pycom08g11410

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012723
Physical Location & Seq
Forward (+)
9656290 .. 9656868
579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11410.1

Sequence Viewer

Length: 579 bp
ATGAAGAGAAGAAACATTCACATTTTTGTACTCTCCATTTTCCTCGTACCGATCTTTTTCCTCGGTGCTGCCGCTGGCGAAGAGCTTCAGATTTCGCACAATGCCGGCCTGAGATACTCGTTGCGGACGTCACATTACAAGCAAAGGCAGCTCTTGTATTACATTGACCAAGATGGGTCACGAGGTGAAACTGTGACAGTTCCAGACTCCCTTGTTTTTGAAAACTCAAGACTCAGAAGTGCCTACATTGCCCTCCAAGCATGGAAGCAAGCCATGGTCTCTGATCCTCGGGATCAAATATCAAACTGGGTTGGATCCGATGTGTGCAAATACACTGGAGTCTTCTGCGCCCAAGCCCCAGACGACCCGTCAGTCCAAACTGTTGCCGGCATTGATCTAAACCATGCTGACATTGCAGGGTTTCTCCCGGAAGAACTTGGTCTTCTCTCGGATATTGCATTGTTTCACATCAACTCAAATCGTTTCTGTGGCAAAGTCCCAAAGAGTTTCAAAAAGTTGCAGCTCCTTTTCGAGCTTGATCTTGCTAAGCAACAACCGCTTTGCTGGGGAATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

