RLG00000023182

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002893
Physical Location & Seq
Forward (+)
19542910 .. 19546197
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023182

Sequence Viewer

Length: 1494 bp
ATGGATTTAGGGACTGAGACTCTCACTCTCACTCGCTTCATCTCAACACCGTCTCCTCCGATTTCTGCTCCGACCAAACTCACCAGTTGTGGGCGACTGGGGAAGCATAAAAAGATTCTCATCACTAAGGAAGAAGAGGTAGAAGATTCCAAAGATGAAGTTTTAAGAGCTGTGGTAGAGGATTCAAAAGATGAAGTTTTAAGAGCTGTGAAAACTGAACCTCTAGAGATGCCAGAACCCAAAAGGAGGAAGTGCCTTGACCGCAGATCTAAAGATGTGCAGGCAGCATTACGTGCTAAGAAAAGGCAGCATGGGTTTAGGCCAATGGAGAGAAATGAGATCATGGGAGGAAGATGGAATGTTGAGAGGTATAAGAAAGCAGAGCAAAGTCTGTTGGATGTTTTGGAGGCTAAAGAGGCAACTTTTGCCAACCCAGTTAGCAGGACAGATCTGAGATTGACAGCTCGAGGAAAAATTGGTGACACTGGGCTGATTGACCACCTACTGAAGCACATTGATGGCACAGTTACACCATGTGGGAGCAAGCGGTTTCGGCGGTGGTTCAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGGAAAGAGGCTGGGCATCATCCTTATTGGTTTCCACCAGGTTGTGGTGCCTCTGAGCATTATGATTCTTCTGGAGAACTGAGGCTACTCAAGGCAGAAGTGGATAAAATGAAAAGTGATATGCAGGAGCTGCTGGTATCCAAGAAGCAAGAGAAAGATCAAACCAATATGCTGGAGGATTTGGTGAAATGGAAAGCTCAAACTGAGGAAAGGTTGAAACTTGCTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTGGGTGAGTTCATGACATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATTTACAAATGTCATGAGTAATATGCAAGTAGAAAAGCAATACACTGCTACCAACCTTTTAGCTTCTGAGCAATGGGAAGATTGGTTGGAGAGCGGCAATGTGGATAATTTCCAGGGAAATGAACTTGTACCTTGGTTTGAGAATACCACTCCAGTGAACAATGAAGAGGAAGTTATAATCCAAGATCCCCAGTCAGCCCCACCAGATGGATCAAAGACTGGTGATAGCTCATCACAGGACCCTATTTTCACAGCGGAGGAAATGGTTGAATTGGAGAGGACGAGAGATGTGCCTAGGCTGGAATGGGAGAAGCAGACTGAACATCAAGCTAATGTGACTCCTAATTCTTCTGCTACTGCAAGTTCGAAGTCAGATGTTGATAACCTGCATTTGTTTCAGGAAATGTTTCAGGAGTTGTTTAGCTGGAAATCTCAAATGGAGCAGAAAATGACGGAGTTATCAAATTCTGTGAGTGCCATCAAGCAAACATCAAAAGTATCTACTCCAGCCCTTCAGCTGCCAGAAGATGGGAATCTGAGTATGGACTATTTTCCATGTTACAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

498

Amino Acids

56.85

Weight (kDa)

