Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002893

Physical Location & Seq

Genomic Coordinates Reverse (-)

25225122 .. 25229171

Gene Structure 4050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G287900.19

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGAGAGAGAGACAAAAAAAGCATTCGTTCTCGTTGCATGTGCTTCTGTTACTGGCAATTCAGCTGAGAGACACCCAGATGGCACAGTGGGGTACTCGTCGTAGGCGAGTTAAGTTCCTTGGCCAACATGAAGAAAACAAACCCCAAATTTCTTCCAGCATCACTGAGGAAGAAAATTCAACAGATGAATTTAAAGTAGCTGTGAAAGCTGAACCTCTAGAAATACCAGAAATCAAGAAGAGGAAACGCCTCAGCCTAGGCAAAGGCCGATGGACAACTAGTAGCTCTAAGGGTAGGACAAAGAAGCGTAATAATGTGACAGAAAGATGGACAGCTGAAAGGTATAAGCTGGCAGAGGAAAGTATGATGGAAGTTTTGAAGGCTGAAGGTGCAACTTTTGGAAACCCAATTTCCAGGCTAGAACTCAGATCGTTAGCACGTAAGCGAATTGGTGATACCGGGCTGCTCGATCACTTACTGAAGCACATTGATGGTAAGGTGGCACCAGGTGGGACTGAGCGGTTTCGGCGGTGGTTCAACACCAATGGAACAATGGAGTATTGGTTGGAGAGTGCTGATCTGGTTAACATTCGTCAGGAAGCTGGGGTGCATGATCCTTATTGGATTCCACCATCTAAGTTGATGCCATGTGGTGCCCCCTCAGAAGATTCTGTGTCTGCTGGAGAATTGAAGCTACTCAAGGCAGAAGTGGATAAAATGAAGAGTGATATGCAGGAGCTGCAGTTATCCAAGAAGCAAGAGAAAGACCGAGCCAATCAGCAGAATATGCTTGAGGATTTGATGAAATGGAAAGCTCAGACTGAGCAAAGCTTGAAAGTGATTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTTGAGGAATTAATGATGTGGAAAGCTAAAGTTGAGCAACAGGTAGCTGAAATGACTAATGTCATGAGTAATATGCAAGTACCAAAGCAATACCCTGCCACCAACCCTGAAACATCTGAGCGATGGGAAGATTGGCTAGAGAGCACCAACCTCGATAATTTTCAGGGAAATGAACTTGTGCCTTGGTTTGAGAGCACGAATCTGGTTAATGCTGAGGAAGGAGTTATAATCCAAGATCCCTACCTAGCCCCGCCACTTAGATCAAAGCATGGCGATAGCTCATTTCCAGACCCTTTTTGCAAAATCAAGGAAGAAATTACTGAAATGGAGAGAGATGTGCATGAGCTGATACCAAGGAAACAAAAGGAATATCAAGCTAATGTGACCCCTGATTCTTCTGCTACTGCAAATTCAAAGTCAGAGCTTGATAATTTGTTTATGTTTCAGGAAATGTTACAGGAGTTGTTCAATTGGAAATCTATGACGGAGCAGAAGCTGAGTGAGATGTCAAATTCCGTGAATGCCATCAAGCAGACATCAAAACTAATGAGTCCTCCACTCCCTCCGCAGCTGCCAGAAGATGGAAATCTGAGCATGGAATATCATCCTTGTTTCATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

499

Amino Acids

57.57

Weight (kDa)

