pycom15g10230

leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
6694357 .. 6696846
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10230.1

Sequence Viewer

Length: 2280 bp
ATGAAGAGAAGAAACATTCAAATTTTTCTACTCCCCATTTTCCTCGTACCGATCTTTTTCCTAGGTGCCACCACTGGCGAAGAGCTTCCGATTTCGCACAATGCCGGCTTGAGAGACTCGTCGCACACCTTGCATTACAAGCAAAGGCAGCTCTTGTATTACACTGACCACCATGGGTCACGAGGTGTGACTGTGACAGCCGCAGGCTCCCTTGTTTTTGAAAACCCTAGACTCAGAAGTGCCTACACTGCCCTCCAAGCATGGAAGCGAGCCATGGTCTCGGATCCTCGGGATCAAACATCCAACTGGGTTGGATCCGATGTATGCAAATACACTGGAGTCTTCTGCGCCCAAGCTCCAGACGACCCATCAGTCCAAACTGTTGCTGGCATTGATCTAAACCATGCTGACATTGCAGGGTTTCTCCCGGAAGAGCTTGGTCTTCTCCTGGATATTGCATTGTTTCACATCAACTCAAATCGTTTCTGCGGCAAAGTCCCGAAGAGTTTCAACAAGTTGAAGCTGCTTTTCGAGCTTGATCTCAGCAACAACCGCTTTGCTGGGGAATTCCCTGATGTTGTTCTTCAGCTGCCAGCACTAAAATTTCTGGACCTGCGATTCAATGAGTTTGAAGGTAAAGTCCCCAAGGAACTGTTCGATAAGGACCTTGATGCAATCTTCATCAACCACAACAGATTTTCCTTCCAATTGCCAGATAATTTTGGGAAATCGCCGGTCTCAGTCATTGTTCTTGCCAACAATAACTTCCACGGATGTGTACCTGCCAGCCTTGGCAAGATGTCCAAGAATTTAAATGAATTGGTGCTTGCTAACAACGGGTTCCACTCGTGTTTGCCAAAGGAGATAGGGATGCTGACGAATGTGAGACTGTTTGATGTAAGCCATAACCGGATTGTGGGAGAGTTGCCGAAGGAAATAGTTGAAATGGAAAGCTTGGAGCAGCTGAATGTGGCTCATAACATGCTCAGAGGGACTATACCAGAAGGGGTGTCTGGAGGACAGAGAACCTTTTTGCAATGCAAATTGGCTTTGTCTAAAAAAGTTGATTGTAGTTCTTTTGGATGTCATCCTTTTGTTCCTCCTTCGCTACCATCACCACCACTGCCTTCACCATCACTATCACCGCCTACACCATCACAACCACCGCATCCGCCATCACCATCACTGCCTCCACCATCTCTATCACCTCCGCCTCCGCCATCTCTATCACCTCCGCCACCATCGTCACCACCACCGCGTCCACCATCTCCATTGCCGCCACCACCTCCACCATCACCGCCACCGCATCCGCCATCTCCATTGCCTCCCCCGCCATCTCCATACCTTTCGCCAAAATTACCATTACCACCTCCACCATCACCGCCACCGCATCTGCCATCTCCATTGCCTCCCCTGCCATCTCCATCCCCACCATTACCATCACCACCTCCACCATCGACACTGCCGCATCCACCATATTCATCGCCTCCTCCGCCATCTCCATCACCTCCGCCTCCACCATCACCAATACCGTATCCGCTGTCTCCGTCGCCTCCTCCACCATCTCCATCCCCTTCTCCGCCATTACCATCACCTCCGCCCCCACCATCACCTCCGCCTCCACCATCACCATCACCGCATCCGCCATCTCCATCGCCTCCTCCACCGTCTCCATCCCCTTCGCCGTCATTACCATCACCTCCGCCCCCATTACCATCACCACCTCCACCATCACCACCATTGCCTCCGCCATCTCCATCACCGCCTCCACCATCCCTATCACCTCCTCCACCATCTCCATCGCCTCCTCCACTATCTCCATCACTTCCGCCGCCATCACCATCATCACCACTGCCTCCGCCATCTCCATCACCGCCTCCACCATCCCTATCACCTCCTCCACCATCTCCATCGCCTCCTCCACTATTTCCATCACTTCCGCCGCCATCACCATCACCACCACTGCCTCCTCCTCCTCTTCCTCCACCTCCGCCTCCACCATCCTCACCTCCTTGCCTTCCCTCTCCACCACCCCCTCCACCATGCCCTCTTCAGAATTCACCCCCACCTCCACTATCTTCTCCCCTACCACCACCACATTCTCTTATATCACCACCTCCACCACTTCCTTCACCTCCTTCACCTCCATCCCCACCACCATGTGTGCCATCTTCTCTGCCTCCGCCTTCACCTTCAGCACCAACTCCAGCATATGATGGCCTGTTACCACCAATTAAAGAAACCTCCCACCCTTCACCTTCACCACAACCGTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

