AT5G25550

Leucine-rich repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
8893989 .. 8895914
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25550.1

Sequence Viewer

Length: 1302 bp
ATGAGGATTTATCAACCAACCTTATTAATATTCACCACCGTCGTCTTACTCTCCATCTCCGCCGTCGCTCCTGGTGGCTCCCGGCAACTTTTGTACACCCGAGACGACCCTATAACCATACCTCCGTACCTAATATTCGAAAACGTACGGCTCGAAAGAGCTTACGTGGCGTTACAAGCGTGGAAACGTGCCATGATCTCTGACCCGTGGAATCTGACAACTAACTGGTTTGGATCACGTGTGTGCGACTACAACGGTGTAGTATGCTCCGAATCTCTCGACGACCCTTTGGTTAAAACTGTCTCCGGTGTTGATCTAAACCAGGGAGATATCGCTGGTCATCTCCCTGAAGAGCTTGGCCTCTTAACCGATATTGCTCTGTTTCACGTTAACTCAAACCGGTTCTGTGGTACACTCCCGGTCGGGTTTTCGCAGTTGAGTCTCCTTTTCGAACTTGATCTTAGTAATAACCGGTTCGCTGGTAAATTCCCGGAAGTGGTAATCGGTTTACCGAAATTAAAGTATCTTGATCTCCGGTACAACGAGTTTGAAGGTGAATTACCAGAATCTTTGTTCGATAAAGATCTTGACGCTTTATTCCTGAATAGTAACCGGTTTAGAAGTAAAATCCCGGTTAACATGGGAAATTCACCGGTATCGGTTCTAGTTCTAGCCTCAAACCGGTTTGAAGGATGTATACCGCCGAGTTTCGGTAAAATGGGTAAGACTCTAAACGAGATCATTCTTATGGATAACGGTTTACAATCTTGTATACCTAATGACATGGGATTACTTCAAAACGTTACGGTTTTGGACATTAGTTATAACTGGTTGGTCGGAGAGTTACCTAAGTCGATGGGTCAGATGGAGAATCTTGAGGTGTTGAACGTTGAACGTAACATGCTCTCCGGTTTAATACCGGATGAGCTATGTTCGCTTGAGAAGCTAAGAGATTTTAGATACGGGTCTAACTATTTCACCGGAGAACCAGCCACGTGTCGCTATCTAGAGAATTATAATTATACGATGAATTGCTTCAAGGACGTGAGGGACCAAAGATCGATGATGGAGTGTAAGATGTTTTTGTCGAAACCTGTAGATTGTGACTCTTTCAAGTGTAGTCCTGGCTCTTCGTGTTTTTCTCCTCCTCCGAGTCAAATATCACCATCTTCGCAACCATTGGCACCGGCGCCATCTCCTACTTCACCACCATTGTCAACACCGCCTCCGGCTAGACCATGTCCGCCGGTATACTCACCACCTCCACCACCACCATTGTCACTGGCGCCGTCTATGAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

433

Amino Acids

48.09

Weight (kDa)

