Rroxscaffold_7G00156630

leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
458284 .. 459870
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156630.1

Sequence Viewer

Length: 1587 bp
ATGAAGAGAAAGATTGATCACACTCGCATTGTTCTCATACTCTTCTTTTGCCTCAGCACTGCTACTACTGCCCAAGAACCCCATATTTTCCACAATGCAGGCTTAACAGACTCCCACATCAAGCAAAGGCGGCTCCTTAATGACGGTCCCAGAGGTGAGACTGTCACGATGTCACCCTCGCTTATTTTTCCCAACCCGAGAATCAAGACTGCCTACATTGCCCTCCAAGCATGGAAGCAAGCCATGCTCTCAGACCCTCTGGGACACACAGCCAACTGGGTTGGATCCAATGTCTGCAACTACACTGGAGTCTTCTGTGCTGAAGCTCTCGACGACCCAACAATAGAAACAGTCGCTGGCATCGATCTAAACCATGCTGACATTGCCGGGTACCTCCCAGAAGAGCTTGGCCATCTTTCAGACATTGCATTGTTTCACGTGAACTCCAATCGTTTCTGTGGCACTGTCCCAAAGAGTTTCTGCAAGTTGAAGCTTCTTCATGAGCTTGATCTAAGTAATAACCGGTTTGCTGGGAAATTCCCTCTTGTTGTTCTTCAACTGCCGGTACTTAAATACCTTGACATTCGGTTCAATGAATTTGAAGGTAGAATTCCCACGGAACTATTTGATAAGCATCTTGATGCCATCTTCCTCAACGACAACAGATTCGCCTATGAACTGCCACATAATTTAGGAAACTCGCCGGTCTCAGTTATTGTTCTTGCAAACAATAAGTTCCACGGATGTTTACCGGCCAGCCTTGGCAACATGTCCAAGAACTTAAACGAGCTGATCCTTACTAGAAATGGGTTGTACTCCTGTTTGCCGGAGGACATAGGAATGCTCAAGAATCTTACTGTGTTAGATGTGAGTCATAATGGTCTTTTCGGTGAGTTGCCACACGCACTAGGTGAAATGTTGAGCTTGGAGGAGCTGAATGTGGCTCATAACAACCTTAAAGGGACTATACCAGAGAGCATTTGTGGGCTTCCAAATCTGAAAAATTTTAGGTTTGGGTACAACTTTTTCACAGGTGAGCCACCAGTGTGTTTAGATTTGGAAGAGTTTGATGATAGCAGGAATTGTTTGCGGCGTAGGCCAAAGCAGAGATCCATGTTGCAATGTAAATTATTTTTGTCCAAGTCTGTTGATTGTAGTTCTTTTCGATGCCAACCATCACCGCCACCACCATCTTCTCCCCCGCCGCCGTCACAACCACAGCATTCTCCTCCACCGCCACCACCTTCTCCACCGCCGCCATCCCCACCGCCTCCAGTATACTGCATTCACGCTCCACCTCCCCCTCCACCAAATTTCCTGCCACCACCTCCACCAAGTCCTCACTACAATTCACCACCACACCCGTCATCGTCTCCACCAAACTCTCCTCCACCCCCAAGTCCGCCACAATCTCCCCCACCCCCATCTCCGCCAACTTCTCCCCCATCACCATCTTATCCATCCCCACCTCCACCACCAATTTACTCTCCACCACCCCCTTTACCTCCTTGTAAAGAACCTTCTCCACCTCCGTCTCCACCACCATGTCTGGAATATTCTCCACCTCCACCACCTACTCCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

528

Amino Acids

57.76

Weight (kDa)

6.54

Isoelectric Point (pI)

