RchiOBHm_Chr3g0484951

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002893
Physical Location & Seq
Reverse (-)
31489270 .. 31494468
5199 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44963

Sequence Viewer

Length: 1443 bp
ATGGCACAGTGGGGTGTTCGTCGGAGAGTAGTGTTCCTTAAAGAACATAATCCTCAAGTTGCATCCAGCATCACTAAGGAAGAAGAGGTAGAAGATTCCAAAGATGAAGTTTTAAGAGCTGTGGTAGAGGATTCAAAAGATGAAGTTTTAAGAGCTGTGAAAACTGAACCTCTAGAGATGCCAGAACCCAAAAGGAGGAAGTGCCTTGACCGCAGATCTAAAGATGTGCAGGCAGCATTGCGTGCTAAGAAAAGGCAGCATGGGTTTAGGCCAATGGAGAGAAATGAGATCAGAGGAGGAAGATGGAATGTTGAGAGGTATAAGAAAGCAGAGCAAAGTCTGTTGGATGTTTTGGAGGCTAAAGAGGCAACTTTTGCCAACCCAGTTAGCAGGACAGATCTGAGATTGACAGCTCGAGGAAAAATTGGTGACACTGGACTGATTGACCACCTACTGAAGCACATTGATGGCACAGTTACACCATGTGGGAGCAAGCGGTTTCGGCGGTGGTTCAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGGAAAGAGGCTGGGCATCATCCTTATTGGTTTCCACCAGGTTGTGGTGCCTCTGAGCATTATGATTCTTCTGGAGAACTGAGGCTACTCAAGGCAGAAGTGGATAAAATGAAAAGTGATATGCAGGAGCTGCTGGTATCCAAGAAGCAAGAGAAAGATCAAACCAATATGCTGGAGGATTTGGTGAAATGGAAAGCTCAAACTGAGGAAAGGTTGAAACTTGCTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTGGGTGAGTTCATGACATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATTTACAAATGTCATGGGTGATATGCAAGTAGAAAAGCAATACACTGCTACCAACCTTTTAGCTTCTGAGCGATGGGAAGATTGGTTGGAGAGCGGCAATGTGGATAATTTCCAGGGAAATGAACTTGTACCTTGGTTTGAGAATACCACTCCAGTGAACAATGAAGAGGAAGTTATAATCCAAGATCCCCAGTCAGCTCCACCAGATGGATCAAAGACTGGTGATAGCTCAACACAGGACCCTATTTTCACAGCGAAGGAAATGGTTGAATTGGAGAGGACGAGAGATGTGCCTGGGCTGGAATGGGAGAAGCAGACTGAACATCAAGCTAATGTGACTCCTAATTCTTCTGCTACTGCAAGTTCGAAGTCAGATGTTGATAACCTGCATTTGTTTCAGGAAATGTTTCAGGAGTTGTTTAGCTGGAAATCTCAAATGGAGCAGAAAATGACTGAGTTATCAAATTCTGTGAGTGCCATCAAGCAAACATCAAAAGTATCTACTCCAGCCCTTCAGCTGGCAGAAGATGGGAATCTGATTATGGACTATTATCCATGTTACAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

480

Amino Acids

55.19

Weight (kDa)