5.32

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 118 - 200 5.8e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1100
Acc36I ACCTGC 1 cut(s) 1317
AccB1I GGYRCC 1 cut(s) 665
AccB7I CCANNNNNTGG 3 cut(s) 662, 1130, 1451
AccBSI CCGCTC 1 cut(s) 1017
AciI CCGC 6 cut(s) 262, 547, 556, 602, 1017, 1178
AclWI GGATC 2 cut(s) 1103, 1141
AcsI RAATTY 2 cut(s) 923, 1387
AcuI CTGAAG 2 cut(s) 527, 1421
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 1 cut(s) 1053
AfiI CCNNNNNNNGG 5 cut(s) 90, 246, 662, 1130, 1451
AgsI TTSAA 4 cut(s) 186, 565, 835, 1193
AjnI CCWGG 2 cut(s) 655, 1035
AleI CACNNNNGTG 1 cut(s) 1076
Alw26I GTCTC 2 cut(s) 11, 57
AlwI GGATC 2 cut(s) 1103, 1141
AlwNI CAGNNNCTG 1 cut(s) 748
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 4 cut(s) 284, 307, 748, 1441
ApoI RAATTY 2 cut(s) 923, 1387
Asp700I GAANNNNTTC 1 cut(s) 1329
AspA2I CCTAGG 1 cut(s) 1217
AspS9I GGNCC 1 cut(s) 1162
AsuHPI GGTGA 5 cut(s) 73, 491, 814, 890, 1157
AsuII TTCGAA 1 cut(s) 1289
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 1 cut(s) 1162
AvrII CCTAGG 1 cut(s) 1217
BanI GGYRCC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 296, 319, 735, 1428
BccI CCATC 5 cut(s) 348, 512, 1124, 1409, 1445
BcgI CGANNNNNNTGC 2 cut(s) 1195, 1229
BciT130I CCWGG 2 cut(s) 657, 1037
BciVI GTATCC 1 cut(s) 766
BcoDI GTCTC 2 cut(s) 11, 57
BfaI CTAG 2 cut(s) 224, 1218
BfuAI ACCTGC 1 cut(s) 1317
BfuI GTATCC 1 cut(s) 766
BglII AGATCT 2 cut(s) 266, 448
BisI GCNGC 5 cut(s) 285, 308, 749, 1018, 1442
BlnI CCTAGG 1 cut(s) 1217
BlsI GCNGC 5 cut(s) 286, 309, 750, 1019, 1443
Bme1390I CCNGG 2 cut(s) 657, 1037
Bme18I GGWCC 1 cut(s) 1162
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 1162
BmiI GGNNCC 2 cut(s) 667, 1164
BmrFI CCNGG 2 cut(s) 657, 1037
BmrI ACTGGG 4 cut(s) 107, 428, 495, 1108
BmsI GCATC 2 cut(s) 219, 643
BmuI ACTGGG 4 cut(s) 107, 428, 495, 1108
BpmI CTGGAG 4 cut(s) 711, 812, 1059, 1413
Bpu14I TTCGAA 1 cut(s) 1289
BpuEI CTTGAG 1 cut(s) 692
BsaAI YACGTR 1 cut(s) 293
BsaBI GATNNNNATC 2 cut(s) 119, 1455
BsaJI CCNNGG 3 cut(s) 1036, 1055, 1217
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 246, 662, 1130, 1451
Bse1I ACTGG 8 cut(s) 84, 102, 434, 490, 612, 1076, 1114, 1147
Bse3DI GCAATG 2 cut(s) 1001, 1027
Bse8I GATNNNNATC 2 cut(s) 119, 1455
BseBI CCWGG 2 cut(s) 657, 1037
BseDI CCNNGG 3 cut(s) 1036, 1055, 1217
BseGI GGATG 2 cut(s) 403, 637
BseJI GATNNNNATC 2 cut(s) 119, 1455
BseLI CCNNNNNNNGG 5 cut(s) 90, 246, 662, 1130, 1451
BseMI GCAATG 2 cut(s) 1001, 1027
BseMII CTCAG 7 cut(s) 6, 443, 663, 689, 813, 981, 1451
BseNI ACTGG 8 cut(s) 84, 102, 434, 490, 612, 1076, 1114, 1147
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 296, 319, 735, 1428
BseYI CCCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 5 cut(s) 90, 246, 662, 1130, 1451
BsmAI GTCTC 2 cut(s) 11, 57
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 1289
Bsp143I GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
BspACI CCGC 6 cut(s) 262, 547, 556, 602, 1017, 1178
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 7 cut(s) 7, 444, 664, 690, 814, 982, 1452
BspHI TCATGA 2 cut(s) 885, 936
BspLI GGNNCC 2 cut(s) 667, 1164
BspMI ACCTGC 1 cut(s) 1317
BspPI GGATC 2 cut(s) 1103, 1141
BspT104I TTCGAA 1 cut(s) 1289
BspT107I GGYRCC 1 cut(s) 665
BsrBI CCGCTC 1 cut(s) 1017
BsrDI GCAATG 2 cut(s) 1001, 1027
BsrI ACTGG 8 cut(s) 84, 102, 434, 490, 612, 1076, 1114, 1147
