Rh3BG300600

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002893
Physical Location & Seq
Reverse (-)
30184555 .. 30187330
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG300600.1

Sequence Viewer

Length: 1449 bp
ATGGCACAGTGGGGTGTTCGTCGGAGAGTTGTGTTCCTTAAAGAAAATAATCCTCAAGTTGCATCCAGCATCACTAAGGAAGAAGAGGTAGAAGATTCCAAAGATGAAGTTTTAAGAGCTGTGGTAGAGGATTCAAAAGATGGAGTTTTAAGAGCTGTGAAAACTGAACCTCTAGAGATGCCAGAACCCAAAAGGAGGAAGTGCCTTGACCGCAGATCTAAAGATGTGCAGGCAGCATTGCGTGCTAAGAAAAGGCAGCATGGGTTTAGGCCAATGGAGAGAAATGAGATCATAGGAGGAAGATGGAATGTTGAGAGGTATAAGAAAGCAGAGCAAAGTCTGTTGGATGTTTTGGAGGCTAAAGAGGCAACTTTTCCCAACCCAGTTAGCAGGACAGATCTGAGATTGACAGCTCGAGGAAAAATTGGTGACACTGGGCTGATTGACCACCTACTGAAGCACATTGATGGCACAGTTACACCATGTGGGAGCAAGCGGTTTCGGCGGTGGTTTAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGGAAAGAGGCTGGGCATCATCCTTATTGGTTTCCACCAGGTTGTGGTGCCTCTGAGCATTATGATTCTTCTGGAGAACTGAGGCTACTCAAGGCAGAAGTGGATAAAATGAAAAGTGATATGCAGGAGCTGCTGGTATCCAAGAAGCAAGAGAAAGATCAAACCAATATGCTGGAGGATTTGGTGAAATGGAAAGCTCAAACTGAGGAAAGGTTGAAACTTGCTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTGGGTGAGTTCATGACATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATTTACAAATGTCATGAGTAATATGCAAGTAGAAAAGCAATACACTGCTACCAACCTTTTAGCTTCTGAGCAATGGGAAGATTGGTTGGAGAGCGGCAATGTGGATAATTTCCAGGGAAATGAACTTGTACCTTGGTTTGAGAATACCACTACCACTCCAGTGAACAATGAAGAGGAAGTTATAATCCAAGATCCCCAGTCAGCCCCACCAGATGGATCAAAGACTGGTGATAGCTCATCACAGGACCCTATTTTCACAGCGGAGGAAATGGTTGAATTGGAGAGGACGAGAGATGTGCCTAGGCTGGAATGGGAGAAGCAGACAGAACATCAAGCTAATGTGACTCCTAATTCTTCTGCTACTGCAAGTTCGAAGTCAGATGTTGATAACCTGCATTTGTTTCAGGAAATGTTTCAGGAGTTGTTTAGCTGGAAATCTCAAATGGAGCAGAAAATGACTGAGTTATCAAATTCTGTGAGTGCCATCAAGCAAACATCAAAAGTATCTACTCCAGCCCTTCAGCTGCCAGAAGATGGGAATCTGATTATGGACTATTATCCATGTTACAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

55.39

Weight (kDa)