4.93

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 129 - 182 5.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012723)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 825, 1017
AccB1I GGYRCC 3 cut(s) 1183, 1189, 1285
AccI GTMKAC 3 cut(s) 697, 772, 1251
AciI CCGC 4 cut(s) 60, 701, 1223, 1244
AclI AACGTT 2 cut(s) 801, 888
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 2 cut(s) 485, 646
AcuI CTGAAG 1 cut(s) 369
AcvI CACGTG 2 cut(s) 239, 996
AcyI GRCGYC 2 cut(s) 1190, 1286
AfaI GTAC 5 cut(s) 95, 128, 147, 412, 539
AfiI CCNNNNNNNGG 3 cut(s) 496, 681, 710
AflIII ACRYGT 2 cut(s) 238, 995
AgeI ACCGGT 5 cut(s) 399, 471, 612, 652, 681
AgsI TTSAA 7 cut(s) 551, 689, 797, 886, 893, 1039, 1114
AjiI CACGTC 1 cut(s) 1045
AjnI CCWGG 3 cut(s) 70, 321, 1123
AleI CACNNNNGTG 1 cut(s) 241
AluBI AGCT 4 cut(s) 161, 355, 928, 946
AluI AGCT 4 cut(s) 161, 355, 928, 946
Alw26I GTCTC 3 cut(s) 96, 307, 446
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 358
ApoI RAATTY 2 cut(s) 485, 646
AseI ATTAAT 1 cut(s) 26
AsiGI ACCGGT 5 cut(s) 399, 471, 612, 652, 681
Asp700I GAANNNNTTC 1 cut(s) 1034
AspLEI GCGC 2 cut(s) 1192, 1288
AspS9I GGNCC 1 cut(s) 1051
AsuC2I CCSGG 4 cut(s) 82, 419, 491, 632
AsuHPI GGTGA 7 cut(s) 25, 566, 642, 970, 1155, 1197, 1248
AsuII TTCGAA 2 cut(s) 138, 450
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 1051
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BanI GGYRCC 3 cut(s) 1183, 1189, 1285
BarI GAAGNNNNNNTAC 4 cut(s) 543, 575, 681, 713
BbrPI CACGTG 2 cut(s) 239, 996
BccI CCATC 6 cut(s) 62, 850, 859, 1060, 1174, 1201
BceAI ACGGC 3 cut(s) 47, 164, 1273
BciT130I CCWGG 3 cut(s) 72, 323, 1125
BcnI CCSGG 4 cut(s) 82, 419, 491, 632
BcoDI GTCTC 3 cut(s) 96, 307, 446
BfaI CTAG 4 cut(s) 665, 671, 1007, 1233
BfmI CTRYAG 1 cut(s) 1095
BfoI RGCGCY 2 cut(s) 1193, 1289
BglII AGATCT 1 cut(s) 583
Bme1390I CCNGG 7 cut(s) 72, 82, 323, 419, 491, 632, 1125
Bme18I GGWCC 1 cut(s) 1051
BmeT110I CYCGRG 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 1045
BmgT120I GGNCC 1 cut(s) 1051
BmiI GGNNCC 5 cut(s) 79, 1052, 1185, 1191, 1287
BmrFI CCNGG 7 cut(s) 72, 82, 323, 419, 491, 632, 1125
Bpu14I TTCGAA 2 cut(s) 138, 450
BpuEI CTTGAG 2 cut(s) 896, 959
BpuMI CCSGG 4 cut(s) 82, 419, 491, 632
Bsa29I ATCGAT 1 cut(s) 1061
BsaAI YACGTR 3 cut(s) 166, 239, 996
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 2 cut(s) 1190, 1286
BsaJI CCNNGG 2 cut(s) 206, 322
BsaXI ACNNNNNCTCC 6 cut(s) 106, 136, 890, 920, 1210, 1240
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 681, 710
Bse118I RCCGGY 7 cut(s) 399, 471, 612, 652, 681, 1186, 1246
Bse1I ACTGG 3 cut(s) 230, 833, 1287
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 3 cut(s) 72, 323, 1125
BseCI ATCGAT 1 cut(s) 1061
BseDI CCNNGG 2 cut(s) 206, 322
BseGI GGATG 2 cut(s) 698, 928
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 3 cut(s) 496, 681, 710