BssECI CCNNGG 3 cut(s) 1036, 1055, 1217
BssMI GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
BssT1I CCWWGG 2 cut(s) 1055, 1217
Bst2UI CCWGG 2 cut(s) 657, 1037
Bst4CI ACNGT 2 cut(s) 51, 526
Bst6I CTCTTC 2 cut(s) 129, 1083
BstAPI GCANNNNNTGC 3 cut(s) 293, 425, 748
BstBAI YACGTR 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 1289
BstC8I GCNNGC 2 cut(s) 282, 545
BstDEI CTNAG 9 cut(s) 15, 126, 297, 452, 672, 698, 822, 990, 1460
BstF5I GGATG 2 cut(s) 403, 637
BstKTI GATC 6 cut(s) 269, 342, 451, 778, 1111, 1136
BstMAI GTCTC 2 cut(s) 11, 57
BstMBI GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
BstMWI GCNNNNNNNGC 7 cut(s) 261, 293, 416, 425, 553, 608, 748
BstNI CCWGG 2 cut(s) 657, 1037
BstSCI CCNGG 2 cut(s) 655, 1035
BstV1I GCAGC 4 cut(s) 296, 319, 735, 1428
BstX2I RGATCY 3 cut(s) 266, 448, 1108
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 3 cut(s) 266, 448, 1108
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 403, 637
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 3 cut(s) 483, 966, 1083
BveI ACCTGC 1 cut(s) 1317
Cac8I GCNNGC 2 cut(s) 282, 545
CaiI CAGNNNCTG 1 cut(s) 748
CciI TCATGA 2 cut(s) 885, 936
Cfr13I GGNCC 1 cut(s) 1162
CsiI ACCWGGT 1 cut(s) 655
Csp6I GTAC 1 cut(s) 1052
CviAII CATG 7 cut(s) 311, 343, 534, 886, 891, 937, 1479
CviQI GTAC 1 cut(s) 1052
DdeI CTNAG 9 cut(s) 15, 126, 297, 452, 672, 698, 822, 990, 1460
DpnI GATC 6 cut(s) 268, 341, 450, 777, 1110, 1135
DpnII GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
DraIII CACNNNGTG 1 cut(s) 536
Eam1104I CTCTTC 2 cut(s) 129, 1083
EarI CTCTTC 2 cut(s) 129, 1083
Eco130I CCWWGG 2 cut(s) 1055, 1217
Eco47I GGWCC 1 cut(s) 1162
Eco57I CTGAAG 2 cut(s) 527, 1421
Eco88I CYCGRG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 1162
EcoRII CCWGG 2 cut(s) 655, 1035
EcoT14I CCWWGG 2 cut(s) 1055, 1217
ErhI CCWWGG 2 cut(s) 1055, 1217
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 7 cut(s) 314, 346, 537, 889, 894, 940, 1482
FaqI GGGAC 1 cut(s) 25
FatI CATG 7 cut(s) 310, 342, 533, 885, 890, 936, 1478
Fnu4HI GCNGC 5 cut(s) 285, 308, 749, 1018, 1442
FokI GGATG 2 cut(s) 410, 624
Fsp4HI GCNGC 5 cut(s) 285, 308, 749, 1018, 1442
FspBI CTAG 2 cut(s) 224, 1218
GluI GCNGC 5 cut(s) 285, 308, 749, 1018, 1442
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 4 cut(s) 711, 812, 1059, 1413
HaeIII GGCC 1 cut(s) 322
Hin1II CATG 7 cut(s) 314, 346, 537, 889, 894, 940, 1482
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 7 cut(s) 19, 115, 146, 182, 683, 1261, 1456
HphI GGTGA 5 cut(s) 73, 491, 814, 890, 1157
Hpy166II GTNNAC 1 cut(s) 1081
Hpy188I TCNGA 8 cut(s) 60, 72, 453, 621, 673, 991, 1297, 1461
Hpy188III TCNNGA 6 cut(s) 224, 690, 886, 937, 1322, 1334
Hpy8I GTNNAC 1 cut(s) 1081
HpyAV CCTTC 2 cut(s) 850, 1445
HpyCH4III ACNGT 2 cut(s) 51, 526
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 280, 742, 865, 949, 1283, 1312
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 293, 416, 425, 553, 608, 748
HpyF3I CTNAG 9 cut(s) 15, 126, 297, 452, 672, 698, 822, 990, 1460
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 7 cut(s) 314, 346, 537, 889, 894, 940, 1482
Kzo9I GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
LmnI GCTCC 4 cut(s) 73, 540, 745, 1363
Lsp1109I GCAGC 4 cut(s) 296, 319, 735, 1428
LweI GCATC 2 cut(s) 219, 643
MabI ACCWGGT 1 cut(s) 655
MaeI CTAG 2 cut(s) 224, 1218
