Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0002893

Physical Location & Seq

Genomic Coordinates Reverse (-)

938291 .. 939794

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g01260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGTACTGGTTGGAGAGTGCTGACCTGGCCAACATTCGGCGGGAGGCTAGGGTGCATGATCCTTACTGGATTCCATCATCGACGTCGATGCCAGGTGGTGGCCCCTTGGACGATTCTGTTTCTGGTGGAGAACTGAAGCTACTCAAGGCAGAAGTAGATAAAATGAAGAGTGATATCCAGGAGCTGCTTTTATCCCAGAAGCAAGAAAATGACCAAGCCAATCAAGAGAGGCTCGAGGATTTGGCAAAATGGAAAGCTCAGTCTGAGCAAAGCTTGAAAGTGATTTTAGGTTCTTGGAAGGGTATGCAGGACAATTTTGAGGAATTAAAGAAATGGAAAACTAAAGTCGAGCGACAGGTGGTGGAAACAACAAATATTTTGAGTGATATGCAAGGACCAAAGCAAAACACTGTCTCCAAGCCTGAAGAACCTGAGCAATGGGAAGATTGGCTAGAGAGCAGCAACCTTGACAGTTTTCAGGGAAATGAACTTGTGCCATGGTTTGAGAGCACCAACAATCTTGTTAATTCTGAGGAAGAAGTTATAATTCAAGATCCCTATTTAGCCCTACCGCTTAGTTCAAAGCATGGTGATAGCTCATCCGAGGACCTATTTTGCAAACTCAAGGAAGAAATGGCCGAAATGGAGAGAGATGTGCGCGAGCTGGTACCGGAGAAGCAAAGGGAATATCAAGCTAATTTGACCCCTGATTCTTCTGCTACTGCAAATTCAAAGTCGGATCTTGACAATCTGGTTGTGTTTCAGGAAATGTTTCAGGAGCTGTTTAATTGGAAGTCTACAACAGAGCAGAAGCTGAGTGAGATATCAAATTCCATGAATGTCATGAAGCAGAATCCAAATCTATTGACTCCACCAGCCCCTCAGCTACCAGAAGATGGAAATCACTGTATGGAATATCATCCTTGTTTCATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.98

Weight (kDa)