5.27

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 101 - 183 9.6e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1055
Acc36I ACCTGC 1 cut(s) 1272
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 3 cut(s) 611, 1085, 1406
AccBSI CCGCTC 1 cut(s) 966
AciI CCGC 6 cut(s) 211, 496, 505, 551, 966, 1133
AclWI GGATC 2 cut(s) 1058, 1096
AcsI RAATTY 2 cut(s) 872, 1342
AcuI CTGAAG 2 cut(s) 476, 1376
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 4 cut(s) 195, 611, 1085, 1406
AgsI TTSAA 3 cut(s) 135, 784, 1148
AjnI CCWGG 2 cut(s) 604, 984
AleI CACNNNNGTG 1 cut(s) 1031
AlwI GGATC 2 cut(s) 1058, 1096
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 4 cut(s) 233, 256, 697, 1396
ApoI RAATTY 2 cut(s) 872, 1342
Asp700I GAANNNNTTC 1 cut(s) 1284
AspA2I CCTAGG 1 cut(s) 1172
AspS9I GGNCC 1 cut(s) 1117
AsuHPI GGTGA 4 cut(s) 440, 763, 839, 1112
AsuII TTCGAA 1 cut(s) 1244
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 1117
AvrII CCTAGG 1 cut(s) 1172
BanI GGYRCC 1 cut(s) 614
BbvI GCAGC 4 cut(s) 245, 268, 684, 1383
BccI CCATC 6 cut(s) 134, 297, 461, 1079, 1364, 1400
BcgI CGANNNNNNTGC 2 cut(s) 1150, 1184
BciT130I CCWGG 2 cut(s) 606, 986
BciVI GTATCC 1 cut(s) 715
BfaI CTAG 3 cut(s) 173, 1173, 1447
BfuAI ACCTGC 1 cut(s) 1272
BfuI GTATCC 1 cut(s) 715
BglII AGATCT 2 cut(s) 215, 397
BisI GCNGC 5 cut(s) 234, 257, 698, 967, 1397
BlnI CCTAGG 1 cut(s) 1172
BlsI GCNGC 5 cut(s) 235, 258, 699, 968, 1398
Bme1390I CCNGG 2 cut(s) 606, 986
Bme18I GGWCC 1 cut(s) 1117
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 1117
BmiI GGNNCC 2 cut(s) 616, 1119
BmrFI CCNGG 2 cut(s) 606, 986
BmrI ACTGGG 3 cut(s) 377, 444, 1063
BmsI GCATC 4 cut(s) 71, 78, 168, 592
BmuI ACTGGG 3 cut(s) 377, 444, 1063
BpmI CTGGAG 4 cut(s) 660, 761, 1014, 1368
Bpu14I TTCGAA 1 cut(s) 1244
BpuEI CTTGAG 2 cut(s) 39, 641
BsaBI GATNNNNATC 1 cut(s) 1410
BsaJI CCNNGG 3 cut(s) 985, 1004, 1172
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 611, 1085, 1406
Bse1I ACTGG 6 cut(s) 383, 439, 561, 1031, 1069, 1102
Bse3DI GCAATG 3 cut(s) 236, 950, 976
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 2 cut(s) 606, 986
BseDI CCNNGG 3 cut(s) 985, 1004, 1172
BseGI GGATG 3 cut(s) 62, 352, 586
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 4 cut(s) 195, 611, 1085, 1406
BseMI GCAATG 3 cut(s) 236, 950, 976
BseMII CTCAG 6 cut(s) 392, 612, 638, 762, 930, 1323
BseNI ACTGG 6 cut(s) 383, 439, 561, 1031, 1069, 1102
BseXI GCAGC 4 cut(s) 245, 268, 684, 1383
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 414
BslI CCNNNNNNNGG 4 cut(s) 195, 611, 1085, 1406
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 414
Bsp119I TTCGAA 1 cut(s) 1244
Bsp143I GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
BspACI CCGC 6 cut(s) 211, 496, 505, 551, 966, 1133
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 6 cut(s) 393, 613, 639, 763, 931, 1324
BspHI TCATGA 2 cut(s) 834, 885
BspLI GGNNCC 2 cut(s) 616, 1119
BspMI ACCTGC 1 cut(s) 1272
BspPI GGATC 2 cut(s) 1058, 1096
BspT104I TTCGAA 1 cut(s) 1244
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 966
BsrDI GCAATG 3 cut(s) 236, 950, 976
BsrI ACTGG 6 cut(s) 383, 439, 561, 1031, 1069, 1102
