Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002724.1

Orthogroup ID

OG0002893

Physical Location & Seq

Genomic Coordinates Forward (+)

193479 .. 195447

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002724.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atggcacagtggggtgttcgtcggagagttgtgttccttaaagaaaataatcctcaagttgcatccagcatcactaaggaagaaaaggtagaagattccaaagatgaagttgtaagagctgtggtagaggattcaaaagacgaagttttaagagctgtgaaaactgaacctctagagatgccagaacccaaaaggaggaagtgccttgaccgcagatctaaagatgtgcaggcagcattgcgtgctaagaaaaggcaacatgggtttaggccaatggagagaaatgagatcataggaggaagatggaatgttgagaggtataagaaagcagagcaaagtctgttggatgttttggaggctaaagaggcaacttttgccaacccagttagcaggacagatctgagattgacagctcgaggaaaaattggtgacactggactgattgaccacctactgaagcacattgatggcacagttacaccatgtgggagcaagcggtttcggcggtggttcaaccacaatggaataatggaatattggttggagagtgcggaactggctgacattcggaaagaggctgggcatcatccttattggtttccaccaggttgtggtgcctctgagcattatgattcttctggagaactgaggctactcaaggcagaagtggataaaatgaaaagtgatatgcaggagctactggtatccaagaagcaagagaaagatcaaaccaatatgctggaggatttggtgcaatggaaagctcaaactgaggaaaggttgaaacttgctttaggttcttggaagggtatgcaggacaagttgggtgagttcgtgacatggaaagcttctgttgagcaacagctggtggaatttacaaatgtcatgagtgatatgcaagtagaaaagcaatacactgctaccaaccttttagcttctgagcgatgggaagattggttggagagcggcaatgtggataatttccagggaaatgaacttgtaccttggtttgagaataccactccagtgaacaatgaagaggaagttctaatccaagatccccagtcagccccaccagatggatcaaagactggtgatagctcaacacaggaccctattttcacagcgaaggaaatggttgaattggagaggacgagagatgtgcctgggctggaatgggagaagcagactgaacatcaagctaatgtgactcctaattcttctgctactgcaagttcgaagtcagatgttgataacctgcatttgtttcaggaaatgtttcaggagttgtttagctggaaatctcaaatggagcagaaaatgactgagttatcaaattctgtgagtgccatcaagcaaacatcaaaagtatctactccagcccgtcagctgccagaagatgggaatctgattatggactattatccatgttacaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

480

Amino Acids

55.18

Weight (kDa)