81.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 74 - 106 2.5e-06 Leucine rich repeat N-terminal domain
LRR_8 PF13855 284 - 335 3.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012723)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 1278
AclWI GGATC 4 cut(s) 279, 292, 787, 1104
AcoI YGGCCR 2 cut(s) 409, 753
AcsI RAATTY 5 cut(s) 536, 596, 609, 1003, 1312
AcuI CTGAAG 1 cut(s) 342
AcvI CACGTG 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 911
AfaI GTAC 4 cut(s) 392, 567, 815, 1019
AflIII ACRYGT 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 4 cut(s) 490, 557, 592, 602
AleI CACNNNNGTG 1 cut(s) 1045
AluBI AGCT 7 cut(s) 326, 406, 493, 505, 790, 924, 934
AluI AGCT 7 cut(s) 326, 406, 493, 505, 790, 924, 934
Alw26I GTCTC 4 cut(s) 152, 712, 1377, 1539
AlwI GGATC 4 cut(s) 279, 292, 787, 1104
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 3 cut(s) 409, 753, 1097
ApoI RAATTY 5 cut(s) 536, 596, 609, 1003, 1312
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AsiGI ACCGGT 1 cut(s) 522
Asp718I GGTACC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 8 cut(s) 165, 167, 902, 923, 1046, 1170, 1344, 1440
AvaI CYCGRG 1 cut(s) 196
AvaII GGWCC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 1504, 1536
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 9 cut(s) 420, 653, 1183, 1198, 1267, 1432, 1453, 1459, 1468
BceAI ACGGC 1 cut(s) 1192
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 4 cut(s) 152, 712, 1377, 1539
BfaI CTAG 2 cut(s) 801, 908
BisI GCNGC 4 cut(s) 131, 1091, 1205, 1256
BlsI GCNGC 4 cut(s) 132, 1092, 1206, 1257
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 4 cut(s) 134, 148, 286, 392
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 4 cut(s) 369, 631, 643, 1157
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 3 cut(s) 327, 1257, 1563
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 3 cut(s) 615, 739, 760
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse118I RCCGGY 4 cut(s) 522, 562, 703, 751
Bse1I ACTGG 4 cut(s) 281, 310, 1043, 1274
Bse3DI GCAATG 4 cut(s) 216, 381, 423, 1127
Bse8I GATNNNNATC 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 615, 739, 760
BseGI GGATG 3 cut(s) 749, 1259, 1460
BseJI GATNNNNATC 1 cut(s) 633
BseMI GCAATG 4 cut(s) 216, 381, 423, 1127
BseMII CTCAG 3 cut(s) 67, 264, 723
BseNI ACTGG 4 cut(s) 281, 310, 1043, 1274
BseRI GAGGAG 3 cut(s) 944, 1218, 1377
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 411, 755, 1099
BshNI GGYRCC 1 cut(s) 390
BshTI ACCGGT 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 6 cut(s) 387, 523, 563, 704, 752, 827
BslFI GGGAC 4 cut(s) 132, 276, 452, 976
BsmAI GTCTC 4 cut(s) 152, 712, 1377, 1539
BsmBI CGTCTC 2 cut(s) 1377, 1539
BsmFI GGGAC 4 cut(s) 132, 276, 452, 976
BsmI GAATGC 3 cut(s) 846, 1222, 1284
BsnI GGCC 3 cut(s) 411, 755, 1099
Bso31I GGTCTC 1 cut(s) 712
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
BspANI GGCC 3 cut(s) 411, 755, 1099
BspCNI CTCAG 3 cut(s) 66, 263, 722
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 4 cut(s) 134, 148, 286, 392
BspPI GGATC 4 cut(s) 279, 292, 787, 1104
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 4 cut(s) 216, 381, 423, 1127
BsrFI RCCGGY 4 cut(s) 522, 562, 703, 751
BsrI ACTGG 4 cut(s) 281, 310, 1043, 1274