5.37

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 101 - 183 5.5e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
Acc36I ACCTGC 1 cut(s) 1266
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 2 cut(s) 611, 1079
AccBSI CCGCTC 1 cut(s) 966
AciI CCGC 5 cut(s) 211, 496, 505, 551, 966
AclWI GGATC 2 cut(s) 1052, 1090
AcsI RAATTY 2 cut(s) 872, 1336
AcuI CTGAAG 2 cut(s) 476, 1370
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1390
AgsI TTSAA 4 cut(s) 135, 514, 784, 1142
AjnI CCWGG 3 cut(s) 604, 984, 1165
AleI CACNNNNGTG 1 cut(s) 1025
AlwI GGATC 2 cut(s) 1052, 1090
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 233, 256, 697
ApoI RAATTY 2 cut(s) 872, 1336
Asp700I GAANNNNTTC 1 cut(s) 1278
AspS9I GGNCC 1 cut(s) 1111
AsuHPI GGTGA 5 cut(s) 440, 763, 839, 902, 1106
AsuII TTCGAA 1 cut(s) 1238
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 245, 268, 684
BccI CCATC 6 cut(s) 297, 461, 939, 1073, 1358, 1394
BcgI CGANNNNNNTGC 2 cut(s) 1144, 1178
BciT130I CCWGG 3 cut(s) 606, 986, 1167
BciVI GTATCC 1 cut(s) 715
BfaI CTAG 2 cut(s) 173, 1441
BfuAI ACCTGC 1 cut(s) 1266
BfuI GTATCC 1 cut(s) 715
BglII AGATCT 2 cut(s) 215, 397
BisI GCNGC 4 cut(s) 234, 257, 698, 967
BlsI GCNGC 4 cut(s) 235, 258, 699, 968
Bme1390I CCNGG 3 cut(s) 606, 986, 1167
Bme18I GGWCC 1 cut(s) 1111
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 1111
BmiI GGNNCC 2 cut(s) 616, 1113
BmrFI CCNGG 3 cut(s) 606, 986, 1167
BmrI ACTGGG 2 cut(s) 377, 1057
BmsI GCATC 4 cut(s) 71, 78, 168, 592
BmuI ACTGGG 2 cut(s) 377, 1057
BpmI CTGGAG 4 cut(s) 660, 761, 1008, 1362
Bpu14I TTCGAA 1 cut(s) 1238
BpuEI CTTGAG 2 cut(s) 39, 641
BsaBI GATNNNNATC 1 cut(s) 1404
BsaJI CCNNGG 3 cut(s) 985, 1004, 1166
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1390
Bse1I ACTGG 6 cut(s) 383, 439, 561, 1025, 1063, 1096
Bse3DI GCAATG 2 cut(s) 236, 976
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 3 cut(s) 606, 986, 1167
BseDI CCNNGG 3 cut(s) 985, 1004, 1166
BseGI GGATG 3 cut(s) 62, 352, 586
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1390
BseMI GCAATG 2 cut(s) 236, 976
BseMII CTCAG 6 cut(s) 392, 612, 638, 762, 930, 1317
BseNI ACTGG 6 cut(s) 383, 439, 561, 1025, 1063, 1096
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 3 cut(s) 245, 268, 684
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 414
BslI CCNNNNNNNGG 4 cut(s) 195, 611, 1079, 1390
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 414
Bsp119I TTCGAA 1 cut(s) 1238
Bsp143I GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BspACI CCGC 5 cut(s) 211, 496, 505, 551, 966
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 6 cut(s) 393, 613, 639, 763, 931, 1318
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 616, 1113
BspMI ACCTGC 1 cut(s) 1266
BspPI GGATC 2 cut(s) 1052, 1090
BspT104I TTCGAA 1 cut(s) 1238
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 966
BsrDI GCAATG 2 cut(s) 236, 976
BsrI ACTGG 6 cut(s) 383, 439, 561, 1025, 1063, 1096
BssECI CCNNGG 3 cut(s) 985, 1004, 1166
BssMI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BssT1I CCWWGG 1 cut(s) 1004