6.24

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23610 AT5G23610
fragaria_vesca	FvH4_1g25830
malus_domestica	MD00G1096200.v1.1 MD15G1140600.v1.1
prunus_persica	Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1
pyrus_communis	pycom15g12710 pycom520g01260
rosa_chinensis	RchiOBHm_Chr3g0484951
rosa_laevigata	RLG00000023182
rosa_multiflora	Rmu_co8424235.1_g000001 Rmu_sc0002724.1_g000038
rosa_roxburghii	Rroxscaffold_6G00397310
rosa_rugosa	Rorug03G0214600
rosa_samantha	Rh3AG265100 Rh3BG300600 Rh3CG298400 Rh3DG294300
rosa_wichuraiana	Rw3G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1100
AccB1I	GGYRCC	2 cut(s)	502, 653
AccB7I	CCANNNNNTGG	1 cut(s)	1454
AccBSI	CCGCTC	1 cut(s)	520
AciI	CCGC	4 cut(s)	520, 529, 1124, 1439
AclWI	GGATC	2 cut(s)	608, 1103
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	5 cut(s)	147, 175, 188, 1282, 1384
AcuI	CTGAAG	2 cut(s)	405, 500
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	94, 954
AfiI	CCNNNNNNNGG	1 cut(s)	1454
AgsI	TTSAA	7 cut(s)	180, 379, 538, 691, 835, 1287, 1342
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	413, 505
Alw21I	GWGCWC	2 cut(s)	1019, 1070
Alw26I	GTCTC	2 cut(s)	4, 63
AlwI	GGATC	2 cut(s)	608, 1103
AlwNI	CAGNNNCTG	2 cut(s)	739, 1369
AoxI	GGCC	2 cut(s)	121, 265
ApeKI	GCWGC	4 cut(s)	463, 739, 1441, 1444
ApoI	RAATTY	5 cut(s)	147, 175, 188, 1282, 1384
ArsI	GACNNNNNNTTYG	2 cut(s)	1274, 1306
AseI	ATTAAT	1 cut(s)	884
AspA2I	CCTAGG	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	658
BalI	TGGCCA	1 cut(s)	123
BanI	GGYRCC	2 cut(s)	502, 653
Bbv12I	GWGCWC	2 cut(s)	1019, 1070
BbvCI	CCTCAGC	2 cut(s)	251, 1086
BbvI	GCAGC	4 cut(s)	450, 726, 1431, 1453
BccI	CCATC	9 cut(s)	73, 264, 321, 361, 485, 640, 990, 1406, 1448
BcgI	CGANNNNNNTGC	2 cut(s)	1006, 1040
BciT130I	CCWGG	2 cut(s)	415, 507
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	4, 63
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	6 cut(s)	218, 257, 279, 419, 1010, 1118
BfmI	CTRYAG	1 cut(s)	740
BisI	GCNGC	4 cut(s)	464, 740, 1442, 1445
BlnI	CCTAGG	1 cut(s)	256
BlsI	GCNGC	4 cut(s)	465, 741, 1443, 1446
Bme1390I	CCNGG	3 cut(s)	415, 460, 507
BmiI	GGNNCC	2 cut(s)	504, 655
BmrFI	CCNGG	3 cut(s)	415, 460, 507
BmsI	GCATC	2 cut(s)	168, 633
BoxI	GACNNNNGTC	1 cut(s)	932
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	2 cut(s)	251, 1086
BpuEI	CTTGAG	2 cut(s)	683, 812
BpuMI	CCSGG	1 cut(s)	460
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	1458
BsaJI	CCNNGG	4 cut(s)	118, 256, 1055, 1226
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 728, 758
Bsc4I	CCNNNNNNNGG	1 cut(s)	1454
Bse1I	ACTGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	1458
BseBI	CCWGG	2 cut(s)	415, 507
BseDI	CCNNGG	4 cut(s)	118, 256, 1055, 1226
BseGI	GGATG	1 cut(s)	1477
BseJI	GATNNNNATC	1 cut(s)	1458
BseLI	CCNNNNNNNGG	1 cut(s)	1454
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	4 cut(s)	450, 726, 1431, 1453
BseYI	CCCAGC	1 cut(s)	602
BshFI	GGCC	2 cut(s)	123, 267
BshNI	GGYRCC	2 cut(s)	502, 653
BsiHKAI	GWGCWC	2 cut(s)	1019, 1070
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	1454
BsmAI	GTCTC	2 cut(s)	4, 63
BsmFI	GGGAC	1 cut(s)	526
BsmI	GAATGC	2 cut(s)	22, 1399
BsnI	GGCC	2 cut(s)	123, 267
Bsp1286I	GDGCHC	3 cut(s)	658, 1019, 1070