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 4 cut(s) 479, 526, 1258, 1481
MalI GATC 6 cut(s) 268, 341, 450, 777, 1110, 1135
MbiI CCGCTC 1 cut(s) 1017
MboI GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
MboII GAAGA 9 cut(s) 143, 146, 155, 363, 678, 1013, 1100, 1263, 1460
MflI RGATCY 3 cut(s) 266, 448, 1108
MluCI AATT 6 cut(s) 474, 923, 1030, 1193, 1267, 1387
MlyI GAGTC 2 cut(s) 13, 1255
MmeI TCCRAC 4 cut(s) 95, 375, 573, 990
MroXI GAANNNNTTC 1 cut(s) 1329
MseI TTAA 2 cut(s) 164, 200
MslI CAYNNNNRTG 2 cut(s) 516, 1076
MspA1I CMGCKG 3 cut(s) 916, 1178, 1441
MspR9I CCNGG 2 cut(s) 657, 1037
MvaI CCWGG 2 cut(s) 657, 1037
MwoI GCNNNNNNNGC 7 cut(s) 261, 293, 416, 425, 553, 608, 748
NdeII GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
NlaIII CATG 7 cut(s) 314, 346, 537, 889, 894, 940, 1482
NlaIV GGNNCC 2 cut(s) 667, 1164
NmuCI GTSAC 2 cut(s) 479, 1258
NspV TTCGAA 1 cut(s) 1289
OliI CACNNNNGTG 1 cut(s) 1076
PaeR7I CTCGAG 1 cut(s) 465
PagI TCATGA 2 cut(s) 885, 936
PdmI GAANNNNTTC 1 cut(s) 1329
PfeI GAWTC 5 cut(s) 115, 146, 182, 683, 1456
PflMI CCANNNNNTGG 3 cut(s) 662, 1130, 1451
PkrI GCNGC 5 cut(s) 286, 309, 750, 1019, 1443
PleI GAGTC 2 cut(s) 13, 1255
PpsI GAGTC 2 cut(s) 13, 1255
Ppu21I YACGTR 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 1162
PsiI TTATAA 1 cut(s) 1100
Psp5II RGGWCCY 1 cut(s) 1162
Psp6I CCWGG 2 cut(s) 655, 1035
PspFI CCCAGC 1 cut(s) 629
PspGI CCWGG 2 cut(s) 655, 1035
PspN4I GGNNCC 2 cut(s) 667, 1164
PspPI GGNCC 1 cut(s) 1162
PspPPI RGGWCCY 1 cut(s) 1162
PspXI VCTCGAGB 1 cut(s) 465
PsrI GAACNNNNNNTAC 2 cut(s) 687, 719
PstNI CAGNNNCTG 1 cut(s) 748
PsuI RGATCY 3 cut(s) 266, 448, 1108
PvuII CAGCTG 2 cut(s) 916, 1441
RsaI GTAC 1 cut(s) 1053
RsaNI GTAC 1 cut(s) 1052
RseI CAYNNNNRTG 2 cut(s) 516, 1076
SaqAI TTAA 2 cut(s) 164, 200
SatI GCNGC 5 cut(s) 285, 308, 749, 1018, 1442
Sau3AI GATC 6 cut(s) 266, 339, 448, 775, 1108, 1133
Sau96I GGNCC 1 cut(s) 1162
SchI GAGTC 2 cut(s) 13, 1255
ScrFI CCNGG 2 cut(s) 657, 1037
SexAI ACCWGGT 1 cut(s) 655
SfaNI GCATC 2 cut(s) 219, 643
Sfr274I CTCGAG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 1289
SinI GGWCC 1 cut(s) 1162
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 516, 1076
SmlI CTYRAG 2 cut(s) 465, 707
SmoI CTYRAG 2 cut(s) 465, 707
Sse9I AATT 6 cut(s) 474, 923, 1030, 1193, 1267, 1387
SsiI CCGC 6 cut(s) 262, 547, 556, 602, 1017, 1178
SspI AATATT 1 cut(s) 587
SspMI CTAG 2 cut(s) 224, 1218
StyD4I CCNGG 2 cut(s) 655, 1035
StyI CCWWGG 2 cut(s) 1055, 1217
TaaI ACNGT 2 cut(s) 51, 526
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 466, 1289
TasI AATT 6 cut(s) 474, 923, 1030, 1193, 1267, 1387
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 5 cut(s) 115, 146, 182, 683, 1456
Tru1I TTAA 2 cut(s) 164, 200
Tru9I TTAA 2 cut(s) 164, 200
TscAI CASTG 3 cut(s) 490, 973, 1083
TseFI GTSAC 2 cut(s) 479, 1258
TseI GCWGC 4 cut(s) 284, 307, 748, 1441
Tsp45I GTSAC 2 cut(s) 479, 1258
TspDTI ATGAA 7 cut(s) 28, 171, 207, 743, 874, 1059, 1101
TspGWI ACGGA 1 cut(s) 1391
TspRI CASTG 3 cut(s) 490, 973, 1083
Van91I CCANNNNNTGG 3 cut(s) 662, 1130, 1451
VpaK11BI GGWCC 1 cut(s) 1162
XapI RAATTY 2 cut(s) 923, 1387
XbaI TCTAGA 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 465
XmaJI CCTAGG 1 cut(s) 1217
XmnI GAANNNNTTC 1 cut(s) 1329
XspI CTAG 2 cut(s) 224, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.