BseNI ACTGG 3 cut(s) 230, 833, 1287
BseRI GAGGAG 2 cut(s) 1134, 1137
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 1 cut(s) 360
BshNI GGYRCC 3 cut(s) 1183, 1189, 1285
BshTI ACCGGT 5 cut(s) 399, 471, 612, 652, 681
BshVI ATCGAT 1 cut(s) 1061
BsiEI CGRYCG 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 99
BsiWI CGTACG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 1064
BslI CCNNNNNNNGG 3 cut(s) 496, 681, 710
BsmAI GTCTC 3 cut(s) 96, 307, 446
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 1064
BsnI GGCC 1 cut(s) 360
BsoBI CYCGRG 1 cut(s) 99
Bsp119I TTCGAA 2 cut(s) 138, 450
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
BspACI CCGC 4 cut(s) 60, 701, 1223, 1244
BspANI GGCC 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 1061
BspLI GGNNCC 5 cut(s) 79, 1052, 1185, 1191, 1287
BspPI GGATC 1 cut(s) 241
BspQI GCTCTTC 2 cut(s) 345, 1135
BspT104I TTCGAA 2 cut(s) 138, 450
BspT107I GGYRCC 3 cut(s) 1183, 1189, 1285
BsrFI RCCGGY 7 cut(s) 399, 471, 612, 652, 681, 1186, 1246
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 3 cut(s) 230, 833, 1287
BssAI RCCGGY 7 cut(s) 399, 471, 612, 652, 681, 1186, 1246
BssECI CCNNGG 2 cut(s) 206, 322
BssMI GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
BssNAI GTATAC 3 cut(s) 698, 773, 1252
BssNI GRCGYC 2 cut(s) 1190, 1286
Bst1107I GTATAC 3 cut(s) 698, 773, 1252
Bst2UI CCWGG 3 cut(s) 72, 323, 1125
Bst4CI ACNGT 5 cut(s) 40, 257, 301, 758, 808
Bst6I CTCTTC 2 cut(s) 345, 1135
BstACI GRCGYC 2 cut(s) 1190, 1286
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 3 cut(s) 166, 239, 996
BstBI TTCGAA 2 cut(s) 138, 450
BstDEI CTNAG 3 cut(s) 461, 849, 947
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 698, 928
BstH2I RGCGCY 2 cut(s) 1193, 1289
BstHHI GCGC 2 cut(s) 1192, 1288
BstKTI GATC 8 cut(s) 198, 236, 316, 460, 532, 586, 741, 1061
BstMAI GTCTC 3 cut(s) 96, 307, 446
BstMBI GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 934, 943
BstNI CCWGG 3 cut(s) 72, 323, 1125
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 7 cut(s) 70, 80, 321, 417, 489, 630, 1123
BstSFI CTRYAG 1 cut(s) 1095
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BstZ17I GTATAC 3 cut(s) 698, 773, 1252
Bsu15I ATCGAT 1 cut(s) 1061
BsuRI GGCC 1 cut(s) 360
BsuTUI ATCGAT 1 cut(s) 1061
BtgI CCRYGG 1 cut(s) 206
BtrI CACGTC 1 cut(s) 1045
BtsCI GGATG 2 cut(s) 698, 928
BtsIMutI CAGTG 1 cut(s) 1280
CfoI GCGC 2 cut(s) 1192, 1288
Cfr10I RCCGGY 7 cut(s) 399, 471, 612, 652, 681, 1186, 1246
Cfr13I GGNCC 1 cut(s) 1051
ClaI ATCGAT 1 cut(s) 1061
CseI GACGC 1 cut(s) 599
Csp6I GTAC 5 cut(s) 94, 127, 146, 411, 538
CspAI ACCGGT 5 cut(s) 399, 471, 612, 652, 681
CspCI CAANNNNNGTGG 2 cut(s) 1257, 1292
CviAII CATG 5 cut(s) 193, 640, 784, 901, 1239
CviQI GTAC 5 cut(s) 94, 127, 146, 411, 538
DdeI CTNAG 3 cut(s) 461, 849, 947
