Rh6CG530200

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012723
Physical Location & Seq
Reverse (-)
68348562 .. 68351100
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG530200.1

Sequence Viewer

Length: 1212 bp
ATGAAGAGAAACATTGATCACACTCGCATTGTTCTCATACTCTTCTTTTGCCTCAGCACTGCTACTACTGCCCAAGAACCCCATATTTTCCAGAATGCAGGCTTAACAGACTCCCACATCAAGCAAAGGCGGCTCCTTAATGACGGTTCCAGAGGTGAGACTGTCACAATGTCACCCTCGCTTATTTTTCCCAACCCGAGAATCAAGACTGCCTACATTGCCCTCCAAGCATGGAAGCAAGCCATGCTCTCAGACCCTCTGGGACACACAGCCAACTGGGTTGGATCCAATGTCTGCAACTACACTGGAGTCTTCTGTGCTGAAGCTCTCGACGACCCAACAACAGAAACAGTCGCTGGCATCGATCTAAACCATGCTGACATTGCCGGGTACCTCCCAGAAGAGCTTGGCCATCTTTCAGACATTGCATTGTTTCACGTGAACTCCAATCGTTTCTGTGGCACTGTCCCAAAGAGTTTCAGCAAGTTGAAGCTTCTTCATGAGCTTGATCTAAGTAATAACCGGTTTGCTGGGAAATTCCCTCTTGTTGTTCTTCAACTGCCAGTACTTAAATACCTTGACATTCGGTTCAATGAATTTGAAGGTAGAATTCCCAAGGAACTATTTGATAAGCATCTTGATGCCATCTTCCTCAACGACAACAGATTCGCCTATGAACTGCCACATAATTTAGGAAACTCGCCGGTCTCAGTTATTGTTCTTGCAAACAATAAGTTCCACGGATGTTTACCGGCCAGCCTTGGCAACATGTCCAAGAACTTAAACGAGCTGATCCTTACTAGAAATGGGTTGTACTCCTGTTTGCCAGAGGAAATAGGAATGCTCAAGAATCTTACTGTGTTAGATGTGAGTCATAATGGTCTTTTCGGTGAGTTGCCACACGCACTAGGTGAAATGTTGAGCTTGGAGGAGCTGAATGTGGCTCATAACAACCTTACAGGGACTATACCAGAGAGCATTTGTGGGCTTCCAAATCTGAAAAGTTTTAGCTTTGGGTACAACTTTTTCACAGGGCGCCAAGTAAAGCATGAAACCTCTGTGAGTAAGAGCCCATCAAGTGGGCAAATGGCCTTGAGCTCATTGAATCTAACGGGCACAGAAGGATTTACTGGTTCAAACAAAAACAAGAACAAAAGAAATTTGTGTGCATTGCTTTCAAGTTATCAAACAACAACTATACTCAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

403

Amino Acids

44.5

Weight (kDa)

