Rh3DG294300

Protein DYAD-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002893
Physical Location & Seq
Reverse (-)
30570554 .. 30575088
4535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG294300.1

Sequence Viewer

Length: 1155 bp
ATGGCACAGTGGGGTGTTCGTCGGAGAGTTGTGTTCCTTAAAGAAAATAATCCTCAAGTTGCATCCAGCATCACTAAGGAAGAAAAGGTAGAAGATTCCAAAGATGAAGTTGTAAGAGCTGTGGTAGAGGATTCAAAAGATGAAGTTTTAAGAGCTGTGAAAACTGAACCTCTAGAGATGCCAGAACCCAAAAGGAGGAAGTGCCTTGACCGCAGATCTAAAGATGTGCAGGCAGCATTGCGTGCTAAGAAAAGGCAACATGGGTTTAGGCCAATGGAGAGAAATGAGATCATAGGAGGAAGATGGAATGTTGAGAGGTATAAGAAAGCAGAGCAAAGTCTGTTGGATGTTTTGGAGGCTAAAGAGGCAACTTTTGCCAACCCAGTTAGCAGGACAGATCTGAGATTGACAGCTCGAGGAAAAATTGGTGACACTGGACTGATTGACCACCTACTGAAGCACATTGATGGCACAGTTACACCATGTGGGAGCAAGCGGTTTCGGCGGTGGTTCAACCACAATGGAATAATGGAATATTGGTTGGAGAGTGCGGAACTGGCTGACATTCGGAAAGAGGCTGGGCATCATCCTTATTGGTTTCCACCAGGTTGTGGTGCCTCTGAGCATTATGATTCTTCTGGAGAACTGAGGCTACTCAAGGCAGAAGTGGATAAAATGAAAAGTGATATGCAGGAGCTACTGGTATCCAAGAAGCAAGAGAAAGATCAAACCAATATGCTGGAGGATTTGGTGCAATGGAAAGCTCAAACTGAGGAAAGGTTGAAACTTGCTTTAGGTTCTTGGAAGGGTATGCAGGACAAGTTGGGTGAGTTCGTGACATGGAAAGCTTCTGTTGAGCAACAGCTGGTGGAATTTACAAATGTCATGAGTGATATGCAAGTAGAAAAGCAATACACTGCTACCAACCTTTTAGCTTCTGAGCGATGGGAAGATTGGTTGGAGAGCGGCAATGTGGATAATTTCCAGGGAAATGAACTTGTACCTTGGTTTGAGAATACCACTCCAGTGAACAATGAAGAGGAAGTTCTAATCCAAGATCCCCAGTCAGCCCCACCAGATGGATCAAAGACTGGTGATAGCTCAACACAGGACCCTATTTTCACAGCGAAGGAAATGGTTGAATTGGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

44.19

Weight (kDa)