5.37

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23610 AT5G23610
fragaria_vesca	FvH4_1g25830
malus_domestica	MD00G1096200.v1.1 MD15G1140600.v1.1
prunus_persica	Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1 Prupe.4G287900_v2.0.a1
pyrus_communis	pycom15g12710 pycom520g01260
rosa_chinensis	RchiOBHm_Chr3g0484951
rosa_laevigata	RLG00000023182
rosa_multiflora	Rmu_co8424235.1_g000001 Rmu_sc0002724.1_g000038
rosa_roxburghii	Rroxscaffold_6G00397310
rosa_rugosa	Rorug03G0214600
rosa_samantha	Rh3AG265100 Rh3BG300600 Rh3CG298400 Rh3DG294300
rosa_wichuraiana	Rw3G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1266
AccB1I	GGYRCC	1 cut(s)	614
AccB7I	CCANNNNNTGG	3 cut(s)	611, 1079, 1400
AccBSI	CCGCTC	1 cut(s)	966
AciI	CCGC	5 cut(s)	211, 496, 505, 551, 966
AclWI	GGATC	2 cut(s)	1052, 1090
AcsI	RAATTY	2 cut(s)	872, 1336
AcuI	CTGAAG	1 cut(s)	476
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	4 cut(s)	195, 611, 1079, 1400
AgsI	TTSAA	4 cut(s)	135, 514, 784, 1142
AjnI	CCWGG	3 cut(s)	604, 984, 1165
AleI	CACNNNNGTG	1 cut(s)	1025
AlwI	GGATC	2 cut(s)	1052, 1090
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	233, 1390
ApoI	RAATTY	2 cut(s)	872, 1336
Asp700I	GAANNNNTTC	1 cut(s)	1278
AspS9I	GGNCC	1 cut(s)	1111
AsuHPI	GGTGA	3 cut(s)	440, 839, 1106
AsuII	TTCGAA	1 cut(s)	1238
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	1111
BanI	GGYRCC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	245, 1377
BccI	CCATC	6 cut(s)	297, 461, 939, 1073, 1358, 1394
BcgI	CGANNNNNNTGC	2 cut(s)	1144, 1178
BciT130I	CCWGG	3 cut(s)	606, 986, 1167
BciVI	GTATCC	1 cut(s)	715
BfaI	CTAG	2 cut(s)	173, 1441
BfuAI	ACCTGC	1 cut(s)	1266
BfuI	GTATCC	1 cut(s)	715
BglII	AGATCT	2 cut(s)	215, 397
BisI	GCNGC	3 cut(s)	234, 967, 1391
BlsI	GCNGC	3 cut(s)	235, 968, 1392
Bme1390I	CCNGG	3 cut(s)	606, 986, 1167
Bme18I	GGWCC	1 cut(s)	1111
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	1111
BmiI	GGNNCC	2 cut(s)	616, 1113
BmrFI	CCNGG	3 cut(s)	606, 986, 1167
BmrI	ACTGGG	2 cut(s)	377, 1057
BmsI	GCATC	4 cut(s)	71, 78, 168, 592
BmuI	ACTGGG	2 cut(s)	377, 1057
BpmI	CTGGAG	4 cut(s)	660, 761, 1008, 1362
Bpu14I	TTCGAA	1 cut(s)	1238
BpuEI	CTTGAG	2 cut(s)	39, 641
BsaBI	GATNNNNATC	1 cut(s)	1404
BsaJI	CCNNGG	3 cut(s)	985, 1004, 1166
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 611, 1079, 1400
Bse1I	ACTGG	7 cut(s)	383, 439, 561, 705, 1025, 1063, 1096
Bse3DI	GCAATG	3 cut(s)	236, 761, 976
Bse8I	GATNNNNATC	1 cut(s)	1404
BseBI	CCWGG	3 cut(s)	606, 986, 1167
BseDI	CCNNGG	3 cut(s)	985, 1004, 1166
BseGI	GGATG	3 cut(s)	62, 352, 586
BseJI	GATNNNNATC	1 cut(s)	1404
BseLI	CCNNNNNNNGG	4 cut(s)	195, 611, 1079, 1400
BseMI	GCAATG	3 cut(s)	236, 761, 976
BseMII	CTCAG	6 cut(s)	392, 612, 638, 762, 930, 1317
BseNI	ACTGG	7 cut(s)	383, 439, 561, 705, 1025, 1063, 1096
BseXI	GCAGC	2 cut(s)	245, 1377
BseYI	CCCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	414
BslI	CCNNNNNNNGG	4 cut(s)	195, 611, 1079, 1400
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	414
Bsp119I	TTCGAA	1 cut(s)	1238
Bsp143I	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
BspACI	CCGC	5 cut(s)	211, 496, 505, 551, 966
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	6 cut(s)	393, 613, 639, 763, 931, 1318