DinI GGCGCC 2 cut(s) 1191, 1287
DpnI GATC 8 cut(s) 197, 235, 315, 459, 531, 585, 740, 1060
DpnII GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
Eam1104I CTCTTC 2 cut(s) 345, 1135
EarI CTCTTC 2 cut(s) 345, 1135
EciI GGCGGA 2 cut(s) 49, 1233
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 369
Eco72I CACGTG 2 cut(s) 239, 996
Eco88I CYCGRG 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 70, 321, 1123
EcoRV GATATC 1 cut(s) 331
EgeI GGCGCC 2 cut(s) 1191, 1287
EheI GGCGCC 2 cut(s) 1191, 1287
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 5 cut(s) 196, 643, 787, 904, 1242
FaqI GGGAC 1 cut(s) 1064
FatI CATG 5 cut(s) 192, 639, 783, 900, 1238
FblI GTMKAC 3 cut(s) 697, 772, 1251
FokI GGATG 2 cut(s) 705, 935
FspBI CTAG 4 cut(s) 665, 671, 1007, 1233
GlaI GCGC 2 cut(s) 1191, 1287
HaeII RGCGCY 2 cut(s) 1193, 1289
HaeIII GGCC 1 cut(s) 360
HgaI GACGC 1 cut(s) 599
HhaI GCGC 2 cut(s) 1192, 1288
Hin1I GRCGYC 2 cut(s) 1190, 1286
Hin1II CATG 5 cut(s) 196, 643, 787, 904, 1242
Hin6I GCGC 2 cut(s) 1190, 1286
HinP1I GCGC 2 cut(s) 1190, 1286
HincII GTYRAC 3 cut(s) 391, 637, 1218
HindII GTYRAC 3 cut(s) 391, 637, 1218
HinfI GANTC 8 cut(s) 211, 272, 439, 566, 727, 871, 1106, 1153
HpaI GTTAAC 2 cut(s) 391, 637
HphI GGTGA 7 cut(s) 25, 566, 642, 970, 1155, 1197, 1248
Hpy188I TCNGA 6 cut(s) 202, 216, 271, 839, 864, 1152
Hpy188III TCNNGA 6 cut(s) 278, 527, 587, 601, 875, 1007
Hpy99I CGWCG 3 cut(s) 44, 68, 284
HpyAV CCTTC 2 cut(s) 545, 683
HpyCH4III ACNGT 5 cut(s) 40, 257, 301, 758, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 934, 943
HpyF3I CTNAG 3 cut(s) 461, 849, 947
Hsp92I GRCGYC 2 cut(s) 1190, 1286
Hsp92II CATG 5 cut(s) 196, 643, 787, 904, 1242
HspAI GCGC 2 cut(s) 1190, 1286
KasI GGCGCC 2 cut(s) 1189, 1285
KspAI GTTAAC 2 cut(s) 391, 637
Kzo9I GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
LguI GCTCTTC 2 cut(s) 345, 1135
LmnI GCTCC 3 cut(s) 73, 83, 272
MaeI CTAG 4 cut(s) 665, 671, 1007, 1233
MaeIII GTNAC 7 cut(s) 171, 608, 802, 843, 896, 1103, 1278
MalI GATC 8 cut(s) 197, 235, 315, 459, 531, 585, 740, 1060
MboI GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
MboII GAAGA 3 cut(s) 362, 1122, 1161
MflI RGATCY 1 cut(s) 583
MluCI AATT 7 cut(s) 485, 515, 557, 646, 1012, 1018, 1030
Mly113I GGCGCC 2 cut(s) 1190, 1286
MlyI GAGTC 4 cut(s) 448, 721, 1100, 1162
MmeI TCCRAC 1 cut(s) 817
MnlI CCTC 9 cut(s) 132, 371, 685, 871, 1041, 1155, 1158, 1236, 1272
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 7 cut(s) 26, 294, 365, 390, 518, 636, 914
MslI CAYNNNNRTG 2 cut(s) 241, 746
MspR9I CCNGG 7 cut(s) 72, 82, 323, 419, 491, 632, 1125
MvaI CCWGG 3 cut(s) 72, 323, 1125
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 934, 943
NarI GGCGCC 2 cut(s) 1190, 1286
NciI CCSGG 4 cut(s) 82, 419, 491, 632
NdeII GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