4.5

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23610 AT5G23610
fragaria_vesca	FvH4_1g25830
malus_domestica	MD00G1096200.v1.1 MD15G1140600.v1.1
prunus_persica	Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1
pyrus_communis	pycom15g12710 pycom520g01260
rosa_chinensis	RchiOBHm_Chr3g0484951
rosa_laevigata	RLG00000023182
rosa_multiflora	Rmu_co8424235.1_g000001 Rmu_sc0002724.1_g000038
rosa_roxburghii	Rroxscaffold_6G00397310
rosa_rugosa	Rorug03G0214600
rosa_samantha	Rh3AG265100 Rh3BG300600 Rh3CG298400 Rh3DG294300
rosa_wichuraiana	Rw3G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AatII	GACGTC	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	2 cut(s)	101, 899
AccI	GTMKAC	1 cut(s)	800
AccII	CGCG	1 cut(s)	663
AciI	CCGC	2 cut(s)	43, 575
AclWI	GGATC	3 cut(s)	56, 551, 750
AcoI	YGGCCR	2 cut(s)	30, 639
AcsI	RAATTY	2 cut(s)	730, 832
AcuI	CTGAAG	2 cut(s)	158, 447
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	2 cut(s)	8, 672
AfiI	CCNNNNNNNGG	3 cut(s)	39, 101, 899
AgsI	TTSAA	4 cut(s)	280, 554, 585, 735
AjnI	CCWGG	3 cut(s)	27, 94, 180
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	3 cut(s)	56, 551, 750
AlwNI	CAGNNNCTG	3 cut(s)	187, 784, 817
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	30, 103, 639
ApeKI	GCWGC	2 cut(s)	187, 462
ApoI	RAATTY	2 cut(s)	730, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	722, 754
Asp700I	GAANNNNTTC	1 cut(s)	774
Asp718I	GGTACC	1 cut(s)	670
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	3 cut(s)	104, 398, 610
AsuHPI	GGTGA	1 cut(s)	605
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	398, 610
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	174, 474
BccI	CCATC	2 cut(s)	85, 893
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	3 cut(s)	29, 96, 182
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	2 cut(s)	51, 455
BisI	GCNGC	2 cut(s)	188, 463
BlsI	GCNGC	2 cut(s)	189, 464
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	29, 96, 182
Bme18I	GGWCC	2 cut(s)	398, 610
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	104, 398, 610
BmiI	GGNNCC	2 cut(s)	106, 672
BmrFI	CCNGG	3 cut(s)	29, 96, 182
BmsI	GCATC	1 cut(s)	81
Bpu10I	CCTNAGC	2 cut(s)	435, 885
BpuEI	CTTGAG	2 cut(s)	131, 611
BsaBI	GATNNNNATC	1 cut(s)	903
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	108, 500, 606
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 401, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 101, 899
Bse1I	ACTGG	2 cut(s)	14, 74
Bse3DI	GCAATG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	903
BseBI	CCWGG	3 cut(s)	29, 96, 182
BseDI	CCNNGG	3 cut(s)	108, 500, 606
BseGI	GGATG	2 cut(s)	602, 922
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	3 cut(s)	39, 101, 899
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	6 cut(s)	258, 275, 426, 525, 809, 899
BseNI	ACTGG	2 cut(s)	14, 74
BseXI	GCAGC	2 cut(s)	174, 474
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	3 cut(s)	32, 105, 641
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	39, 101, 899
BsmAI	GTCTC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	32, 105, 641
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	61, 556, 742
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	2 cut(s)	43, 575
BspANI	GGCC	3 cut(s)	32, 105, 641
BspCNI	CTCAG	6 cut(s)	259, 274, 427, 526, 810, 898
BspFNI	CGCG	1 cut(s)	663
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	2 cut(s)	106, 672
BspPI	GGATC	3 cut(s)	56, 551, 750
BspT107I	GGYRCC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	14, 74
BssECI	CCNNGG	3 cut(s)	108, 500, 606
BssMI	GATC	3 cut(s)	61, 556, 742
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	108, 500
Bst2UI	CCWGG	3 cut(s)	29, 96, 182
Bst4CI	ACNGT	3 cut(s)	415, 476, 911
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	7 cut(s)	261, 267, 435, 534, 578, 818, 885
BstDSI	CCRYGG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	602, 922
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	3 cut(s)	64, 559, 745
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	61, 556, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	3 cut(s)	29, 96, 182
BstSCI	CCNGG	3 cut(s)	27, 94, 180
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	174, 474
BstX2I	RGATCY	2 cut(s)	556, 742
BstYI	RGATCY	2 cut(s)	556, 742
BsuRI	GGCC	3 cut(s)	32, 105, 641
BtgI	CCRYGG	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	602, 922
BtsIMutI	CAGTG	2 cut(s)	411, 907
Cac8I	GCNNGC	1 cut(s)	665
CaiI	CAGNNNCTG	3 cut(s)	187, 784, 817
CciI	TCATGA	1 cut(s)	846
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	3 cut(s)	104, 398, 610
Csp6I	GTAC	2 cut(s)	7, 671
CviAII	CATG	6 cut(s)	59, 501, 590, 838, 847, 934
