeIII GGCC 2 cut(s) 216, 603
HapII CCGG 1 cut(s) 1013
Hin1II CATG 3 cut(s) 269, 474, 877
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 2 cut(s) 766, 834
HinfI GANTC 6 cut(s) 98, 134, 191, 1198, 1319, 1387
HpaI GTTAAC 1 cut(s) 1018
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 4 cut(s) 428, 751, 1040, 1094
Hpy166II GTNNAC 4 cut(s) 170, 407, 800, 1018
Hpy188I TCNGA 8 cut(s) 390, 610, 928, 1203, 1228, 1290, 1318, 1392
Hpy188III TCNNGA 8 cut(s) 176, 350, 627, 823, 874, 1097, 1253, 1265
Hpy8I GTNNAC 4 cut(s) 170, 407, 800, 1018
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 787
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 8 cut(s) 32, 65, 356, 467, 679, 886, 1214, 1243
HpyF10VI GCNNNNNNNGC 6 cut(s) 216, 353, 362, 490, 545, 685
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 3 cut(s) 269, 474, 877
KspAI GTTAAC 1 cut(s) 1018
Kzo9I GATC 5 cut(s) 221, 385, 712, 1045, 1070
LmnI GCTCC 4 cut(s) 477, 682, 1058, 1294
Lsp1109I GCAGC 3 cut(s) 410, 672, 1359
LweI GCATC 4 cut(s) 74, 81, 248, 343
MaeI CTAG 2 cut(s) 176, 1423
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 4 cut(s) 268, 416, 988, 1195
MalI GATC 5 cut(s) 223, 387, 714, 1047, 1072
MbiI CCGCTC 1 cut(s) 1053
MboI GATC 5 cut(s) 221, 385, 712, 1045, 1070
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 2 cut(s) 221, 385
MhlI GDGCHC 2 cut(s) 212, 1333
MluCI AATT 7 cut(s) 372, 411, 462, 619, 756, 967, 1204
MlyI GAGTC 1 cut(s) 1192
MmeI TCCRAC 2 cut(s) 510, 927
MroXI GAANNNNTTC 1 cut(s) 1260
MseI TTAA 6 cut(s) 39, 116, 152, 162, 777, 1017
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 853, 1372
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 3 cut(s) 213, 379, 974
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 3 cut(s) 213, 379, 974
MwoI GCNNNNNNNGC 6 cut(s) 216, 353, 362, 490, 545, 685
NdeII GATC 5 cut(s) 221, 385, 712, 1045, 1070
NlaIII CATG 3 cut(s) 269, 474, 877
NlaIV GGNNCC 2 cut(s) 604, 1101
NmuCI GTSAC 3 cut(s) 268, 416, 1195
NspI RCATGY 1 cut(s) 269
NspV TTCGAA 2 cut(s) 556, 1220
PagI TCATGA 1 cut(s) 873
PdmI GAANNNNTTC 1 cut(s) 1260
PfeI GAWTC 5 cut(s) 98, 134, 191, 1319, 1387
PflMI CCANNNNNTGG 1 cut(s) 1067
PfoI TCCNGGA 1 cut(s) 377
PkrI GCNGC 5 cut(s) 218, 400, 486, 687, 1374
PleI GAGTC 1 cut(s) 1192
PpsI GAGTC 1 cut(s) 1192
Ppu21I YACGTR 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 1099
PsiI TTATAA 2 cut(s) 618, 1037
Psp5II RGGWCCY 1 cut(s) 1099
Psp6I CCWGG 3 cut(s) 211, 377, 972
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 3 cut(s) 211, 377, 972
PspN4I GGNNCC 2 cut(s) 604, 1101
PspPI GGNCC 2 cut(s) 602, 1099
PspPPI RGGWCCY 1 cut(s) 1099
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 2 cut(s) 221, 385
PvuII CAGCTG 2 cut(s) 853, 1372
RsaI GTAC 4 cut(s) 234, 460, 865, 1006
RsaNI GTAC 4 cut(s) 233, 459, 864, 1005
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 6 cut(s) 39, 116, 152, 162, 777, 1017
SatI GCNGC 5 cut(s) 217, 399, 485, 686, 1373
Sau3AI GATC 5 cut(s) 221, 385, 712, 1045, 1070
Sau96I GGNCC 2 cut(s) 602, 1099
SchI GAGTC 1 cut(s) 1192
ScrFI CCNGG 3 cut(s) 213, 379, 974
SduI GDGCHC 2 cut(s) 212, 1333
SfaNI GCATC 4 cut(s) 74, 81, 248, 343
SfuI TTCGAA 2 cut(s) 556, 1220
SinI GGWCC 1 cut(s) 1099
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 4 cut(s) 57, 348, 644, 1334
SmoI CTYRAG 4 cut(s) 57, 348, 644, 1334
Sse9I AATT 7 cut(s) 372, 411, 462, 619, 756, 967, 1204
SsiI CCGC 7 cut(s) 5, 217, 484, 493, 539, 1051, 1056
SspI AATATT 1 cut(s) 524
SspMI CTAG 2 cut(s) 176, 1423
StyD4I CCNGG 3 cut(s) 211, 377, 972
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 406
TaqI TCGA 3 cut(s) 556, 657, 1220
TasI AATT 7 cut(s) 372, 411, 462, 619, 756, 967, 1204
TatI WGTACW 2 cut(s) 232, 863
TauI GCSGC 2 cut(s) 219, 487
TfiI GAWTC 5 cut(s) 98, 134, 191, 1319, 1387
Tru1I TTAA 6 cut(s) 39, 116, 152, 162, 777, 1017
Tru9I TTAA 6 cut(s) 39, 116, 152, 162, 777, 1017
TscAI CASTG 3 cut(s) 427, 910, 1027
TseFI GTSAC 3 cut(s) 268, 416, 1195
TseI GCWGC 3 cut(s) 398, 685, 1372
Tsp45I GTSAC 3 cut(s) 268, 416, 1195
TspDTI ATGAA 4 cut(s) 123, 159, 680, 996
TspGWI ACGGA 2 cut(s) 1312, 1398
TspRI CASTG 3 cut(s) 427, 910, 1027
Van91I CCANNNNNTGG 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 1099
XapI RAATTY 1 cut(s) 1204
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 2 cut(s) 406, 799
XmnI GAANNNNTTC 1 cut(s) 1260
XspI CTAG 2 cut(s) 176, 1423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.