BssAI RCCGGY 4 cut(s) 522, 562, 703, 751
BssECI CCNNGG 3 cut(s) 615, 739, 760
BssMI GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
BssNAI GTATAC 1 cut(s) 1279
BssT1I CCWWGG 1 cut(s) 760
Bst1107I GTATAC 1 cut(s) 1279
Bst4CI ACNGT 5 cut(s) 146, 163, 352, 466, 859
Bst6I CTCTTC 3 cut(s) 47, 396, 1056
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 100, 240, 358, 757
BstDEI CTNAG 4 cut(s) 53, 250, 512, 709
BstDSI CCRYGG 2 cut(s) 615, 739
BstF5I GGATG 3 cut(s) 749, 1259, 1460
BstKTI GATC 6 cut(s) 19, 287, 367, 511, 795, 1112
BstMAI GTCTC 4 cut(s) 152, 712, 1377, 1539
BstMBI GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
BstMWI GCNNNNNNNGC 7 cut(s) 68, 130, 218, 227, 244, 383, 1096
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 284, 1109
BstYI RGATCY 2 cut(s) 284, 1109
BstZ17I GTATAC 1 cut(s) 1279
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 411, 755, 1099
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 2 cut(s) 615, 739
BtsCI GGATG 3 cut(s) 749, 1259, 1460
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 4 cut(s) 57, 303, 462, 1050
Cac8I GCNNGC 4 cut(s) 100, 240, 358, 757
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 4 cut(s) 522, 562, 703, 751
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 4 cut(s) 391, 566, 814, 1018
CspAI ACCGGT 1 cut(s) 522
CviAII CATG 8 cut(s) 231, 244, 374, 500, 769, 1114, 1545, 1584
CviQI GTAC 4 cut(s) 391, 566, 814, 1018
DdeI CTNAG 4 cut(s) 53, 250, 512, 709
DpnI GATC 6 cut(s) 18, 286, 366, 510, 794, 1111
DpnII GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
DraIII CACNNNGTG 1 cut(s) 911
EaeI YGGCCR 2 cut(s) 409, 753
Eam1104I CTCTTC 3 cut(s) 47, 396, 1056
EarI CTCTTC 3 cut(s) 47, 396, 1056
EciI GGCGGA 2 cut(s) 1392, 1419
Eco130I CCWWGG 1 cut(s) 760
Eco31I GGTCTC 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 609
EcoT14I CCWWGG 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 760
Esp3I CGTCTC 2 cut(s) 1377, 1539
FaeI CATG 8 cut(s) 234, 247, 377, 503, 772, 1117, 1548, 1587
FaqI GGGAC 4 cut(s) 132, 276, 452, 976
FatI CATG 8 cut(s) 230, 243, 373, 499, 768, 1113, 1544, 1583
FauI CCCGC 1 cut(s) 1209
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 1278
Fnu4HI GCNGC 4 cut(s) 131, 1091, 1205, 1256
FokI GGATG 3 cut(s) 756, 1246, 1447
Fsp4HI GCNGC 4 cut(s) 131, 1091, 1205, 1256
FspBI CTAG 2 cut(s) 801, 908
GluI GCNGC 4 cut(s) 131, 1091, 1205, 1256
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 3 cut(s) 327, 1257, 1563
HaeIII GGCC 3 cut(s) 411, 755, 1099
HapII CCGG 6 cut(s) 387, 523, 563, 704, 752, 827
Hin1II CATG 8 cut(s) 234, 247, 377, 503, 772, 1117, 1548, 1587
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 6 cut(s) 110, 201, 309, 666, 850, 871
HpaII CCGG 6 cut(s) 387, 523, 563, 704, 752, 827
HphI GGTGA 8 cut(s) 165, 167, 902, 923, 1046, 1170, 1344, 1440
Hpy166II GTNNAC 3 cut(s) 442, 749, 1279
Hpy188I TCNGA 3 cut(s) 253, 421, 999
Hpy188III TCNNGA 7 cut(s) 166, 205, 329, 500, 638, 847, 1550
Hpy8I GTNNAC 3 cut(s) 442, 749, 1279
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 3 cut(s) 596, 1254, 1530
HpyCH4III ACNGT 5 cut(s) 146, 163, 352, 466, 859
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 7 cut(s) 98, 297, 428, 483, 725, 1120, 1284
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 130, 218, 227, 244, 383, 1096