760

Amino Acids

79.75

Weight (kDa)

7.65

Isoelectric Point (pI)

120.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 83 - 116 6.5e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012723)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
Acc36I ACCTGC 2 cut(s) 621, 790
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 1258
AclWI GGATC 5 cut(s) 278, 291, 300, 309, 322
AcsI RAATTY 5 cut(s) 21, 566, 602, 808, 2056
AcuI CTGAAG 3 cut(s) 569, 2036, 2178
AdeI CACNNNGTG 2 cut(s) 185, 2162
AfaI GTAC 2 cut(s) 48, 780
AfiI CCNNNNNNNGG 1 cut(s) 916
AgsI TTSAA 7 cut(s) 20, 221, 511, 520, 622, 632, 944
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 4 cut(s) 638, 670, 749, 781
AleI CACNNNNGTG 1 cut(s) 774
AluBI AGCT 9 cut(s) 85, 151, 356, 436, 523, 535, 589, 954, 964
AluI AGCT 9 cut(s) 85, 151, 356, 436, 523, 535, 589, 954, 964
Alw26I GTCTC 6 cut(s) 108, 283, 742, 880, 1548, 1674
AlwI GGATC 5 cut(s) 278, 291, 300, 309, 322
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 1 cut(s) 2218
ApeKI GCWGC 4 cut(s) 148, 523, 589, 961
ApoI RAATTY 5 cut(s) 21, 566, 602, 808, 2056
Asp700I GAANNNNTTC 2 cut(s) 84, 506
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 610, 664
AsuC2I CCSGG 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 2 cut(s) 610, 664
AvrII CCTAGG 1 cut(s) 61
BamHI GGATCC 2 cut(s) 283, 314
BanI GGYRCC 1 cut(s) 65
BauI CACGAG 2 cut(s) 180, 847
BbsI GAAGAC 2 cut(s) 334, 434
BbvI GCAGC 4 cut(s) 160, 510, 576, 973
BceAI ACGGC 1 cut(s) 1669
BciT130I CCWGG 1 cut(s) 449
BciVI GTATCC 1 cut(s) 1545
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 6 cut(s) 108, 283, 742, 880, 1548, 1674
BfaI CTAG 2 cut(s) 62, 228
BfuAI ACCTGC 2 cut(s) 621, 790
BfuI GTATCC 1 cut(s) 1545
BlnI CCTAGG 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 428, 449
Bme18I GGWCC 2 cut(s) 610, 664
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 2 cut(s) 610, 664
BmiI GGNNCC 5 cut(s) 67, 208, 285, 316, 842
BmrFI CCNGG 2 cut(s) 428, 449
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 7 cut(s) 661, 861, 1177, 1315, 1399, 1477, 1648
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 334, 434
BpmI CTGGAG 4 cut(s) 342, 357, 1035, 2190
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 428
BsaI GGTCTC 2 cut(s) 283, 742
BsaJI CCNNGG 7 cut(s) 61, 172, 273, 287, 645, 769, 790
BsaWI WCCGGW 1 cut(s) 909
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse118I RCCGGY 2 cut(s) 104, 733
Bse1I ACTGG 3 cut(s) 79, 311, 340
Bse3DI GCAATG 6 cut(s) 411, 1043, 1271, 1319, 1403, 1739
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 7 cut(s) 61, 172, 273, 287, 645, 769, 790