5.47

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 101 - 183 3.8e-24 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AccB7I CCANNNNNTGG 2 cut(s) 611, 1079
AccBSI CCGCTC 1 cut(s) 966
AciI CCGC 5 cut(s) 211, 496, 505, 551, 966
AclWI GGATC 2 cut(s) 1052, 1090
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 3 cut(s) 195, 611, 1079
AgsI TTSAA 4 cut(s) 135, 514, 784, 1142
AjnI CCWGG 2 cut(s) 604, 984
AleI CACNNNNGTG 1 cut(s) 1025
AluBI AGCT 9 cut(s) 119, 155, 413, 697, 764, 848, 865, 935, 1101
AluI AGCT 9 cut(s) 119, 155, 413, 697, 764, 848, 865, 935, 1101
AlwI GGATC 2 cut(s) 1052, 1090
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 872
AspS9I GGNCC 1 cut(s) 1111
AsuHPI GGTGA 3 cut(s) 440, 839, 1106
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 614
BbvI GCAGC 1 cut(s) 245
BccI CCATC 4 cut(s) 297, 461, 939, 1073
BciT130I CCWGG 2 cut(s) 606, 986
BciVI GTATCC 1 cut(s) 715
BfaI CTAG 1 cut(s) 173
BfuI GTATCC 1 cut(s) 715
BglII AGATCT 2 cut(s) 215, 397
BisI GCNGC 2 cut(s) 234, 967
BlsI GCNGC 2 cut(s) 235, 968
Bme1390I CCNGG 2 cut(s) 606, 986
Bme18I GGWCC 1 cut(s) 1111
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 1111
BmiI GGNNCC 2 cut(s) 616, 1113
BmrFI CCNGG 2 cut(s) 606, 986
BmrI ACTGGG 2 cut(s) 377, 1057
BmsI GCATC 4 cut(s) 71, 78, 168, 592
BmuI ACTGGG 2 cut(s) 377, 1057
BpmI CTGGAG 3 cut(s) 660, 761, 1008
BpuEI CTTGAG 2 cut(s) 39, 641
BsaJI CCNNGG 2 cut(s) 985, 1004
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 611, 1079
Bse1I ACTGG 7 cut(s) 383, 439, 561, 705, 1025, 1063, 1096
Bse3DI GCAATG 3 cut(s) 236, 761, 976
BseBI CCWGG 2 cut(s) 606, 986
BseDI CCNNGG 2 cut(s) 985, 1004
BseGI GGATG 3 cut(s) 62, 352, 586
BseLI CCNNNNNNNGG 3 cut(s) 195, 611, 1079
BseMI GCAATG 3 cut(s) 236, 761, 976
BseMII CTCAG 5 cut(s) 392, 612, 638, 762, 930
BseNI ACTGG 7 cut(s) 383, 439, 561, 705, 1025, 1063, 1096
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 414
BslI CCNNNNNNNGG 3 cut(s) 195, 611, 1079
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 414
Bsp143I GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BspACI CCGC 5 cut(s) 211, 496, 505, 551, 966
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 5 cut(s) 393, 613, 639, 763, 931
BspHI TCATGA 1 cut(s) 885
BspLI GGNNCC 2 cut(s) 616, 1113
BspPI GGATC 2 cut(s) 1052, 1090
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 966
BsrDI GCAATG 3 cut(s) 236, 761, 976
BsrI ACTGG 7 cut(s) 383, 439, 561, 705, 1025, 1063, 1096
BssECI CCNNGG 2 cut(s) 985, 1004
BssMI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BssT1I CCWWGG 1 cut(s) 1004
Bst2UI CCWGG 2 cut(s) 606, 986
Bst4CI ACNGT 2 cut(s) 9, 475
Bst6I CTCTTC 1 cut(s) 1032
BstAPI GCANNNNNTGC 2 cut(s) 242, 374
BstC8I GCNNGC 3 cut(s) 231, 243, 494
BstDEI CTNAG 7 cut(s) 75, 246, 401, 621, 647, 771, 939
BstF5I GGATG 3 cut(s) 62, 352, 586
BstKTI GATC 6 cut(s) 218, 291, 400, 727, 1060, 1085
BstMBI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
BstMWI GCNNNNNNNGC 6 cut(s) 210, 242, 365, 374, 502, 557
BstNI CCWGG 2 cut(s) 606, 986
BstSCI CCNGG 2 cut(s) 604, 984
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 3 cut(s) 215, 397, 1057
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 3 cut(s) 215, 397, 1057
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 958
BtsCI GGATG 3 cut(s) 62, 352, 586
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 14, 432, 915, 1032
Cac8I GCNNGC 3 cut(s) 231, 243, 494
CciI TCATGA 1 cut(s) 885
Cfr13I GGNCC 1 cut(s) 1111
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 1001
CviAII CATG 4 cut(s) 260, 483, 840, 886
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 7 cut(s) 75, 246, 401, 621, 647, 771, 939
DpnI GATC 6 cut(s) 217, 290, 399, 726, 1059, 1084
DpnII GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 1032
Eco130I CCWWGG 1 cut(s) 1004
Eco47I GGWCC 1 cut(s) 1111
Eco57I CTGAAG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 1111
EcoRII CCWGG 2 cut(s) 604, 984