6.73

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 74 - 106 1.8e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 272 - 336 2.4e-06 Leucine-rich repeat region
LRR_8 PF13855 284 - 337 5.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 390, 1035
AccB7I CCANNNNNTGG 1 cut(s) 1079
AciI CCGC 1 cut(s) 130
AclWI GGATC 3 cut(s) 279, 292, 787
AcoI YGGCCR 2 cut(s) 409, 753
AcsI RAATTY 4 cut(s) 536, 596, 609, 1159
AcuI CTGAAG 1 cut(s) 342
AcvI CACGTG 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 1036
AdeI CACNNNGTG 1 cut(s) 911
AfaI GTAC 4 cut(s) 392, 567, 815, 1019
AfiI CCNNNNNNNGG 1 cut(s) 1079
AflIII ACRYGT 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 7 cut(s) 490, 557, 592, 602, 1105, 1137, 1179
AluBI AGCT 9 cut(s) 326, 406, 493, 505, 790, 924, 934, 1011, 1098
AluI AGCT 9 cut(s) 326, 406, 493, 505, 790, 924, 934, 1011, 1098
Alw21I GWGCWC 1 cut(s) 1100
Alw26I GTCTC 2 cut(s) 152, 712
AlwI GGATC 3 cut(s) 279, 292, 787
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 3 cut(s) 409, 753, 1089
ApoI RAATTY 4 cut(s) 536, 596, 609, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AsiGI ACCGGT 1 cut(s) 522
Asp718I GGTACC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 1038
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 4 cut(s) 165, 167, 902, 923
AvaI CYCGRG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 1118
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 1 cut(s) 284
BanI GGYRCC 2 cut(s) 390, 1035
BanII GRGCYC 2 cut(s) 1073, 1100
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 1100
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 420, 653, 1081
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 152, 712
BfaI CTAG 2 cut(s) 801, 908
BfoI RGCGCY 1 cut(s) 1039
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 388
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 5 cut(s) 134, 148, 286, 392, 1037
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 3 cut(s) 369, 631, 643
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 830, 1114
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 1036
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 3 cut(s) 615, 739, 760
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 1 cut(s) 1079
Bse118I RCCGGY 3 cut(s) 522, 703, 751
Bse1I ACTGG 4 cut(s) 281, 310, 563, 1135
Bse3DI GCAATG 4 cut(s) 216, 381, 423, 1169
Bse8I GATNNNNATC 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 615, 739, 760
BseGI GGATG 1 cut(s) 749
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 1 cut(s) 1079
BseMI GCAATG 4 cut(s) 216, 381, 423, 1169
BseMII CTCAG 3 cut(s) 67, 264, 723
BseNI ACTGG 4 cut(s) 281, 310, 563, 1135
BseRI GAGGAG 1 cut(s) 944
BseSI GKGCMC 1 cut(s) 1118
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 411, 755, 1091
BshNI GGYRCC 2 cut(s) 390, 1035
BshTI ACCGGT 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 1100
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 4 cut(s) 387, 523, 704, 752
BslFI GGGAC 3 cut(s) 276, 452, 976
BslI CCNNNNNNNGG 1 cut(s) 1079
BsmAI GTCTC 2 cut(s) 152, 712
BsmFI GGGAC 3 cut(s) 276, 452, 976
BsmI GAATGC 2 cut(s) 100, 846
BsnI GGCC 3 cut(s) 411, 755, 1091
Bso31I GGTCTC 1 cut(s) 712
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 1073, 1100, 1118
Bsp143I GATC 5 cut(s) 16, 284, 364, 508, 792
BspACI CCGC 1 cut(s) 130
BspANI GGCC 3 cut(s) 411, 755, 1091
BspCNI CTCAG 3 cut(s) 66, 263, 722
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 5 cut(s) 134, 148, 286, 392, 1037
BspPI GGATC 3 cut(s) 279, 292, 787