BssECI CCNNGG 3 cut(s) 985, 1004, 1172
BssMI GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
BssT1I CCWWGG 2 cut(s) 1004, 1172
Bst2UI CCWGG 2 cut(s) 606, 986
Bst4CI ACNGT 2 cut(s) 9, 475
Bst6I CTCTTC 2 cut(s) 78, 1038
BstAPI GCANNNNNTGC 2 cut(s) 242, 697
BstBI TTCGAA 1 cut(s) 1244
BstC8I GCNNGC 3 cut(s) 231, 243, 494
BstDEI CTNAG 8 cut(s) 75, 246, 401, 621, 647, 771, 939, 1332
BstF5I GGATG 3 cut(s) 62, 352, 586
BstKTI GATC 6 cut(s) 218, 291, 400, 727, 1066, 1091
BstMBI GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
BstMWI GCNNNNNNNGC 6 cut(s) 210, 242, 365, 502, 557, 697
BstNI CCWGG 2 cut(s) 606, 986
BstSCI CCNGG 2 cut(s) 604, 984
BstV1I GCAGC 4 cut(s) 245, 268, 684, 1383
BstX2I RGATCY 3 cut(s) 215, 397, 1063
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 3 cut(s) 215, 397, 1063
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 3 cut(s) 62, 352, 586
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 14, 432, 915, 1038
BveI ACCTGC 1 cut(s) 1272
Cac8I GCNNGC 3 cut(s) 231, 243, 494
CaiI CAGNNNCTG 1 cut(s) 697
CciI TCATGA 2 cut(s) 834, 885
Cfr13I GGNCC 1 cut(s) 1117
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 1001
CviAII CATG 6 cut(s) 260, 483, 835, 840, 886, 1434
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 8 cut(s) 75, 246, 401, 621, 647, 771, 939, 1332
DpnI GATC 6 cut(s) 217, 290, 399, 726, 1065, 1090
DpnII GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 2 cut(s) 78, 1038
EarI CTCTTC 2 cut(s) 78, 1038
Eco130I CCWWGG 2 cut(s) 1004, 1172
Eco47I GGWCC 1 cut(s) 1117
Eco57I CTGAAG 2 cut(s) 476, 1376
Eco88I CYCGRG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 1117
EcoRII CCWGG 2 cut(s) 604, 984
EcoT14I CCWWGG 2 cut(s) 1004, 1172
ErhI CCWWGG 2 cut(s) 1004, 1172
FaeI CATG 6 cut(s) 263, 486, 838, 843, 889, 1437
FatI CATG 6 cut(s) 259, 482, 834, 839, 885, 1433
Fnu4HI GCNGC 5 cut(s) 234, 257, 698, 967, 1397
FokI GGATG 3 cut(s) 49, 359, 573
Fsp4HI GCNGC 5 cut(s) 234, 257, 698, 967, 1397
FspBI CTAG 3 cut(s) 173, 1173, 1447
GluI GCNGC 5 cut(s) 234, 257, 698, 967, 1397
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 4 cut(s) 660, 761, 1014, 1368
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 6 cut(s) 263, 486, 838, 843, 889, 1437
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 5 cut(s) 95, 131, 632, 1216, 1411
HphI GGTGA 4 cut(s) 440, 763, 839, 1112
Hpy166II GTNNAC 1 cut(s) 1036
Hpy188I TCNGA 7 cut(s) 24, 402, 570, 622, 940, 1252, 1416
Hpy188III TCNNGA 6 cut(s) 173, 639, 835, 886, 1277, 1289
Hpy8I GTNNAC 1 cut(s) 1036
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 799, 1400
HpyCH4III ACNGT 2 cut(s) 9, 475
HpyCH4V TGCA 7 cut(s) 62, 229, 691, 814, 898, 1238, 1267
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 242, 365, 502, 557, 697
HpyF3I CTNAG 8 cut(s) 75, 246, 401, 621, 647, 771, 939, 1332
Hsp92II CATG 6 cut(s) 263, 486, 838, 843, 889, 1437
Kzo9I GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
LmnI GCTCC 3 cut(s) 489, 694, 1318
Lsp1109I GCAGC 4 cut(s) 245, 268, 684, 1383
LweI GCATC 4 cut(s) 71, 78, 168, 592
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 3 cut(s) 173, 1173, 1447
MaeIII GTNAC 4 cut(s) 428, 475, 1213, 1436