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	616, 1113
BspMI	ACCTGC	1 cut(s)	1266
BspPI	GGATC	2 cut(s)	1052, 1090
BspT104I	TTCGAA	1 cut(s)	1238
BspT107I	GGYRCC	1 cut(s)	614
BsrBI	CCGCTC	1 cut(s)	966
BsrDI	GCAATG	3 cut(s)	236, 761, 976
BsrI	ACTGG	7 cut(s)	383, 439, 561, 705, 1025, 1063, 1096
BssECI	CCNNGG	3 cut(s)	985, 1004, 1166
BssMI	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
BssT1I	CCWWGG	1 cut(s)	1004
Bst2UI	CCWGG	3 cut(s)	606, 986, 1167
Bst4CI	ACNGT	2 cut(s)	9, 475
Bst6I	CTCTTC	1 cut(s)	1032
BstAPI	GCANNNNNTGC	2 cut(s)	242, 374
BstBI	TTCGAA	1 cut(s)	1238
BstC8I	GCNNGC	3 cut(s)	231, 243, 494
BstDEI	CTNAG	8 cut(s)	75, 246, 401, 621, 647, 771, 939, 1326
BstF5I	GGATG	3 cut(s)	62, 352, 586
BstKTI	GATC	6 cut(s)	218, 291, 400, 727, 1060, 1085
BstMBI	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 242, 365, 374, 502, 557
BstNI	CCWGG	3 cut(s)	606, 986, 1167
BstSCI	CCNGG	3 cut(s)	604, 984, 1165
BstV1I	GCAGC	2 cut(s)	245, 1377
BstX2I	RGATCY	3 cut(s)	215, 397, 1057
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	3 cut(s)	215, 397, 1057
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	958
BtsCI	GGATG	3 cut(s)	62, 352, 586
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	4 cut(s)	14, 432, 915, 1032
BveI	ACCTGC	1 cut(s)	1266
Cac8I	GCNNGC	3 cut(s)	231, 243, 494
CciI	TCATGA	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	1111
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	1001
CviAII	CATG	5 cut(s)	260, 483, 840, 886, 1428
CviQI	GTAC	1 cut(s)	1001
DdeI	CTNAG	8 cut(s)	75, 246, 401, 621, 647, 771, 939, 1326
DpnI	GATC	6 cut(s)	217, 290, 399, 726, 1059, 1084
DpnII	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
DraIII	CACNNNGTG	1 cut(s)	485
Eam1104I	CTCTTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	1032
Eco130I	CCWWGG	1 cut(s)	1004
Eco47I	GGWCC	1 cut(s)	1111
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	1111
EcoRII	CCWGG	3 cut(s)	604, 984, 1165
EcoT14I	CCWWGG	1 cut(s)	1004
ErhI	CCWWGG	1 cut(s)	1004
FaeI	CATG	5 cut(s)	263, 486, 843, 889, 1431
FatI	CATG	5 cut(s)	259, 482, 839, 885, 1427
Fnu4HI	GCNGC	3 cut(s)	234, 967, 1391
FokI	GGATG	3 cut(s)	49, 359, 573
Fsp4HI	GCNGC	3 cut(s)	234, 967, 1391
FspBI	CTAG	2 cut(s)	173, 1441
GluI	GCNGC	3 cut(s)	234, 967, 1391
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	4 cut(s)	660, 761, 1008, 1362
HaeIII	GGCC	1 cut(s)	271
Hin1II	CATG	5 cut(s)	263, 486, 843, 889, 1431
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	5 cut(s)	95, 131, 632, 1210, 1405
HphI	GGTGA	3 cut(s)	440, 839, 1106
Hpy166II	GTNNAC	1 cut(s)	1030
Hpy188I	TCNGA	7 cut(s)	24, 402, 570, 622, 940, 1246, 1410
Hpy188III	TCNNGA	6 cut(s)	173, 639, 835, 886, 1271, 1283
Hpy8I	GTNNAC	1 cut(s)	1030
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	799, 1123
HpyCH4III	ACNGT	2 cut(s)	9, 475
HpyCH4V	TGCA	8 cut(s)	62, 229, 691, 754, 814, 898, 1232, 1261
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 242, 365, 374, 502, 557
HpyF3I	CTNAG	8 cut(s)	75, 246, 401, 621, 647, 771, 939, 1326
Hsp92II	CATG	5 cut(s)	263, 486, 843, 889, 1431
Kzo9I	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
LmnI	GCTCC	3 cut(s)	489, 694, 1312
Lsp1109I	GCAGC	2 cut(s)	245, 1377