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 390, 1035
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 4 cut(s) 216, 381, 423, 1169
BsrFI RCCGGY 3 cut(s) 522, 703, 751
BsrI ACTGG 4 cut(s) 281, 310, 563, 1135
BssAI RCCGGY 3 cut(s) 522, 703, 751
BssECI CCNNGG 3 cut(s) 615, 739, 760
BssMI GATC 5 cut(s) 16, 284, 364, 508, 792
BssNI GRCGYC 1 cut(s) 1036
BssT1I CCWWGG 2 cut(s) 615, 760
Bst4CI ACNGT 5 cut(s) 146, 163, 352, 466, 859
Bst6I CTCTTC 2 cut(s) 47, 396
BstACI GRCGYC 1 cut(s) 1036
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 100, 240, 358, 757
BstDEI CTNAG 4 cut(s) 53, 250, 512, 709
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 1 cut(s) 749
BstH2I RGCGCY 1 cut(s) 1039
BstHHI GCGC 1 cut(s) 1038
BstKTI GATC 5 cut(s) 19, 287, 367, 511, 795
BstMAI GTCTC 2 cut(s) 152, 712
BstMBI GATC 5 cut(s) 16, 284, 364, 508, 792
BstMWI GCNNNNNNNGC 6 cut(s) 68, 130, 218, 227, 244, 383
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 1118
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 411, 755, 1091
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 1 cut(s) 749
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 57, 303, 462
Cac8I GCNNGC 4 cut(s) 100, 240, 358, 757
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 499
CfoI GCGC 1 cut(s) 1038
Cfr10I RCCGGY 3 cut(s) 522, 703, 751
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 4 cut(s) 391, 566, 814, 1018
CspAI ACCGGT 1 cut(s) 522
CviAII CATG 6 cut(s) 231, 244, 374, 500, 769, 1049
CviQI GTAC 4 cut(s) 391, 566, 814, 1018
DdeI CTNAG 4 cut(s) 53, 250, 512, 709
DinI GGCGCC 1 cut(s) 1037
DpnI GATC 5 cut(s) 18, 286, 366, 510, 794
DpnII GATC 5 cut(s) 16, 284, 364, 508, 792
DraIII CACNNNGTG 1 cut(s) 911
EaeI YGGCCR 2 cut(s) 409, 753
Eam1104I CTCTTC 2 cut(s) 47, 396
EarI CTCTTC 2 cut(s) 47, 396
Ecl136II GAGCTC 1 cut(s) 1098
Eco130I CCWWGG 2 cut(s) 615, 760
Eco24I GRGCYC 2 cut(s) 1073, 1100
Eco31I GGTCTC 1 cut(s) 712
Eco53kI GAGCTC 1 cut(s) 1098
Eco57I CTGAAG 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 1098
EcoRI GAATTC 1 cut(s) 609
EcoT14I CCWWGG 2 cut(s) 615, 760
EcoT38I GRGCYC 2 cut(s) 1073, 1100
EgeI GGCGCC 1 cut(s) 1037
EheI GGCGCC 1 cut(s) 1037
ErhI CCWWGG 2 cut(s) 615, 760
FaeI CATG 6 cut(s) 234, 247, 377, 503, 772, 1052
FaqI GGGAC 3 cut(s) 276, 452, 976
FatI CATG 6 cut(s) 230, 243, 373, 499, 768, 1048
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 756
FriOI GRGCYC 2 cut(s) 1073, 1100
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 2 cut(s) 801, 908
GlaI GCGC 1 cut(s) 1037
GluI GCNGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 1039
HaeIII GGCC 3 cut(s) 411, 755, 1091
HapII CCGG 4 cut(s) 387, 523, 704, 752
HhaI GCGC 1 cut(s) 1038
Hin1I GRCGYC 1 cut(s) 1036
Hin1II CATG 6 cut(s) 234, 247, 377, 503, 772, 1052
Hin6I GCGC 1 cut(s) 1036
HinP1I GCGC 1 cut(s) 1036
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 7 cut(s) 110, 201, 309, 666, 850, 871, 1105
HpaII CCGG 4 cut(s) 387, 523, 704, 752
HphI GGTGA 4 cut(s) 165, 167, 902, 923
Hpy166II GTNNAC 2 cut(s) 442, 749
Hpy188I TCNGA 3 cut(s) 253, 421, 999
Hpy188III TCNNGA 7 cut(s) 91, 150, 205, 329, 500, 638, 847
Hpy8I GTNNAC 2 cut(s) 442, 749
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 596, 1115
HpyCH4III ACNGT 5 cut(s) 146, 163, 352, 466, 859
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 5 cut(s) 98, 297, 428, 725, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 130, 218, 227, 244, 383
HpyF3I CTNAG 4 cut(s) 53, 250, 512, 709
HpySE526I ACGT 1 cut(s) 438
Hsp92I GRCGYC 1 cut(s) 1036