EcoT14I CCWWGG 1 cut(s) 1004
ErhI CCWWGG 1 cut(s) 1004
FaeI CATG 4 cut(s) 263, 486, 843, 889
FatI CATG 4 cut(s) 259, 482, 839, 885
Fnu4HI GCNGC 2 cut(s) 234, 967
FokI GGATG 3 cut(s) 49, 359, 573
Fsp4HI GCNGC 2 cut(s) 234, 967
FspBI CTAG 1 cut(s) 173
GluI GCNGC 2 cut(s) 234, 967
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 3 cut(s) 660, 761, 1008
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 4 cut(s) 263, 486, 843, 889
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 3 cut(s) 95, 131, 632
HphI GGTGA 3 cut(s) 440, 839, 1106
Hpy166II GTNNAC 1 cut(s) 1030
Hpy188I TCNGA 5 cut(s) 24, 402, 570, 622, 940
Hpy188III TCNNGA 4 cut(s) 173, 639, 835, 886
Hpy8I GTNNAC 1 cut(s) 1030
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 799, 1123
HpyCH4III ACNGT 2 cut(s) 9, 475
HpyCH4V TGCA 6 cut(s) 62, 229, 691, 754, 814, 898
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 242, 365, 374, 502, 557
HpyF3I CTNAG 7 cut(s) 75, 246, 401, 621, 647, 771, 939
Hsp92II CATG 4 cut(s) 263, 486, 843, 889
Kzo9I GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
LmnI GCTCC 2 cut(s) 489, 694
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 4 cut(s) 71, 78, 168, 592
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 3 cut(s) 428, 475, 835
MalI GATC 6 cut(s) 217, 290, 399, 726, 1059, 1084
MbiI CCGCTC 1 cut(s) 966
MboI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
MboII GAAGA 6 cut(s) 92, 104, 312, 627, 962, 1049
MflI RGATCY 3 cut(s) 215, 397, 1057
MluCI AATT 4 cut(s) 423, 872, 979, 1142
MmeI TCCRAC 3 cut(s) 324, 522, 939
MseI TTAA 2 cut(s) 39, 149
MslI CAYNNNNRTG 2 cut(s) 465, 1025
MspA1I CMGCKG 1 cut(s) 865
MspR9I CCNGG 2 cut(s) 606, 986
MvaI CCWGG 2 cut(s) 606, 986
MwoI GCNNNNNNNGC 6 cut(s) 210, 242, 365, 374, 502, 557
NdeII GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
NlaIII CATG 4 cut(s) 263, 486, 843, 889
NlaIV GGNNCC 2 cut(s) 616, 1113
NmuCI GTSAC 2 cut(s) 428, 835
OliI CACNNNNGTG 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 414
PagI TCATGA 1 cut(s) 885
PfeI GAWTC 3 cut(s) 95, 131, 632
PflMI CCANNNNNTGG 2 cut(s) 611, 1079
PkrI GCNGC 2 cut(s) 235, 968
PpuMI RGGWCCY 1 cut(s) 1111
Psp5II RGGWCCY 1 cut(s) 1111
Psp6I CCWGG 2 cut(s) 604, 984
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 2 cut(s) 604, 984
PspN4I GGNNCC 2 cut(s) 616, 1113
PspPI GGNCC 1 cut(s) 1111
PspPPI RGGWCCY 1 cut(s) 1111
PspXI VCTCGAGB 1 cut(s) 414
PsrI GAACNNNNNNTAC 2 cut(s) 636, 668
PsuI RGATCY 3 cut(s) 215, 397, 1057
PvuII CAGCTG 1 cut(s) 865
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
RseI CAYNNNNRTG 2 cut(s) 465, 1025
SaqAI TTAA 2 cut(s) 39, 149
SatI GCNGC 2 cut(s) 234, 967
Sau3AI GATC 6 cut(s) 215, 288, 397, 724, 1057, 1082
Sau96I GGNCC 1 cut(s) 1111
ScrFI CCNGG 2 cut(s) 606, 986
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 4 cut(s) 71, 78, 168, 592
Sfr274I CTCGAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 1111
SlaI CTCGAG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 465, 1025
SmlI CTYRAG 3 cut(s) 54, 414, 656
SmoI CTYRAG 3 cut(s) 54, 414, 656
Sse9I AATT 4 cut(s) 423, 872, 979, 1142
SsiI CCGC 5 cut(s) 211, 496, 505, 551, 966
SspI AATATT 1 cut(s) 536
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 604, 984
StyI CCWWGG 1 cut(s) 1004
TaaI ACNGT 2 cut(s) 9, 475
TaqI TCGA 1 cut(s) 415
TasI AATT 4 cut(s) 423, 872, 979, 1142
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 3 cut(s) 95, 131, 632
Tru1I TTAA 2 cut(s) 39, 149
Tru9I TTAA 2 cut(s) 39, 149
TscAI CASTG 4 cut(s) 14, 439, 922, 1032
TseFI GTSAC 2 cut(s) 428, 835
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 428, 835
TspDTI ATGAA 5 cut(s) 120, 156, 692, 1008, 1050
TspRI CASTG 4 cut(s) 14, 439, 922, 1032
Van91I CCANNNNNTGG 2 cut(s) 611, 1079
VpaK11BI GGWCC 1 cut(s) 1111
XapI RAATTY 1 cut(s) 872
XbaI TCTAGA 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 414
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.