CviQI	GTAC	2 cut(s)	7, 671
DdeI	CTNAG	7 cut(s)	261, 267, 435, 534, 578, 818, 885
DpnI	GATC	3 cut(s)	63, 558, 744
DpnII	GATC	3 cut(s)	61, 556, 742
EaeI	YGGCCR	2 cut(s)	30, 639
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	108, 500
Eco32I	GATATC	2 cut(s)	178, 828
Eco47I	GGWCC	2 cut(s)	398, 610
Eco57I	CTGAAG	2 cut(s)	158, 447
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	3 cut(s)	27, 94, 180
EcoRV	GATATC	2 cut(s)	178, 828
EcoT14I	CCWWGG	2 cut(s)	108, 500
ErhI	CCWWGG	2 cut(s)	108, 500
FaeI	CATG	6 cut(s)	62, 504, 593, 841, 850, 937
FatI	CATG	6 cut(s)	58, 500, 589, 837, 846, 933
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	2 cut(s)	188, 463
FokI	GGATG	2 cut(s)	589, 909
Fsp4HI	GCNGC	2 cut(s)	188, 463
FspBI	CTAG	2 cut(s)	51, 455
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	2 cut(s)	188, 463
HaeIII	GGCC	3 cut(s)	32, 105, 641
HapII	CCGG	1 cut(s)	674
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	6 cut(s)	62, 504, 593, 841, 850, 937
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	5 cut(s)	73, 116, 713, 856, 871
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	1 cut(s)	801
Hpy188I	TCNGA	4 cut(s)	268, 535, 607, 742
Hpy188III	TCNNGA	6 cut(s)	227, 554, 746, 767, 779, 847
Hpy8I	GTNNAC	1 cut(s)	801
Hpy99I	CGWCG	2 cut(s)	88, 91
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	415, 476, 911
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	58, 310, 394, 621, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	7 cut(s)	261, 267, 435, 534, 578, 818, 885
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	6 cut(s)	62, 504, 593, 841, 850, 937
HspAI	GCGC	1 cut(s)	661
KpnI	GGTACC	1 cut(s)	674
Kzo9I	GATC	3 cut(s)	61, 556, 742
LmnI	GCTCC	2 cut(s)	184, 781
Lsp1109I	GCAGC	2 cut(s)	174, 474
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	51, 455
MaeII	ACGT	1 cut(s)	86
MalI	GATC	3 cut(s)	63, 558, 744
MboI	GATC	3 cut(s)	61, 556, 742
MboII	GAAGA	7 cut(s)	181, 440, 458, 551, 644, 708, 908
MflI	RGATCY	2 cut(s)	556, 742
MhlI	GDGCHC	1 cut(s)	515
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	8 cut(s)	316, 326, 529, 549, 700, 730, 790, 832
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	7 cut(s)	40, 225, 232, 316, 529, 601, 894
Mox20I	TGGCCA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	774
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	329, 528, 789
Msp20I	TGGCCA	1 cut(s)	32
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	3 cut(s)	29, 96, 182
MvaI	CCWGG	3 cut(s)	29, 96, 182
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	500
NdeII	GATC	3 cut(s)	61, 556, 742
NlaIII	CATG	6 cut(s)	62, 504, 593, 841, 850, 937
NlaIV	GGNNCC	2 cut(s)	106, 672
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	4 cut(s)	73, 116, 713, 856
PflMI	CCANNNNNTGG	2 cut(s)	101, 899
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	189, 464
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
PpuMI	RGGWCCY	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	3 cut(s)	27, 94, 180
PspGI	CCWGG	3 cut(s)	27, 94, 180
PspN4I	GGNNCC	2 cut(s)	106, 672
PspPI	GGNCC	3 cut(s)	104, 398, 610
PspPPI	RGGWCCY	1 cut(s)	610
PspXI	VCTCGAGB	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PstNI	CAGNNNCTG	3 cut(s)	187, 784, 817
PsuI	RGATCY	2 cut(s)	556, 742
RsaI	GTAC	2 cut(s)	8, 672
RsaNI	GTAC	2 cut(s)	7, 671
SaqAI	TTAA	3 cut(s)	329, 528, 789
SatI	GCNGC	2 cut(s)	188, 463
Sau3AI	GATC	3 cut(s)	61, 556, 742
Sau96I	GGNCC	3 cut(s)	104, 398, 610
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	3 cut(s)	29, 96, 182
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	2 cut(s)	398, 610
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	3 cut(s)	146, 236, 626
SmoI	CTYRAG	3 cut(s)	146, 236, 626
Sse9I	AATT	8 cut(s)	316, 326, 529, 549, 700, 730, 790, 832
SsiI	CCGC	2 cut(s)	43, 575
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	51, 455
StyD4I	CCNGG	3 cut(s)	27, 94, 180
StyI	CCWWGG	2 cut(s)	108, 500
TaaI	ACNGT	3 cut(s)	415, 476, 911
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	4 cut(s)	83, 89, 237, 351
TasI	AATT	8 cut(s)	316, 326, 529, 549, 700, 730, 790, 832
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	4 cut(s)	73, 116, 713, 856
Tru1I	TTAA	3 cut(s)	329, 528, 789
Tru9I	TTAA	3 cut(s)	329, 528, 789
TscAI	CASTG	2 cut(s)	418, 914
TseI	GCWGC	2 cut(s)	187, 462
TspDTI	ATGAA	5 cut(s)	182, 504, 854, 863, 922
TspRI	CASTG	2 cut(s)	418, 914
Van91I	CCANNNNNTGG	2 cut(s)	101, 899
VpaK11BI	GGWCC	2 cut(s)	398, 610
XapI	RAATTY	2 cut(s)	730, 832
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	2 cut(s)	51, 455
ZraI	GACGTC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.