Rw3G023680

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002893
Physical Location & Seq
Reverse (-)
29753364 .. 29757378
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023680.1

Sequence Viewer

Length: 1185 bp
ATGTTGCGTTTGGTAACGTTGTCGATACTCAAAGGTCGATGGGGTGTTCGTCGGAGAGTTGTGTTCCTTAAAGAAAATAATCCTCAAGTTGCAGCCAGCATCACTAAGGAAGAAGAGGTAGAAGATTCCAAAGATGAAGTTGTAAGAGCTGTGGTAGAGGATTCAAAAGATGAAGTTTTAAGAGCTGTGAAAACTGAACCTCTAGAGATGCCAGAACCCAAAAGGAGGAAGTGCCTTGACCGCAGATCTAAAGATGTGCAGGCAGCATTGCGTGCTAAGAAAAGGCAGCATGGGTTTAGGCCAATGGAGAGAAATGAGATCATAGGAGGAAGATGGAATGTTGAGAGGTATAAGAAAGCAGAGCAAAGTCTGTTGGATGTTTTGGAGGCTAAAGAGGCAACTTTTGCCAACCCAGTTAGCAGGACAGATCTGAGATTGACAGCTCGAGGAAAAATTGGTGACACTGGACTGATTGACCACCTACTGAAGCACATTGATGGCACAGTTGCACCATGTGGGAGCAAGCGGTTTCGGCGGTGGTTCAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGGAAAGAGGCTGGGCATCATCCTTATTGGTTTCCACCAGGTTGTGGTGCCTCTGAGCATTATGATTCTTCTGGAGAACTGAGGCTACTCAAGGCAGAAGTGGATAAAATGAAAAGTGATATGCAGGAGCTGCTGGTATCCAAGAAGCAAGAGAAAGATCAAACCAATATGCTGGAGGATTTGGTGCAATGGAAAGCTCAAACTGAGGAAAGGTTGAAACTTGCTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTGGGTGAGTTCGTGACATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATTTACAAATGTCATGAGTGATATGCAAGTAGAAAAGCAATACACTGCTACCAACCTTTTAGCTTCTGAGCGATGGGAAGATTGGTTGGAGAGCGGCAATGTGGATAATTTCCAGGGAAATGAACTTGTACCTTGGTTTGAGAATACCACTCCAGTGAACAATGAAGAGGAAGTTATAATCCAAGATCCCCAGTCAGCCCCACCAGATGGATCAAAGACTGGTGATAGCTCAACACAGGACCCTATTTTCACAGCGAAGGAAATGGTTGAATTGGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

45.29

Weight (kDa)