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMI GCAATG 6 cut(s) 411, 1043, 1271, 1319, 1403, 1739
BseMII CTCAG 4 cut(s) 247, 556, 753, 1000
BseNI ACTGG 3 cut(s) 79, 311, 340
BseXI GCAGC 4 cut(s) 160, 510, 576, 973
BseYI CCCAGC 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 1258
BshFI GGCC 1 cut(s) 2220
BshNI GGYRCC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 4 cut(s) 105, 428, 734, 910
BslFI GGGAC 3 cut(s) 482, 626, 1006
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 6 cut(s) 108, 283, 742, 880, 1548, 1674
BsmBI CGTCTC 1 cut(s) 1674
BsmFI GGGAC 3 cut(s) 482, 626, 1006
BsnI GGCC 1 cut(s) 2220
Bso31I GGTCTC 2 cut(s) 283, 742
BsoBI CYCGRG 1 cut(s) 288
Bsp143I GATC 6 cut(s) 51, 283, 292, 314, 394, 538
Bsp19I CCATGG 2 cut(s) 172, 273
BspANI GGCC 1 cut(s) 2220
BspCNI CTCAG 4 cut(s) 246, 555, 752, 999
BspFNI CGCG 1 cut(s) 1258
BspLI GGNNCC 5 cut(s) 67, 208, 285, 316, 842
BspMI ACCTGC 2 cut(s) 621, 790
BspPI GGATC 5 cut(s) 278, 291, 300, 309, 322
BspQI GCTCTTC 2 cut(s) 75, 426
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 2 cut(s) 283, 742
BsrDI GCAATG 6 cut(s) 411, 1043, 1271, 1319, 1403, 1739
BsrFI RCCGGY 2 cut(s) 104, 733
BsrI ACTGG 3 cut(s) 79, 311, 340
BssAI RCCGGY 2 cut(s) 104, 733
BssECI CCNNGG 7 cut(s) 61, 172, 273, 287, 645, 769, 790
BssMI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
BssSI CACGAG 2 cut(s) 180, 847
BssT1I CCWWGG 5 cut(s) 61, 172, 273, 645, 790
Bst2BI CACGAG 2 cut(s) 180, 847
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 7 cut(s) 193, 382, 654, 891, 1533, 1668, 2271
Bst6I CTCTTC 5 cut(s) 75, 426, 497, 1983, 2055
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 7 cut(s) 106, 205, 270, 388, 594, 787, 828
BstDEI CTNAG 4 cut(s) 233, 542, 739, 986
BstDSI CCRYGG 3 cut(s) 172, 273, 769
BstFNI CGCG 1 cut(s) 1258
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 6 cut(s) 54, 286, 295, 317, 397, 541
BstMAI GTCTC 6 cut(s) 108, 283, 742, 880, 1548, 1674
BstMBI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 985
BstSCI CCNGG 2 cut(s) 426, 447
BstUI CGCG 1 cut(s) 1258
BstV1I GCAGC 4 cut(s) 160, 510, 576, 973
BstV2I GAAGAC 2 cut(s) 334, 434
BstX2I RGATCY 2 cut(s) 283, 314
BstYI RGATCY 2 cut(s) 283, 314
BsuI GTATCC 1 cut(s) 1545
BsuRI GGCC 1 cut(s) 2220
BtgI CCRYGG 3 cut(s) 172, 273, 769
BtgZI GCGATG 4 cut(s) 1467, 1638, 1785, 1896
BtsI GCAGTG 6 cut(s) 246, 1121, 1184, 1460, 1850, 1961
BtsIMutI CAGTG 9 cut(s) 72, 162, 246, 333, 1121, 1184, 1460, 1850, 1961
BveI ACCTGC 2 cut(s) 621, 790
Cac8I GCNNGC 7 cut(s) 106, 205, 270, 388, 594, 787, 828
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 2 cut(s) 104, 733