LweI	GCATC	4 cut(s)	71, 78, 168, 592
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	2 cut(s)	173, 1441
MaeIII	GTNAC	5 cut(s)	428, 475, 835, 1207, 1430
MalI	GATC	6 cut(s)	217, 290, 399, 726, 1059, 1084
MbiI	CCGCTC	1 cut(s)	966
MboI	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
MboII	GAAGA	8 cut(s)	92, 104, 312, 627, 962, 1049, 1212, 1409
MflI	RGATCY	3 cut(s)	215, 397, 1057
MluCI	AATT	6 cut(s)	423, 872, 979, 1142, 1216, 1336
MlyI	GAGTC	1 cut(s)	1204
MmeI	TCCRAC	3 cut(s)	324, 522, 939
MroXI	GAANNNNTTC	1 cut(s)	1278
MseI	TTAA	2 cut(s)	39, 149
MslI	CAYNNNNRTG	2 cut(s)	465, 1025
MspA1I	CMGCKG	2 cut(s)	865, 1390
MspR9I	CCNGG	3 cut(s)	606, 986, 1167
MvaI	CCWGG	3 cut(s)	606, 986, 1167
MwoI	GCNNNNNNNGC	6 cut(s)	210, 242, 365, 374, 502, 557
NdeII	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
NlaIII	CATG	5 cut(s)	263, 486, 843, 889, 1431
NlaIV	GGNNCC	2 cut(s)	616, 1113
NmuCI	GTSAC	3 cut(s)	428, 835, 1207
NspV	TTCGAA	1 cut(s)	1238
OliI	CACNNNNGTG	1 cut(s)	1025
PaeR7I	CTCGAG	1 cut(s)	414
PagI	TCATGA	1 cut(s)	885
PdmI	GAANNNNTTC	1 cut(s)	1278
PfeI	GAWTC	4 cut(s)	95, 131, 632, 1405
PflMI	CCANNNNNTGG	3 cut(s)	611, 1079, 1400
PkrI	GCNGC	3 cut(s)	235, 968, 1392
PleI	GAGTC	1 cut(s)	1204
PpsI	GAGTC	1 cut(s)	1204
PpuMI	RGGWCCY	1 cut(s)	1111
Psp5II	RGGWCCY	1 cut(s)	1111
Psp6I	CCWGG	3 cut(s)	604, 984, 1165
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	3 cut(s)	604, 984, 1165
PspN4I	GGNNCC	2 cut(s)	616, 1113
PspPI	GGNCC	1 cut(s)	1111
PspPPI	RGGWCCY	1 cut(s)	1111
PspXI	VCTCGAGB	1 cut(s)	414
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PsuI	RGATCY	3 cut(s)	215, 397, 1057
PvuII	CAGCTG	2 cut(s)	865, 1390
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
RseI	CAYNNNNRTG	2 cut(s)	465, 1025
SaqAI	TTAA	2 cut(s)	39, 149
SatI	GCNGC	3 cut(s)	234, 967, 1391
Sau3AI	GATC	6 cut(s)	215, 288, 397, 724, 1057, 1082
Sau96I	GGNCC	1 cut(s)	1111
SchI	GAGTC	1 cut(s)	1204
ScrFI	CCNGG	3 cut(s)	606, 986, 1167
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	4 cut(s)	71, 78, 168, 592
Sfr274I	CTCGAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	1238
SinI	GGWCC	1 cut(s)	1111
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	465, 1025
SmlI	CTYRAG	3 cut(s)	54, 414, 656
SmoI	CTYRAG	3 cut(s)	54, 414, 656
Sse9I	AATT	6 cut(s)	423, 872, 979, 1142, 1216, 1336
SsiI	CCGC	5 cut(s)	211, 496, 505, 551, 966
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	2 cut(s)	173, 1441
StyD4I	CCNGG	3 cut(s)	604, 984, 1165
StyI	CCWWGG	1 cut(s)	1004
TaaI	ACNGT	2 cut(s)	9, 475
TaqI	TCGA	2 cut(s)	415, 1238
TasI	AATT	6 cut(s)	423, 872, 979, 1142, 1216, 1336
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	4 cut(s)	95, 131, 632, 1405
Tru1I	TTAA	2 cut(s)	39, 149
Tru9I	TTAA	2 cut(s)	39, 149
TscAI	CASTG	4 cut(s)	14, 439, 922, 1032
TseFI	GTSAC	3 cut(s)	428, 835, 1207
TseI	GCWGC	2 cut(s)	233, 1390
Tsp45I	GTSAC	3 cut(s)	428, 835, 1207
TspDTI	ATGAA	4 cut(s)	120, 692, 1008, 1050
TspRI	CASTG	4 cut(s)	14, 439, 922, 1032
Van91I	CCANNNNNTGG	3 cut(s)	611, 1079, 1400
VpaK11BI	GGWCC	1 cut(s)	1111
XapI	RAATTY	2 cut(s)	872, 1336
XbaI	TCTAGA	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	1278
XspI	CTAG	2 cut(s)	173, 1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.