6.95

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 84 - 116 1.5e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
AatII GACGTC 1 cut(s) 131
AciI CCGC 3 cut(s) 72, 124, 557
AclWI GGATC 4 cut(s) 278, 300, 309, 322
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 2 cut(s) 30, 48
AgsI TTSAA 2 cut(s) 221, 511
AhdI GACNNNNNGTC 1 cut(s) 367
AluBI AGCT 4 cut(s) 85, 151, 523, 535
AluI AGCT 4 cut(s) 85, 151, 523, 535
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 4 cut(s) 278, 300, 309, 322
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 68, 148, 520
ApoI RAATTY 1 cut(s) 570
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 288
BamHI GGATCC 1 cut(s) 314
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 334, 434
BbvI GCAGC 3 cut(s) 55, 160, 532
BccI CCATC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 283
BisI GCNGC 4 cut(s) 69, 72, 149, 521
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 4 cut(s) 70, 73, 150, 522
Bme1390I CCNGG 1 cut(s) 428
BmeRI GACNNNNNGTC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 428
BmrI ACTGGG 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 334, 434
BpmI CTGGAG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 61, 273, 287
Bse118I RCCGGY 2 cut(s) 104, 386
Bse1I ACTGG 2 cut(s) 311, 340
Bse3DI GCAATG 2 cut(s) 246, 411
BseDI CCNNGG 3 cut(s) 61, 273, 287
BseMI GCAATG 2 cut(s) 246, 411
BseMII CTCAG 2 cut(s) 101, 247
BseNI ACTGG 2 cut(s) 311, 340
BseXI GCAGC 3 cut(s) 55, 160, 532
BseYI CCCAGC 1 cut(s) 564
BshFI GGCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 3 cut(s) 105, 387, 428
BslFI GGGAC 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 288
Bsp143I GATC 6 cut(s) 51, 283, 292, 314, 394, 538
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 72, 124, 557
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 102, 246
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 4 cut(s) 278, 300, 309, 322
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 283
BsrDI GCAATG 2 cut(s) 246, 411
BsrFI RCCGGY 2 cut(s) 104, 386
BsrI ACTGG 2 cut(s) 311, 340
BssAI RCCGGY 2 cut(s) 104, 386
BssECI CCNNGG 3 cut(s) 61, 273, 287
BssMI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
BssNI GRCGYC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 193, 199, 382
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 76, 106, 270, 388
BstDEI CTNAG 3 cut(s) 110, 233, 546
BstDSI CCRYGG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 6 cut(s) 54, 286, 295, 317, 397, 541
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
BstMWI GCNNNNNNNGC 5 cut(s) 148, 248, 257, 413, 556
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 55, 160, 532
BstV2I GAAGAC 2 cut(s) 334, 434
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 4 cut(s) 76, 106, 270, 388
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 2 cut(s) 104, 386
Csp6I GTAC 2 cut(s) 29, 47
CviAII CATG 3 cut(s) 261, 274, 404
CviJI RGCY 7 cut(s) 85, 108, 151, 272, 356, 523, 535
CviKI_1 RGCY 7 cut(s) 85, 108, 151, 272, 356, 523, 535
CviQI GTAC 2 cut(s) 29, 47
DdeI CTNAG 3 cut(s) 110, 233, 546
DpnI GATC 6 cut(s) 53, 285, 294, 316, 396, 540
DpnII GATC 6 cut(s) 51, 283, 292, 314, 394, 538
DraIII CACNNNGTG 1 cut(s) 185
DrdI GACNNNNNNGTC 1 cut(s) 371
DriI GACNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 264, 277, 407
FaiI YATR 3 cut(s) 262, 275, 405
FaqI GGGAC 1 cut(s) 482
FatI CATG 3 cut(s) 260, 273, 403
Fnu4HI GCNGC 4 cut(s) 69, 72, 149, 521
Fsp4HI GCNGC 4 cut(s) 69, 72, 149, 521
GlaI GCGC 1 cut(s) 349
GluI GCNGC 4 cut(s) 69, 72, 149, 521
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 105, 387, 428
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 264, 277, 407
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 3 cut(s) 206, 231, 339
HpaII CCGG 3 cut(s) 105, 387, 428
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 5 cut(s) 90, 236, 283, 319, 451
Hpy188III TCNNGA 5 cut(s) 180, 203, 228, 290, 576
HpyCH4III ACNGT 3 cut(s) 193, 199, 382
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 327, 416, 458, 520
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 248, 257, 413, 556
HpyF3I CTNAG 3 cut(s) 110, 233, 546
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 264, 277, 407
HspAI GCGC 1 cut(s) 348
KroI GCCGGC 2 cut(s) 104, 386
KroNI GCCGGC 2 cut(s) 106, 388
Kzo9I GATC 6 cut(s) 51, 283, 292, 314, 394, 538
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 528
Lsp1109I GCAGC 3 cut(s) 55, 160, 532
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 3 cut(s) 129, 177, 193
MalI GATC 6 cut(s) 53, 285, 294, 316, 396, 540
MboI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
MboII GAAGA 6 cut(s) 16, 21, 92, 334, 434, 443
MflI RGATCY 1 cut(s) 314
MluCI AATT 1 cut(s) 570
MlyI GAGTC 3 cut(s) 200, 225, 348
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 5 cut(s) 53, 71, 176, 263, 297
MroNI GCCGGC 2 cut(s) 104, 386
MroXI GAANNNNTTC 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 3 cut(s) 105, 387, 428
MspR9I CCNGG 1 cut(s) 428
MwoI GCNNNNNNNGC 5 cut(s) 148, 248, 257, 413, 556
NaeI GCCGGC 2 cut(s) 106, 388
NciI CCSGG 1 cut(s) 428
NcoI CCATGG 1 cut(s) 273
NdeII GATC 6 cut(s) 51, 283, 292, 314, 394, 538
NgoMIV GCCGGC 2 cut(s) 104, 386
NlaIII CATG 3 cut(s) 264, 277, 407
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 3 cut(s) 129, 177, 193
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdiI GCCGGC 2 cut(s) 106, 388
PdmI GAANNNNTTC 1 cut(s) 84
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 4 cut(s) 70, 73, 150, 522
PleI GAGTC 3 cut(s) 200, 225, 347
PpsI GAGTC 3 cut(s) 200, 225, 347
PspFI CCCAGC 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 316
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 2 cut(s) 30, 48
RsaNI GTAC 2 cut(s) 29, 47
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 4 cut(s) 69, 72, 149, 521
Sau3AI GATC 6 cut(s) 51, 283, 292, 314, 394, 538
SchI GAGTC 3 cut(s) 200, 225, 348
ScrFI CCNGG 1 cut(s) 428
SetI ASST 6 cut(s) 87, 131, 153, 187, 525, 537
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 1 cut(s) 570
SsiI CCGC 3 cut(s) 72, 124, 557
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 193, 199, 382
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 531
TasI AATT 1 cut(s) 570
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 74
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 3 cut(s) 129, 177, 193
TseI GCWGC 3 cut(s) 68, 148, 520
Tsp45I GTSAC 3 cut(s) 129, 177, 193
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 84
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.