Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424235.1

Orthogroup ID

OG0002893

Physical Location & Seq

Genomic Coordinates Reverse (-)

58 .. 839

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcacagtggggtgttcgtcggagagttgtgttccttaaagaaaataatcctcaagttgcatccagcatcactaaggaagaaaaggtagaagattccaaagatgaagttgtaagagctgtggtagaggattcaaaagacgaagttttaagagctgtgaaaactgaacctctagagatgccagaacccaaaaggaggaagtgccttgaccgcagatctaaagatgtgcaggcagcattgcgtgctaagaaaaggcaacatgggtttaggccaatggagagaaatgagatcataggaggaagatggaatgttgagaggtataagaaagcagagcaaagtctgttggatgttttggaggctaaagaggcaacttttgccaacccagttagcaggacagatctgagattgacagctcgaggaaaaattggtgacactggactgattgaccacctactgaagcacattgatggcacagttacaccatgtgggagcaagcggtttcggcggtggttcaaccacaatggaataatggaatattggttggagagtgcggaactggctgacattcggaaagaggctgggcatcatccttattggtttccaccaggttgtggtgcctctgagcattatgattcttctggagaactgaggctactcaaggcagaagtggataaaatgaaaaggtggatatatacttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.98

Weight (kDa)

9.36

Isoelectric Point (pI)

62.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23610 AT5G23610
fragaria_vesca	FvH4_1g25830
malus_domestica	MD00G1096200.v1.1 MD15G1140600.v1.1
prunus_persica	Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1
pyrus_communis	pycom15g12710 pycom520g01260
rosa_chinensis	RchiOBHm_Chr3g0484951
rosa_laevigata	RLG00000023182
rosa_multiflora	Rmu_co8424235.1_g000001 Rmu_sc0002724.1_g000038
rosa_roxburghii	Rroxscaffold_6G00397310
rosa_rugosa	Rorug03G0214600
rosa_samantha	Rh3AG265100 Rh3BG300600 Rh3CG298400 Rh3DG294300
rosa_wichuraiana	Rw3G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	611
AciI	CCGC	4 cut(s)	211, 496, 505, 551
AcuI	CTGAAG	1 cut(s)	476
AdeI	CACNNNGTG	1 cut(s)	485
AfiI	CCNNNNNNNGG	2 cut(s)	195, 611
AgsI	TTSAA	2 cut(s)	135, 514
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	3 cut(s)	119, 155, 413
AluI	AGCT	3 cut(s)	119, 155, 413
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	297, 461
BciT130I	CCWGG	1 cut(s)	606
BfaI	CTAG	1 cut(s)	173
BglII	AGATCT	2 cut(s)	215, 397
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	4 cut(s)	71, 78, 168, 592
BmuI	ACTGGG	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	660
BpuEI	CTTGAG	2 cut(s)	39, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 611
Bse1I	ACTGG	3 cut(s)	383, 439, 561
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	606
BseGI	GGATG	3 cut(s)	62, 352, 586
BseLI	CCNNNNNNNGG	2 cut(s)	195, 611
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	392, 612, 638
BseNI	ACTGG	3 cut(s)	383, 439, 561
BseXI	GCAGC	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	195, 611
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	215, 288, 397
BspACI	CCGC	4 cut(s)	211, 496, 505, 551
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	3 cut(s)	393, 613, 639
BspLI	GGNNCC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	383, 439, 561
BssMI	GATC	3 cut(s)	215, 288, 397
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	9, 475
BstAPI	GCANNNNNTGC	2 cut(s)	242, 374
BstC8I	GCNNGC	3 cut(s)	231, 243, 494
BstDEI	CTNAG	5 cut(s)	75, 246, 401, 621, 647
BstF5I	GGATG	3 cut(s)	62, 352, 586
BstKTI	GATC	3 cut(s)	218, 291, 400
BstMBI	GATC	3 cut(s)	215, 288, 397
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 242, 365, 374, 502, 557
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	215, 397
BstYI	RGATCY	2 cut(s)	215, 397
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	62, 352, 586
BtsIMutI	CAGTG	2 cut(s)	14, 432
Cac8I	GCNNGC	3 cut(s)	231, 243, 494
CsiI	ACCWGGT	1 cut(s)	604
CviAII	CATG	2 cut(s)	260, 483
CviJI	RGCY	8 cut(s)	119, 155, 271, 359, 413, 560, 578, 652
CviKI_1	RGCY	8 cut(s)	119, 155, 271, 359, 413, 560, 578, 652
DdeI	CTNAG	5 cut(s)	75, 246, 401, 621, 647
DpnI	GATC	3 cut(s)	217, 290, 399
DpnII	GATC	3 cut(s)	215, 288, 397
DraIII	CACNNNGTG	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	604
FaeI	CATG	2 cut(s)	263, 486
FaiI	YATR	8 cut(s)	261, 293, 321, 484, 630, 691, 693, 700
FatI	CATG	2 cut(s)	259, 482
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	3 cut(s)	49, 359, 573
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	271
Hin1II	CATG	2 cut(s)	263, 486
HinfI	GANTC	3 cut(s)	95, 131, 632
HphI	GGTGA	1 cut(s)	440
Hpy188I	TCNGA	4 cut(s)	24, 402, 570, 622
Hpy188III	TCNNGA	2 cut(s)	173, 639
Hpy99I	CGWCG	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	9, 475
HpyCH4V	TGCA	2 cut(s)	62, 229
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 242, 365, 374, 502, 557
HpyF3I	CTNAG	5 cut(s)	75, 246, 401, 621, 647
Hsp92II	CATG	2 cut(s)	263, 486
Kzo9I	GATC	3 cut(s)	215, 288, 397
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	4 cut(s)	71, 78, 168, 592
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	428, 475
MalI	GATC	3 cut(s)	217, 290, 399
MboI	GATC	3 cut(s)	215, 288, 397
MboII	GAAGA	4 cut(s)	92, 104, 312, 627
MflI	RGATCY	2 cut(s)	215, 397
MluCI	AATT	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	324, 522
MseI	TTAA	2 cut(s)	39, 149
MslI	CAYNNNNRTG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	6 cut(s)	210, 242, 365, 374, 502, 557
NdeII	GATC	3 cut(s)	215, 288, 397
NlaIII	CATG	2 cut(s)	263, 486
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	95, 131, 632
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	616
PspXI	VCTCGAGB	1 cut(s)	414
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PsuI	RGATCY	2 cut(s)	215, 397
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	39, 149
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	215, 288, 397
ScrFI	CCNGG	1 cut(s)	606
SetI	ASST	9 cut(s)	90, 121, 157, 172, 320, 415, 453, 610, 686
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	4 cut(s)	71, 78, 168, 592
Sfr274I	CTCGAG	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	3 cut(s)	54, 414, 656
SmoI	CTYRAG	3 cut(s)	54, 414, 656
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	4 cut(s)	211, 496, 505, 551
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	604
TaaI	ACNGT	2 cut(s)	9, 475
TaqI	TCGA	1 cut(s)	415
TasI	AATT	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	95, 131, 632
Tru1I	TTAA	2 cut(s)	39, 149
Tru9I	TTAA	2 cut(s)	39, 149
TscAI	CASTG	2 cut(s)	14, 439
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	120, 687, 692
TspRI	CASTG	2 cut(s)	14, 439
Van91I	CCANNNNNTGG	1 cut(s)	611
XbaI	TCTAGA	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	414
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.