NlaIII CATG 5 cut(s) 196, 643, 787, 904, 1242
NlaIV GGNNCC 5 cut(s) 79, 1052, 1185, 1191, 1287
NmeAIII GCCGAG 1 cut(s) 729
NmuCI GTSAC 2 cut(s) 1103, 1278
NspI RCATGY 1 cut(s) 904
NspV TTCGAA 2 cut(s) 138, 450
OliI CACNNNNGTG 1 cut(s) 241
PciSI GCTCTTC 2 cut(s) 345, 1135
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 4 cut(s) 211, 272, 566, 871
Pfl23II CGTACG 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 1239
PfoI TCCNGGA 1 cut(s) 489
PinAI ACCGGT 5 cut(s) 399, 471, 612, 652, 681
PleI GAGTC 4 cut(s) 447, 721, 1100, 1161
PluTI GGCGCC 2 cut(s) 1193, 1289
PmaCI CACGTG 2 cut(s) 239, 996
PmlI CACGTG 2 cut(s) 239, 996
PpsI GAGTC 4 cut(s) 447, 721, 1100, 1161
Ppu21I YACGTR 3 cut(s) 166, 239, 996
PshBI ATTAAT 1 cut(s) 26
PsiI TTATAA 2 cut(s) 825, 1017
Psp1406I AACGTT 2 cut(s) 801, 888
Psp6I CCWGG 3 cut(s) 70, 321, 1123
PspCI CACGTG 2 cut(s) 239, 996
PspGI CCWGG 3 cut(s) 70, 321, 1123
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 5 cut(s) 79, 1052, 1185, 1191, 1287
PspPI GGNCC 1 cut(s) 1051
PsuI RGATCY 1 cut(s) 583
PsyI GACNNNGTC 1 cut(s) 1239
RsaI GTAC 5 cut(s) 95, 128, 147, 412, 539
RsaNI GTAC 5 cut(s) 94, 127, 146, 411, 538
RseI CAYNNNNRTG 2 cut(s) 241, 746
SapI GCTCTTC 2 cut(s) 345, 1135
SaqAI TTAA 7 cut(s) 26, 294, 365, 390, 518, 636, 914
Sau3AI GATC 8 cut(s) 195, 233, 313, 457, 529, 583, 738, 1058
Sau96I GGNCC 1 cut(s) 1051
SchI GAGTC 4 cut(s) 448, 721, 1100, 1162
ScrFI CCNGG 7 cut(s) 72, 82, 323, 419, 491, 632, 1125
SfcI CTRYAG 1 cut(s) 1095
SfoI GGCGCC 2 cut(s) 1191, 1287
SfuI TTCGAA 2 cut(s) 138, 450
SgrAI CRCCGGYG 1 cut(s) 1186
SinI GGWCC 1 cut(s) 1051
SmiMI CAYNNNNRTG 2 cut(s) 241, 746
SmlI CTYRAG 2 cut(s) 875, 938
SmoI CTYRAG 2 cut(s) 875, 938
Sse9I AATT 7 cut(s) 485, 515, 557, 646, 1012, 1018, 1030
SsiI CCGC 4 cut(s) 60, 701, 1223, 1244
SspDI GGCGCC 2 cut(s) 1189, 1285
SspI AATATT 2 cut(s) 30, 135
SspMI CTAG 4 cut(s) 665, 671, 1007, 1233
StyD4I CCNGG 7 cut(s) 70, 80, 321, 417, 489, 630, 1123
TaaI ACNGT 5 cut(s) 40, 257, 301, 758, 808
TaqI TCGA 8 cut(s) 138, 153, 279, 450, 576, 854, 1061, 1088
TasI AATT 7 cut(s) 485, 515, 557, 646, 1012, 1018, 1030
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 4 cut(s) 211, 272, 566, 871
Tru1I TTAA 7 cut(s) 26, 294, 365, 390, 518, 636, 914
Tru9I TTAA 7 cut(s) 26, 294, 365, 390, 518, 636, 914
TscAI CASTG 1 cut(s) 1287
TseFI GTSAC 2 cut(s) 1103, 1278
Tsp45I GTSAC 2 cut(s) 1103, 1278
TspDTI ATGAA 1 cut(s) 1043
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 1287
Tth111I GACNNNGTC 1 cut(s) 1239
VpaK11BI GGWCC 1 cut(s) 1051
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 2 cut(s) 485, 646
XbaI TCTAGA 1 cut(s) 1006
XceI RCATGY 1 cut(s) 904
XmiI GTMKAC 3 cut(s) 697, 772, 1251
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 4 cut(s) 665, 671, 1007, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.