5.56

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 111 - 193 3.1e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1079
AccB1I GGYRCC 1 cut(s) 644
AccB7I CCANNNNNTGG 2 cut(s) 641, 1109
AccBSI CCGCTC 1 cut(s) 996
AciI CCGC 5 cut(s) 241, 526, 535, 581, 996
AclI AACGTT 1 cut(s) 17
AclWI GGATC 2 cut(s) 1082, 1120
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 1 cut(s) 1032
AfiI CCNNNNNNNGG 3 cut(s) 225, 641, 1109
AgsI TTSAA 4 cut(s) 165, 544, 814, 1172
AjnI CCWGG 2 cut(s) 634, 1014
AleI CACNNNNGTG 1 cut(s) 1055
AluBI AGCT 9 cut(s) 149, 185, 443, 727, 794, 878, 895, 965, 1131
AluI AGCT 9 cut(s) 149, 185, 443, 727, 794, 878, 895, 965, 1131
AlwI GGATC 2 cut(s) 1082, 1120
AlwNI CAGNNNCTG 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 4 cut(s) 92, 263, 286, 727
ApoI RAATTY 1 cut(s) 902
AspS9I GGNCC 1 cut(s) 1141
AsuHPI GGTGA 3 cut(s) 470, 869, 1136
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 644
BbvI GCAGC 4 cut(s) 104, 275, 298, 714
BccI CCATC 5 cut(s) 33, 327, 491, 969, 1103
BciT130I CCWGG 2 cut(s) 636, 1016
BciVI GTATCC 1 cut(s) 745
BfaI CTAG 1 cut(s) 203
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 2 cut(s) 245, 427
BisI GCNGC 5 cut(s) 93, 264, 287, 728, 997
BlsI GCNGC 5 cut(s) 94, 265, 288, 729, 998
Bme1390I CCNGG 2 cut(s) 636, 1016
Bme18I GGWCC 1 cut(s) 1141
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 1141
BmiI GGNNCC 2 cut(s) 646, 1143
BmrFI CCNGG 2 cut(s) 636, 1016
BmrI ACTGGG 2 cut(s) 407, 1087
BmsI GCATC 3 cut(s) 108, 198, 622
BmuI ACTGGG 2 cut(s) 407, 1087
BpmI CTGGAG 3 cut(s) 690, 791, 1038
BpuEI CTTGAG 2 cut(s) 69, 671
BsaJI CCNNGG 2 cut(s) 1015, 1034
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 641, 1109
Bse1I ACTGG 6 cut(s) 413, 469, 591, 1055, 1093, 1126
Bse3DI GCAATG 3 cut(s) 266, 791, 1006
BseBI CCWGG 2 cut(s) 636, 1016
BseDI CCNNGG 2 cut(s) 1015, 1034
BseGI GGATG 2 cut(s) 382, 616
BseLI CCNNNNNNNGG 3 cut(s) 225, 641, 1109
BseMI GCAATG 3 cut(s) 266, 791, 1006
BseMII CTCAG 5 cut(s) 422, 642, 668, 792, 960
BseNI ACTGG 6 cut(s) 413, 469, 591, 1055, 1093, 1126
BseXI GCAGC 4 cut(s) 104, 275, 298, 714
BseYI CCCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 225, 641, 1109
BsnI GGCC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 444
Bsp143I GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
BspACI CCGC 5 cut(s) 241, 526, 535, 581, 996
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 5 cut(s) 423, 643, 669, 793, 961
BspHI TCATGA 1 cut(s) 915
BspLI GGNNCC 2 cut(s) 646, 1143
BspPI GGATC 2 cut(s) 1082, 1120
BspT107I GGYRCC 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 996
BsrDI GCAATG 3 cut(s) 266, 791, 1006
BsrI ACTGG 6 cut(s) 413, 469, 591, 1055, 1093, 1126
BssECI CCNNGG 2 cut(s) 1015, 1034
BssMI GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
BssT1I CCWWGG 1 cut(s) 1034
Bst2UI CCWGG 2 cut(s) 636, 1016
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 2 cut(s) 108, 1062
BstAPI GCANNNNNTGC 3 cut(s) 272, 404, 727
BstC8I GCNNGC 4 cut(s) 97, 261, 273, 524
BstDEI CTNAG 7 cut(s) 105, 276, 431, 651, 677, 801, 969
BstF5I GGATG 2 cut(s) 382, 616
BstKTI GATC 6 cut(s) 248, 321, 430, 757, 1090, 1115
BstMBI GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
BstMWI GCNNNNNNNGC 7 cut(s) 240, 272, 395, 404, 532, 587, 727
BstNI CCWGG 2 cut(s) 636, 1016
BstSCI CCNGG 2 cut(s) 634, 1014
BstV1I GCAGC 4 cut(s) 104, 275, 298, 714
BstX2I RGATCY 3 cut(s) 245, 427, 1087
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 3 cut(s) 245, 427, 1087
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 988
BtsCI GGATG 2 cut(s) 382, 616
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 3 cut(s) 462, 945, 1062
Cac8I GCNNGC 4 cut(s) 97, 261, 273, 524
CaiI CAGNNNCTG 1 cut(s) 727
CciI TCATGA 1 cut(s) 915
Cfr13I GGNCC 1 cut(s) 1141
CsiI ACCWGGT 1 cut(s) 634
Csp6I GTAC 1 cut(s) 1031
CviAII CATG 4 cut(s) 290, 513, 870, 916
CviQI GTAC 1 cut(s) 1031
DdeI CTNAG 7 cut(s) 105, 276, 431, 651, 677, 801, 969
DpnI GATC 6 cut(s) 247, 320, 429, 756, 1089, 1114
DpnII GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
DraIII CACNNNGTG 1 cut(s) 515
Eam1104I CTCTTC 2 cut(s) 108, 1062
EarI CTCTTC 2 cut(s) 108, 1062
Eco130I CCWWGG 1 cut(s) 1034