Bsp143I	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
BspACI	CCGC	4 cut(s)	520, 529, 1124, 1439
BspANI	GGCC	2 cut(s)	123, 267
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	504, 655
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	2 cut(s)	608, 1103
BspT107I	GGYRCC	2 cut(s)	502, 653
BsrBI	CCGCTC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	118, 256, 1055, 1226
BssMI	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
BssT1I	CCWWGG	4 cut(s)	118, 256, 1055, 1226
Bst2UI	CCWGG	2 cut(s)	415, 507
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	233, 716
BstAPI	GCANNNNNTGC	2 cut(s)	739, 787
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	1477
BstKTI	GATC	6 cut(s)	431, 472, 580, 616, 1111, 1136
BstMAI	GTCTC	2 cut(s)	4, 63
BstMBI	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 389, 526, 739, 787
BstNI	CCWGG	2 cut(s)	415, 507
BstNSI	RCATGY	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	932
BstSCI	CCNGG	3 cut(s)	413, 458, 505
BstSFI	CTRYAG	1 cut(s)	740
BstSLI	GKGCMC	1 cut(s)	658
BstV1I	GCAGC	4 cut(s)	450, 726, 1431, 1453
BstX2I	RGATCY	1 cut(s)	1108
BstYI	RGATCY	1 cut(s)	1108
BsuRI	GGCC	2 cut(s)	123, 267
BtgZI	GCGATG	1 cut(s)	1009
BtsCI	GGATG	1 cut(s)	1477
BtsIMutI	CAGTG	2 cut(s)	92, 162
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	2 cut(s)	739, 1369
CciI	TCATGA	1 cut(s)	936
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	93, 953
CviAII	CATG	9 cut(s)	38, 128, 611, 648, 937, 1142, 1214, 1468, 1489
CviQI	GTAC	2 cut(s)	93, 953
DpnI	GATC	6 cut(s)	430, 471, 579, 615, 1110, 1135
DpnII	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
DraI	TTTAAA	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	233, 716
EarI	CTCTTC	2 cut(s)	233, 716
Eco130I	CCWWGG	4 cut(s)	118, 256, 1055, 1226
Eco57I	CTGAAG	2 cut(s)	405, 500
EcoRII	CCWGG	2 cut(s)	413, 505
EcoT14I	CCWWGG	4 cut(s)	118, 256, 1055, 1226
ErhI	CCWWGG	4 cut(s)	118, 256, 1055, 1226
FaeI	CATG	9 cut(s)	41, 131, 614, 651, 940, 1145, 1217, 1471, 1492
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	9 cut(s)	37, 127, 610, 647, 936, 1141, 1213, 1467, 1488
FauI	CCCGC	1 cut(s)	1131
Fnu4HI	GCNGC	4 cut(s)	464, 740, 1442, 1445
FokI	GGATG	1 cut(s)	1464
Fsp4HI	GCNGC	4 cut(s)	464, 740, 1442, 1445
FspBI	CTAG	6 cut(s)	218, 257, 279, 419, 1010, 1118
GluI	GCNGC	4 cut(s)	464, 740, 1442, 1445
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	123, 267
HapII	CCGG	1 cut(s)	459
Hin1II	CATG	9 cut(s)	41, 131, 614, 651, 940, 1145, 1217, 1471, 1492
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	829
HinfI	GANTC	5 cut(s)	625, 668, 1072, 1265, 1423
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	6 cut(s)	428, 664, 819, 991, 1294, 1464
Hpy188III	TCNNGA	6 cut(s)	218, 235, 596, 937, 1160, 1319
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	4 cut(s)	373, 380, 850, 1085
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 389, 526, 739, 787
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	9 cut(s)	41, 131, 614, 651, 940, 1145, 1217, 1471, 1492
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
LmnI	GCTCC	2 cut(s)	736, 1360
Lsp1109I	GCAGC	4 cut(s)	450, 726, 1431, 1453
LweI	GCATC	2 cut(s)	168, 633
MabI	ACCWGGT	1 cut(s)	505