Bst2UI CCWGG 3 cut(s) 606, 986, 1167
Bst4CI ACNGT 2 cut(s) 9, 475
Bst6I CTCTTC 2 cut(s) 78, 1032
BstAPI GCANNNNNTGC 3 cut(s) 242, 374, 697
BstBI TTCGAA 1 cut(s) 1238
BstC8I GCNNGC 4 cut(s) 231, 243, 494, 1392
BstDEI CTNAG 8 cut(s) 75, 246, 401, 621, 647, 771, 939, 1326
BstF5I GGATG 3 cut(s) 62, 352, 586
BstKTI GATC 6 cut(s) 218, 291, 400, 727, 1060, 1085
BstMBI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BstMWI GCNNNNNNNGC 7 cut(s) 210, 242, 365, 374, 502, 557, 697
BstNI CCWGG 3 cut(s) 606, 986, 1167
BstSCI CCNGG 3 cut(s) 604, 984, 1165
BstV1I GCAGC 3 cut(s) 245, 268, 684
BstX2I RGATCY 3 cut(s) 215, 397, 1057
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 3 cut(s) 215, 397, 1057
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 958
BtsCI GGATG 3 cut(s) 62, 352, 586
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 14, 432, 915, 1032
BveI ACCTGC 1 cut(s) 1266
Cac8I GCNNGC 4 cut(s) 231, 243, 494, 1392
CaiI CAGNNNCTG 1 cut(s) 697
CciI TCATGA 1 cut(s) 834
Cfr13I GGNCC 1 cut(s) 1111
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 1001
CviAII CATG 6 cut(s) 260, 483, 835, 840, 886, 1428
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 8 cut(s) 75, 246, 401, 621, 647, 771, 939, 1326
DpnI GATC 6 cut(s) 217, 290, 399, 726, 1059, 1084
DpnII GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 2 cut(s) 78, 1032
EarI CTCTTC 2 cut(s) 78, 1032
Eco130I CCWWGG 1 cut(s) 1004
Eco47I GGWCC 1 cut(s) 1111
Eco57I CTGAAG 2 cut(s) 476, 1370
Eco88I CYCGRG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 1111
EcoRII CCWGG 3 cut(s) 604, 984, 1165
EcoT14I CCWWGG 1 cut(s) 1004
ErhI CCWWGG 1 cut(s) 1004
FaeI CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
FatI CATG 6 cut(s) 259, 482, 834, 839, 885, 1427
Fnu4HI GCNGC 4 cut(s) 234, 257, 698, 967
FokI GGATG 3 cut(s) 49, 359, 573
Fsp4HI GCNGC 4 cut(s) 234, 257, 698, 967
FspBI CTAG 2 cut(s) 173, 1441
GluI GCNGC 4 cut(s) 234, 257, 698, 967
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 4 cut(s) 660, 761, 1008, 1362
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 5 cut(s) 95, 131, 632, 1210, 1405
HphI GGTGA 5 cut(s) 440, 763, 839, 902, 1106
Hpy166II GTNNAC 1 cut(s) 1030
Hpy188I TCNGA 8 cut(s) 24, 293, 402, 570, 622, 940, 1246, 1410
Hpy188III TCNNGA 5 cut(s) 173, 639, 835, 1271, 1283
Hpy8I GTNNAC 1 cut(s) 1030
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 799, 1123, 1394
HpyCH4III ACNGT 2 cut(s) 9, 475
HpyCH4V TGCA 7 cut(s) 62, 229, 691, 814, 898, 1232, 1261
HpyF10VI GCNNNNNNNGC 7 cut(s) 210, 242, 365, 374, 502, 557, 697
HpyF3I CTNAG 8 cut(s) 75, 246, 401, 621, 647, 771, 939, 1326
Hsp92II CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
Kzo9I GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
LmnI GCTCC 4 cut(s) 489, 694, 1075, 1312
Lsp1109I GCAGC 3 cut(s) 245, 268, 684
LweI GCATC 4 cut(s) 71, 78, 168, 592
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 2 cut(s) 173, 1441
MaeIII GTNAC 4 cut(s) 428, 475, 1207, 1430
MalI GATC 6 cut(s) 217, 290, 399, 726, 1059, 1084
MbiI CCGCTC 1 cut(s) 966