MalI GATC 6 cut(s) 217, 290, 399, 726, 1065, 1090
MbiI CCGCTC 1 cut(s) 966
MboI GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
MboII GAAGA 9 cut(s) 92, 95, 104, 312, 627, 962, 1055, 1218, 1415
MflI RGATCY 3 cut(s) 215, 397, 1063
MluCI AATT 6 cut(s) 423, 872, 979, 1148, 1222, 1342
MlyI GAGTC 1 cut(s) 1210
MmeI TCCRAC 3 cut(s) 324, 522, 939
MroXI GAANNNNTTC 1 cut(s) 1284
MseI TTAA 4 cut(s) 39, 113, 149, 513
MslI CAYNNNNRTG 2 cut(s) 465, 1031
MspA1I CMGCKG 3 cut(s) 865, 1133, 1396
MspR9I CCNGG 2 cut(s) 606, 986
MvaI CCWGG 2 cut(s) 606, 986
MwoI GCNNNNNNNGC 6 cut(s) 210, 242, 365, 502, 557, 697
NdeII GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
NlaIII CATG 6 cut(s) 263, 486, 838, 843, 889, 1437
NlaIV GGNNCC 2 cut(s) 616, 1119
NmuCI GTSAC 2 cut(s) 428, 1213
NspV TTCGAA 1 cut(s) 1244
OliI CACNNNNGTG 1 cut(s) 1031
PaeR7I CTCGAG 1 cut(s) 414
PagI TCATGA 2 cut(s) 834, 885
PdmI GAANNNNTTC 1 cut(s) 1284
PfeI GAWTC 4 cut(s) 95, 131, 632, 1411
PflMI CCANNNNNTGG 3 cut(s) 611, 1085, 1406
PkrI GCNGC 5 cut(s) 235, 258, 699, 968, 1398
PleI GAGTC 1 cut(s) 1210
PpsI GAGTC 1 cut(s) 1210
PpuMI RGGWCCY 1 cut(s) 1117
PsiI TTATAA 1 cut(s) 1055
Psp5II RGGWCCY 1 cut(s) 1117
Psp6I CCWGG 2 cut(s) 604, 984
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 2 cut(s) 604, 984
PspN4I GGNNCC 2 cut(s) 616, 1119
PspPI GGNCC 1 cut(s) 1117
PspPPI RGGWCCY 1 cut(s) 1117
PspXI VCTCGAGB 1 cut(s) 414
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 3 cut(s) 215, 397, 1063
PvuII CAGCTG 2 cut(s) 865, 1396
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
RseI CAYNNNNRTG 2 cut(s) 465, 1031
SaqAI TTAA 4 cut(s) 39, 113, 149, 513
SatI GCNGC 5 cut(s) 234, 257, 698, 967, 1397
Sau3AI GATC 6 cut(s) 215, 288, 397, 724, 1063, 1088
Sau96I GGNCC 1 cut(s) 1117
SchI GAGTC 1 cut(s) 1210
ScrFI CCNGG 2 cut(s) 606, 986
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 4 cut(s) 71, 78, 168, 592
Sfr274I CTCGAG 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 1244
SinI GGWCC 1 cut(s) 1117
SlaI CTCGAG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 465, 1031
SmlI CTYRAG 3 cut(s) 54, 414, 656
SmoI CTYRAG 3 cut(s) 54, 414, 656
Sse9I AATT 6 cut(s) 423, 872, 979, 1148, 1222, 1342
SsiI CCGC 6 cut(s) 211, 496, 505, 551, 966, 1133
SspI AATATT 1 cut(s) 536
SspMI CTAG 3 cut(s) 173, 1173, 1447
StyD4I CCNGG 2 cut(s) 604, 984
StyI CCWWGG 2 cut(s) 1004, 1172
TaaI ACNGT 2 cut(s) 9, 475
TaqI TCGA 2 cut(s) 415, 1244
TasI AATT 6 cut(s) 423, 872, 979, 1148, 1222, 1342
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 4 cut(s) 95, 131, 632, 1411
Tru1I TTAA 4 cut(s) 39, 113, 149, 513
Tru9I TTAA 4 cut(s) 39, 113, 149, 513
TscAI CASTG 4 cut(s) 14, 439, 922, 1038
TseFI GTSAC 2 cut(s) 428, 1213
TseI GCWGC 4 cut(s) 233, 256, 697, 1396
Tsp45I GTSAC 2 cut(s) 428, 1213
TspDTI ATGAA 5 cut(s) 120, 692, 823, 1008, 1056
TspRI CASTG 4 cut(s) 14, 439, 922, 1038
Van91I CCANNNNNTGG 3 cut(s) 611, 1085, 1406
VpaK11BI GGWCC 1 cut(s) 1117
XapI RAATTY 2 cut(s) 872, 1342
XbaI TCTAGA 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 414
XmaJI CCTAGG 1 cut(s) 1172
XmnI GAANNNNTTC 1 cut(s) 1284
XspI CTAG 3 cut(s) 173, 1173, 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.