Cfr13I GGNCC 2 cut(s) 610, 664
CseI GACGC 1 cut(s) 1247
Csp6I GTAC 2 cut(s) 47, 779
CviAII CATG 7 cut(s) 173, 261, 274, 404, 982, 2043, 2160
CviQI GTAC 2 cut(s) 47, 779
DdeI CTNAG 4 cut(s) 233, 542, 739, 986
DpnI GATC 6 cut(s) 53, 285, 294, 316, 396, 540
DpnII GATC 6 cut(s) 51, 283, 292, 314, 394, 538
DraI TTTAAA 1 cut(s) 813
DraIII CACNNNGTG 2 cut(s) 185, 2162
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
Eam1104I CTCTTC 5 cut(s) 75, 426, 497, 1983, 2055
EarI CTCTTC 5 cut(s) 75, 426, 497, 1983, 2055
Eco130I CCWWGG 5 cut(s) 61, 172, 273, 645, 790
Eco31I GGTCTC 2 cut(s) 283, 742
Eco47I GGWCC 2 cut(s) 610, 664
Eco57I CTGAAG 3 cut(s) 569, 2036, 2178
Eco88I CYCGRG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 664
EcoRI GAATTC 2 cut(s) 566, 2056
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 5 cut(s) 61, 172, 273, 645, 790
ErhI CCWWGG 5 cut(s) 61, 172, 273, 645, 790
Esp3I CGTCTC 1 cut(s) 1674
FaeI CATG 7 cut(s) 176, 264, 277, 407, 985, 2046, 2163
FaqI GGGAC 3 cut(s) 482, 626, 1006
FatI CATG 7 cut(s) 172, 260, 273, 403, 981, 2042, 2159
FauI CCCGC 1 cut(s) 1338
FauNDI CATATG 1 cut(s) 2212
FspBI CTAG 2 cut(s) 62, 228
GlaI GCGC 1 cut(s) 349
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 4 cut(s) 342, 357, 1035, 2190
HaeIII GGCC 1 cut(s) 2220
HapII CCGG 4 cut(s) 105, 428, 734, 910
HgaI GACGC 1 cut(s) 1247
HhaI GCGC 1 cut(s) 350
Hin1II CATG 7 cut(s) 176, 264, 277, 407, 985, 2046, 2163
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 952
HinfI GANTC 4 cut(s) 116, 231, 339, 618
HpaII CCGG 4 cut(s) 105, 428, 734, 910
Hpy166II GTNNAC 2 cut(s) 779, 1262
Hpy188I TCNGA 6 cut(s) 90, 236, 283, 319, 989, 2055
Hpy188III TCNNGA 6 cut(s) 180, 290, 359, 499, 608, 1014
Hpy8I GTNNAC 2 cut(s) 779, 1262
Hpy99I CGWCG 2 cut(s) 124, 1552
HpyCH4III ACNGT 7 cut(s) 193, 382, 654, 891, 1533, 1668, 2271
HpyCH4V TGCA 7 cut(s) 133, 327, 416, 458, 674, 1036, 1041
HpyF3I CTNAG 4 cut(s) 233, 542, 739, 986
Hsp92II CATG 7 cut(s) 176, 264, 277, 407, 985, 2046, 2163
HspAI GCGC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 6 cut(s) 51, 283, 292, 314, 394, 538
LguI GCTCTTC 2 cut(s) 75, 426
LmnI GCTCC 3 cut(s) 212, 361, 958
Lsp1109I GCAGC 4 cut(s) 160, 510, 576, 973
LweI GCATC 7 cut(s) 661, 861, 1177, 1315, 1399, 1477, 1648
MaeI CTAG 2 cut(s) 62, 228
MaeIII GTNAC 5 cut(s) 177, 187, 193, 1245, 2223
MalI GATC 6 cut(s) 53, 285, 294, 316, 396, 540
MboI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 2 cut(s) 283, 314
MlyI GAGTC 3 cut(s) 110, 225, 348
MmeI TCCRAC 2 cut(s) 292, 327
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 84, 506