Hsp92II CATG 6 cut(s) 234, 247, 377, 503, 772, 1052
HspAI GCGC 1 cut(s) 1036
KasI GGCGCC 1 cut(s) 1035
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 284, 364, 508, 792
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 2 cut(s) 138, 931
LweI GCATC 3 cut(s) 369, 631, 643
MaeI CTAG 2 cut(s) 801, 908
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 163, 171
MalI GATC 5 cut(s) 18, 286, 366, 510, 794
MboI GATC 5 cut(s) 16, 284, 364, 508, 792
MboII GAAGA 7 cut(s) 16, 34, 304, 413, 488, 545, 640
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 3 cut(s) 1073, 1100, 1118
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 5 cut(s) 536, 596, 609, 688, 1159
MluNI TGGCCA 1 cut(s) 411
Mly113I GGCGCC 1 cut(s) 1036
MlyI GAGTC 3 cut(s) 104, 318, 880
MmeI TCCRAC 1 cut(s) 262
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 4 cut(s) 104, 138, 570, 782
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 4 cut(s) 387, 523, 704, 752
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 2 cut(s) 100, 846
MwoI GCNNNNNNNGC 6 cut(s) 68, 130, 218, 227, 244, 383
NarI GGCGCC 1 cut(s) 1036
NciI CCSGG 1 cut(s) 388
NdeII GATC 5 cut(s) 16, 284, 364, 508, 792
NlaIII CATG 6 cut(s) 234, 247, 377, 503, 772, 1052
NlaIV GGNNCC 5 cut(s) 134, 148, 286, 392, 1037
NmuCI GTSAC 2 cut(s) 163, 171
NspI RCATGY 1 cut(s) 772
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 2 cut(s) 100, 846
PfeI GAWTC 4 cut(s) 201, 666, 850, 1105
PflMI CCANNNNNTGG 1 cut(s) 1079
PinAI ACCGGT 1 cut(s) 522
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 3 cut(s) 104, 317, 879
PluTI GGCGCC 1 cut(s) 1039
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 3 cut(s) 104, 317, 879
Ppu21I YACGTR 1 cut(s) 439
PscI ACATGT 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 1100
PspCI CACGTG 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 5 cut(s) 134, 148, 286, 392, 1037
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 4 cut(s) 392, 567, 815, 1019
RsaNI GTAC 4 cut(s) 391, 566, 814, 1018
RseI CAYNNNNRTG 1 cut(s) 639
SacI GAGCTC 1 cut(s) 1100
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 4 cut(s) 104, 138, 570, 782
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 5 cut(s) 16, 284, 364, 508, 792
ScaI AGTACT 1 cut(s) 567
SchI GAGTC 3 cut(s) 104, 318, 880
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 3 cut(s) 1073, 1100, 1118
SfaNI GCATC 3 cut(s) 369, 631, 643
SfoI GGCGCC 1 cut(s) 1037
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 2 cut(s) 845, 1093
SmoI CTYRAG 2 cut(s) 845, 1093
Sse9I AATT 5 cut(s) 536, 596, 609, 688, 1159
SsiI CCGC 1 cut(s) 130
SspDI GGCGCC 1 cut(s) 1035
SspI AATATT 1 cut(s) 1207
SspMI CTAG 2 cut(s) 801, 908
SstI GAGCTC 1 cut(s) 1100
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 2 cut(s) 615, 760
TaaI ACNGT 5 cut(s) 146, 163, 352, 466, 859
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 330, 363
TasI AATT 5 cut(s) 536, 596, 609, 688, 1159
TatI WGTACW 2 cut(s) 565, 813
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 4 cut(s) 201, 666, 850, 1105
Tru1I TTAA 4 cut(s) 104, 138, 570, 782
Tru9I TTAA 4 cut(s) 104, 138, 570, 782
TscAI CASTG 3 cut(s) 64, 310, 469
TseFI GTSAC 2 cut(s) 163, 171
Tsp45I GTSAC 2 cut(s) 163, 171
TspDTI ATGAA 5 cut(s) 17, 488, 609, 690, 1065
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 3 cut(s) 64, 310, 469
Van91I CCANNNNNTGG 1 cut(s) 1079
XapI RAATTY 4 cut(s) 536, 596, 609, 1159
XceI RCATGY 1 cut(s) 772
XspI CTAG 2 cut(s) 801, 908
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.