Eco47I GGWCC 1 cut(s) 1141
Eco57I CTGAAG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 1141
EcoRII CCWGG 2 cut(s) 634, 1014
EcoT14I CCWWGG 1 cut(s) 1034
ErhI CCWWGG 1 cut(s) 1034
FaeI CATG 4 cut(s) 293, 516, 873, 919
FatI CATG 4 cut(s) 289, 512, 869, 915
Fnu4HI GCNGC 5 cut(s) 93, 264, 287, 728, 997
FokI GGATG 2 cut(s) 389, 603
Fsp4HI GCNGC 5 cut(s) 93, 264, 287, 728, 997
FspBI CTAG 1 cut(s) 203
GluI GCNGC 5 cut(s) 93, 264, 287, 728, 997
GsaI CCCAGC 1 cut(s) 612
GsuI CTGGAG 3 cut(s) 690, 791, 1038
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 4 cut(s) 293, 516, 873, 919
HindIII AAGCTT 1 cut(s) 876
HinfI GANTC 3 cut(s) 125, 161, 662
HphI GGTGA 3 cut(s) 470, 869, 1136
Hpy166II GTNNAC 1 cut(s) 1060
Hpy188I TCNGA 5 cut(s) 54, 432, 600, 652, 970
Hpy188III TCNNGA 4 cut(s) 203, 669, 865, 916
Hpy8I GTNNAC 1 cut(s) 1060
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 829, 1153
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 7 cut(s) 92, 259, 509, 721, 784, 844, 928
HpyF10VI GCNNNNNNNGC 7 cut(s) 240, 272, 395, 404, 532, 587, 727
HpyF3I CTNAG 7 cut(s) 105, 276, 431, 651, 677, 801, 969
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 4 cut(s) 293, 516, 873, 919
Kzo9I GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
LmnI GCTCC 2 cut(s) 519, 724
Lsp1109I GCAGC 4 cut(s) 104, 275, 298, 714
LweI GCATC 3 cut(s) 108, 198, 622
MabI ACCWGGT 1 cut(s) 634
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 13, 458, 865
MalI GATC 6 cut(s) 247, 320, 429, 756, 1089, 1114
MbiI CCGCTC 1 cut(s) 996
MboI GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
MboII GAAGA 7 cut(s) 122, 125, 134, 342, 657, 992, 1079
MflI RGATCY 3 cut(s) 245, 427, 1087
MluCI AATT 4 cut(s) 453, 902, 1009, 1172
MmeI TCCRAC 4 cut(s) 32, 354, 552, 969
MseI TTAA 2 cut(s) 69, 179
MslI CAYNNNNRTG 2 cut(s) 495, 1055
MspA1I CMGCKG 1 cut(s) 895
MspR9I CCNGG 2 cut(s) 636, 1016
MvaI CCWGG 2 cut(s) 636, 1016
MwoI GCNNNNNNNGC 7 cut(s) 240, 272, 395, 404, 532, 587, 727
NdeII GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
NlaIII CATG 4 cut(s) 293, 516, 873, 919
NlaIV GGNNCC 2 cut(s) 646, 1143
NmuCI GTSAC 2 cut(s) 458, 865
OliI CACNNNNGTG 1 cut(s) 1055
PaeR7I CTCGAG 1 cut(s) 444
PagI TCATGA 1 cut(s) 915
PfeI GAWTC 3 cut(s) 125, 161, 662
PflMI CCANNNNNTGG 2 cut(s) 641, 1109
PkrI GCNGC 5 cut(s) 94, 265, 288, 729, 998
PpuMI RGGWCCY 1 cut(s) 1141
PsiI TTATAA 1 cut(s) 1079
Psp1406I AACGTT 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 1141
Psp6I CCWGG 2 cut(s) 634, 1014
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 634, 1014
PspN4I GGNNCC 2 cut(s) 646, 1143
PspPI GGNCC 1 cut(s) 1141
PspPPI RGGWCCY 1 cut(s) 1141
PspXI VCTCGAGB 1 cut(s) 444
PsrI GAACNNNNNNTAC 2 cut(s) 666, 698
PstNI CAGNNNCTG 1 cut(s) 727
PsuI RGATCY 3 cut(s) 245, 427, 1087
PvuII CAGCTG 1 cut(s) 895
RsaI GTAC 1 cut(s) 1032
RsaNI GTAC 1 cut(s) 1031
RseI CAYNNNNRTG 2 cut(s) 495, 1055
SaqAI TTAA 2 cut(s) 69, 179
SatI GCNGC 5 cut(s) 93, 264, 287, 728, 997
Sau3AI GATC 6 cut(s) 245, 318, 427, 754, 1087, 1112
Sau96I GGNCC 1 cut(s) 1141
ScrFI CCNGG 2 cut(s) 636, 1016
SexAI ACCWGGT 1 cut(s) 634
SfaNI GCATC 3 cut(s) 108, 198, 622
Sfr274I CTCGAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 1141
SlaI CTCGAG 1 cut(s) 444
SmiMI CAYNNNNRTG 2 cut(s) 495, 1055
SmlI CTYRAG 3 cut(s) 84, 444, 686
SmoI CTYRAG 3 cut(s) 84, 444, 686
Sse9I AATT 4 cut(s) 453, 902, 1009, 1172
SsiI CCGC 5 cut(s) 241, 526, 535, 581, 996
SspI AATATT 1 cut(s) 566
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 634, 1014
StyI CCWWGG 1 cut(s) 1034
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 23, 37, 445
TasI AATT 4 cut(s) 453, 902, 1009, 1172
TauI GCSGC 1 cut(s) 999
TfiI GAWTC 3 cut(s) 125, 161, 662
Tru1I TTAA 2 cut(s) 69, 179
Tru9I TTAA 2 cut(s) 69, 179
TscAI CASTG 3 cut(s) 469, 952, 1062
TseFI GTSAC 2 cut(s) 458, 865
TseI GCWGC 4 cut(s) 92, 263, 286, 727
Tsp45I GTSAC 2 cut(s) 458, 865
TspDTI ATGAA 5 cut(s) 150, 186, 722, 1038, 1080
TspRI CASTG 3 cut(s) 469, 952, 1062
Van91I CCANNNNNTGG 2 cut(s) 641, 1109
VpaK11BI GGWCC 1 cut(s) 1141
XapI RAATTY 1 cut(s) 902
XbaI TCTAGA 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 444
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.