MseI TTAA 2 cut(s) 812, 2235
MslI CAYNNNNRTG 2 cut(s) 774, 2158
MspA1I CMGCKG 3 cut(s) 589, 964, 1540
MspI CCGG 4 cut(s) 105, 428, 734, 910
MspR9I CCNGG 2 cut(s) 428, 449
MunI CAATTG 1 cut(s) 707
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 1258
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 428
NcoI CCATGG 2 cut(s) 172, 273
NdeI CATATG 1 cut(s) 2212
NdeII GATC 6 cut(s) 51, 283, 292, 314, 394, 538
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 7 cut(s) 176, 264, 277, 407, 985, 2046, 2163
NlaIV GGNNCC 5 cut(s) 67, 208, 285, 316, 842
NmuCI GTSAC 4 cut(s) 177, 187, 193, 1245
NspI RCATGY 1 cut(s) 985
OliI CACNNNNGTG 1 cut(s) 774
PciSI GCTCTTC 2 cut(s) 75, 426
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 84, 506
PfeI GAWTC 1 cut(s) 618
PfoI TCCNGGA 2 cut(s) 426, 447
PleI GAGTC 3 cut(s) 110, 225, 347
PpsI GAGTC 3 cut(s) 110, 225, 347
PpuMI RGGWCCY 1 cut(s) 664
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 5 cut(s) 67, 208, 285, 316, 842
PspPI GGNCC 2 cut(s) 610, 664
PspPPI RGGWCCY 1 cut(s) 664
PsuI RGATCY 2 cut(s) 283, 314
PvuII CAGCTG 2 cut(s) 589, 964
RsaI GTAC 2 cut(s) 48, 780
RsaNI GTAC 2 cut(s) 47, 779
RseI CAYNNNNRTG 2 cut(s) 774, 2158
SapI GCTCTTC 2 cut(s) 75, 426
SaqAI TTAA 2 cut(s) 812, 2235
Sau3AI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
Sau96I GGNCC 2 cut(s) 610, 664
SchI GAGTC 3 cut(s) 110, 225, 348
ScrFI CCNGG 2 cut(s) 428, 449
SfaNI GCATC 7 cut(s) 661, 861, 1177, 1315, 1399, 1477, 1648
SinI GGWCC 2 cut(s) 610, 664
SmiI ATTTAAAT 1 cut(s) 813
SmiMI CAYNNNNRTG 2 cut(s) 774, 2158
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SspMI CTAG 2 cut(s) 62, 228
StyD4I CCNGG 2 cut(s) 426, 447
StyI CCWWGG 5 cut(s) 61, 172, 273, 645, 790
SwaI ATTTAAAT 1 cut(s) 813
TaaI ACNGT 7 cut(s) 193, 382, 654, 891, 1533, 1668, 2271
TaqI TCGA 3 cut(s) 531, 657, 1457
TauI GCSGC 6 cut(s) 203, 492, 1279, 1468, 1834, 1945
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 2 cut(s) 812, 2235
Tru9I TTAA 2 cut(s) 812, 2235
TscAI CASTG 9 cut(s) 79, 169, 253, 340, 1128, 1191, 1467, 1857, 1968
TseFI GTSAC 4 cut(s) 177, 187, 193, 1245
TseI GCWGC 4 cut(s) 148, 523, 589, 961
Tsp45I GTSAC 4 cut(s) 177, 187, 193, 1245
TspDTI ATGAA 4 cut(s) 17, 670, 831, 1470
TspGWI ACGGA 2 cut(s) 786, 1536
TspRI CASTG 9 cut(s) 79, 169, 253, 340, 1128, 1191, 1467, 1857, 1968
VpaK11BI GGWCC 2 cut(s) 610, 664
XapI RAATTY 5 cut(s) 21, 566, 602, 808, 2056
XceI RCATGY 1 cut(s) 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmaJI CCTAGG 1 cut(s) 61
XmnI GAANNNNTTC 2 cut(s) 84, 506
XspI CTAG 2 cut(s) 62, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.