HpyF3I CTNAG 4 cut(s) 53, 250, 512, 709
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 8 cut(s) 234, 247, 377, 503, 772, 1117, 1548, 1587
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 138, 931, 1297
LweI GCATC 4 cut(s) 369, 631, 643, 1157
MaeI CTAG 2 cut(s) 801, 908
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 3 cut(s) 163, 171, 1209
MalI GATC 6 cut(s) 18, 286, 366, 510, 794, 1111
MboI GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
MboII GAAGA 9 cut(s) 16, 34, 304, 413, 488, 545, 640, 1073, 1185
MflI RGATCY 2 cut(s) 284, 1109
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 104, 318, 880
MmeI TCCRAC 1 cut(s) 262
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 5 cut(s) 104, 138, 570, 782, 957
MslI CAYNNNNRTG 4 cut(s) 639, 839, 1045, 1543
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 6 cut(s) 387, 523, 563, 704, 752, 827
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 3 cut(s) 846, 1222, 1284
MwoI GCNNNNNNNGC 7 cut(s) 68, 130, 218, 227, 244, 383, 1096
NciI CCSGG 1 cut(s) 388
NdeII GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
NlaIII CATG 8 cut(s) 234, 247, 377, 503, 772, 1117, 1548, 1587
NlaIV GGNNCC 4 cut(s) 134, 148, 286, 392
NmuCI GTSAC 3 cut(s) 163, 171, 1209
NspI RCATGY 1 cut(s) 772
OliI CACNNNNGTG 1 cut(s) 1045
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 3 cut(s) 846, 1222, 1284
PfeI GAWTC 3 cut(s) 201, 666, 850
PinAI ACCGGT 1 cut(s) 522
PkrI GCNGC 4 cut(s) 132, 1092, 1206, 1257
PleI GAGTC 3 cut(s) 104, 317, 879
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 3 cut(s) 104, 317, 879
Ppu21I YACGTR 1 cut(s) 439
PscI ACATGT 1 cut(s) 768
PspCI CACGTG 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 134, 148, 286, 392
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 284, 1109
RsaI GTAC 4 cut(s) 392, 567, 815, 1019
RsaNI GTAC 4 cut(s) 391, 566, 814, 1018
RseI CAYNNNNRTG 4 cut(s) 639, 839, 1045, 1543
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 5 cut(s) 104, 138, 570, 782, 957
SatI GCNGC 4 cut(s) 131, 1091, 1205, 1256
Sau3AI GATC 6 cut(s) 16, 284, 364, 508, 792, 1109
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 3 cut(s) 104, 318, 880
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 4 cut(s) 369, 631, 643, 1157
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 4 cut(s) 639, 839, 1045, 1543
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SspI AATATT 1 cut(s) 1556
SspMI CTAG 2 cut(s) 801, 908
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 5 cut(s) 146, 163, 352, 466, 859
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 330, 363, 1165
TatI WGTACW 1 cut(s) 813
TauI GCSGC 4 cut(s) 133, 1093, 1207, 1258
TfiI GAWTC 3 cut(s) 201, 666, 850
Tru1I TTAA 5 cut(s) 104, 138, 570, 782, 957
Tru9I TTAA 5 cut(s) 104, 138, 570, 782, 957
TscAI CASTG 4 cut(s) 64, 310, 469, 1050
TseFI GTSAC 3 cut(s) 163, 171, 1209
Tsp45I GTSAC 3 cut(s) 163, 171, 1209
TspDTI ATGAA 4 cut(s) 17, 488, 609, 690
TspGWI ACGGA 3 cut(s) 632, 756, 1521
TspRI CASTG 4 cut(s) 64, 310, 469, 1050
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 5 cut(s) 536, 596, 609, 1003, 1312
XceI RCATGY 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 1278
XspI CTAG 2 cut(s) 801, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.