MboI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
MboII GAAGA 9 cut(s) 92, 95, 104, 312, 627, 962, 1049, 1212, 1409
MflI RGATCY 3 cut(s) 215, 397, 1057
MluCI AATT 6 cut(s) 423, 872, 979, 1142, 1216, 1336
MlyI GAGTC 1 cut(s) 1204
MmeI TCCRAC 3 cut(s) 324, 522, 939
MroXI GAANNNNTTC 1 cut(s) 1278
MseI TTAA 3 cut(s) 39, 113, 149
MslI CAYNNNNRTG 2 cut(s) 465, 1025
MspA1I CMGCKG 2 cut(s) 865, 1390
MspR9I CCNGG 3 cut(s) 606, 986, 1167
MvaI CCWGG 3 cut(s) 606, 986, 1167
MwoI GCNNNNNNNGC 7 cut(s) 210, 242, 365, 374, 502, 557, 697
NdeII GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
NlaIII CATG 6 cut(s) 263, 486, 838, 843, 889, 1431
NlaIV GGNNCC 2 cut(s) 616, 1113
NmuCI GTSAC 2 cut(s) 428, 1207
NspV TTCGAA 1 cut(s) 1238
OliI CACNNNNGTG 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 414
PagI TCATGA 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 1278
PfeI GAWTC 4 cut(s) 95, 131, 632, 1405
PflMI CCANNNNNTGG 2 cut(s) 611, 1079
PkrI GCNGC 4 cut(s) 235, 258, 699, 968
PleI GAGTC 1 cut(s) 1204
PpsI GAGTC 1 cut(s) 1204
PpuMI RGGWCCY 1 cut(s) 1111
PsiI TTATAA 1 cut(s) 1049
Psp5II RGGWCCY 1 cut(s) 1111
Psp6I CCWGG 3 cut(s) 604, 984, 1165
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 3 cut(s) 604, 984, 1165
PspN4I GGNNCC 2 cut(s) 616, 1113
PspPI GGNCC 1 cut(s) 1111
PspPPI RGGWCCY 1 cut(s) 1111
PspXI VCTCGAGB 1 cut(s) 414
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 3 cut(s) 215, 397, 1057
PvuII CAGCTG 2 cut(s) 865, 1390
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
RseI CAYNNNNRTG 2 cut(s) 465, 1025
SaqAI TTAA 3 cut(s) 39, 113, 149
SatI GCNGC 4 cut(s) 234, 257, 698, 967
Sau3AI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
Sau96I GGNCC 1 cut(s) 1111
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 3 cut(s) 606, 986, 1167
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 4 cut(s) 71, 78, 168, 592
Sfr274I CTCGAG 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 1238
SinI GGWCC 1 cut(s) 1111
SlaI CTCGAG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 465, 1025
SmlI CTYRAG 3 cut(s) 54, 414, 656
SmoI CTYRAG 3 cut(s) 54, 414, 656
Sse9I AATT 6 cut(s) 423, 872, 979, 1142, 1216, 1336
SsiI CCGC 5 cut(s) 211, 496, 505, 551, 966
SspI AATATT 1 cut(s) 536
SspMI CTAG 2 cut(s) 173, 1441
StyD4I CCNGG 3 cut(s) 604, 984, 1165
StyI CCWWGG 1 cut(s) 1004
TaaI ACNGT 2 cut(s) 9, 475
TaqI TCGA 2 cut(s) 415, 1238
TasI AATT 6 cut(s) 423, 872, 979, 1142, 1216, 1336
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 4 cut(s) 95, 131, 632, 1405
Tru1I TTAA 3 cut(s) 39, 113, 149
Tru9I TTAA 3 cut(s) 39, 113, 149
TscAI CASTG 4 cut(s) 14, 439, 922, 1032
TseFI GTSAC 2 cut(s) 428, 1207
TseI GCWGC 3 cut(s) 233, 256, 697
Tsp45I GTSAC 2 cut(s) 428, 1207
TspDTI ATGAA 6 cut(s) 120, 156, 692, 823, 1008, 1050
TspRI CASTG 4 cut(s) 14, 439, 922, 1032
Van91I CCANNNNNTGG 2 cut(s) 611, 1079
VpaK11BI GGWCC 1 cut(s) 1111
XapI RAATTY 2 cut(s) 872, 1336
XbaI TCTAGA 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 1278
XspI CTAG 2 cut(s) 173, 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.