MaeI	CTAG	6 cut(s)	218, 257, 279, 419, 1010, 1118
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	4 cut(s)	48, 316, 1255, 1326
MalI	GATC	6 cut(s)	430, 471, 579, 615, 1110, 1135
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
MfeI	CAATTG	1 cut(s)	1342
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	3 cut(s)	658, 1019, 1070
MlsI	TGGCCA	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	1432
MmeI	TCCRAC	1 cut(s)	546
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	5 cut(s)	111, 192, 585, 884, 1080
MslI	CAYNNNNRTG	2 cut(s)	77, 489
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	3 cut(s)	64, 335, 1444
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	3 cut(s)	415, 460, 507
MunI	CAATTG	1 cut(s)	1342
Mva1269I	GAATGC	2 cut(s)	22, 1399
MvaI	CCWGG	2 cut(s)	415, 507
MwoI	GCNNNNNNNGC	5 cut(s)	206, 389, 526, 739, 787
NciI	CCSGG	1 cut(s)	460
NdeII	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
NlaIII	CATG	9 cut(s)	41, 131, 614, 651, 940, 1145, 1217, 1471, 1492
NlaIV	GGNNCC	2 cut(s)	504, 655
NmuCI	GTSAC	2 cut(s)	316, 1255
NspI	RCATGY	1 cut(s)	41
PagI	TCATGA	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	2 cut(s)	22, 1399
PfeI	GAWTC	4 cut(s)	625, 668, 1072, 1265
PflMI	CCANNNNNTGG	1 cut(s)	1454
PkrI	GCNGC	4 cut(s)	465, 741, 1443, 1446
PleI	GAGTC	1 cut(s)	1431
PpsI	GAGTC	1 cut(s)	1431
Ppu21I	YACGTR	1 cut(s)	440
PshAI	GACNNNNGTC	1 cut(s)	932
PshBI	ATTAAT	1 cut(s)	884
PsiI	TTATAA	1 cut(s)	1100
Psp6I	CCWGG	2 cut(s)	413, 505
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	2 cut(s)	413, 505
PspN4I	GGNNCC	2 cut(s)	504, 655
PstI	CTGCAG	1 cut(s)	744
PstNI	CAGNNNCTG	2 cut(s)	739, 1369
PsuI	RGATCY	1 cut(s)	1108
PvuII	CAGCTG	3 cut(s)	64, 335, 1444
RsaI	GTAC	2 cut(s)	94, 954
RsaNI	GTAC	2 cut(s)	93, 953
RseI	CAYNNNNRTG	2 cut(s)	77, 489
SaqAI	TTAA	5 cut(s)	111, 192, 585, 884, 1080
SatI	GCNGC	4 cut(s)	464, 740, 1442, 1445
Sau3AI	GATC	6 cut(s)	428, 469, 577, 613, 1108, 1133
SchI	GAGTC	1 cut(s)	1432
ScrFI	CCNGG	3 cut(s)	415, 460, 507
SduI	GDGCHC	3 cut(s)	658, 1019, 1070
SexAI	ACCWGGT	1 cut(s)	505
SfaNI	GCATC	2 cut(s)	168, 633
SfcI	CTRYAG	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	77, 489
SmlI	CTYRAG	2 cut(s)	698, 791
SmoI	CTYRAG	2 cut(s)	698, 791
SpeI	ACTAGT	1 cut(s)	278
SsiI	CCGC	4 cut(s)	520, 529, 1124, 1439
SspMI	CTAG	6 cut(s)	218, 257, 279, 419, 1010, 1118
StyD4I	CCNGG	3 cut(s)	413, 458, 505
StyI	CCWWGG	4 cut(s)	118, 256, 1055, 1226
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	468, 1026
TaqII	GACCGA	1 cut(s)	783
TfiI	GAWTC	4 cut(s)	625, 668, 1072, 1265
Tru1I	TTAA	5 cut(s)	111, 192, 585, 884, 1080
Tru9I	TTAA	5 cut(s)	111, 192, 585, 884, 1080
TscAI	CASTG	2 cut(s)	92, 169
TseFI	GTSAC	2 cut(s)	316, 1255
TseI	GCWGC	4 cut(s)	463, 739, 1441, 1444
Tsp45I	GTSAC	2 cut(s)	316, 1255
TspDTI	ATGAA	6 cut(s)	144, 201, 734, 818, 1059, 1477
TspGWI	ACGGA	2 cut(s)	1373, 1378
TspRI	CASTG	2 cut(s)	92, 169
Van91I	CCANNNNNTGG	1 cut(s)	1454
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	5 cut(s)	147, 175, 188, 1282, 1384
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmaJI	CCTAGG	1 cut(s)	256
XspI	CTAG	6 cut(s)	218, 257, 279, 419, 1010, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.