Rmu_sc0034244.1_g000001

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034244.1
OG0012723
Physical Location & Seq
Reverse (-)
2 .. 498
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034244.1_g000001.1.cds

Sequence Viewer

Length: 497 bp
atgaagagagagattgatcacactcgcattgttctcatactcttcttttgcctcggcactactactactgcccaagaaccccatattttccacaatgcaggcttaacagactcccacatcaagcaaaggcggatccttaatgatggttccagaggtgagactgtcacgatgtcgccctcgcttatttttcccaacccgagaatcaagactgcctacattgcccgccaagcatggaagcaagccatgctctcagaccctctgggacacacagccaactgggttggatccaatgtctgcaactacactggagtcttctgtgctgaagctctcgacgacccaacaacagaaacagtcgctggcatcgatttaaaccatgctgacattgccgggtacctcccagaagagcttggccatctctcagacattgcattgtttcacgtgaactccaatcgtttctgtggcactgtcccaaagagtttcagcaagttgaagcttct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

166

Amino Acids

18.38

Weight (kDa)

6.69

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 390
AciI CCGC 2 cut(s) 130, 223
AclWI GGATC 4 cut(s) 127, 140, 279, 292
AcoI YGGCCR 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 342
AcvI CACGTG 1 cut(s) 439
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 1 cut(s) 490
AluBI AGCT 3 cut(s) 326, 406, 493
AluI AGCT 3 cut(s) 326, 406, 493
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 4 cut(s) 127, 140, 279, 292
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 1 cut(s) 409
Asp718I GGTACC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 2 cut(s) 132, 284
BanI GGYRCC 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 304
BccI CCATC 2 cut(s) 137, 420
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 388
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 4 cut(s) 134, 148, 286, 392
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 327
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse1I ACTGG 2 cut(s) 281, 310
Bse3DI GCAATG 3 cut(s) 216, 381, 423
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 52
BseMI GCAATG 3 cut(s) 216, 381, 423
BseMII CTCAG 2 cut(s) 264, 432
BseNI ACTGG 2 cut(s) 281, 310
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 2 cut(s) 276, 452
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 276, 452
BsnI GGCC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 3 cut(s) 16, 132, 284
BspACI CCGC 2 cut(s) 130, 223
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 263, 431
BspDI ATCGAT 1 cut(s) 363
BspLI GGNNCC 4 cut(s) 134, 148, 286, 392
BspPI GGATC 4 cut(s) 127, 140, 279, 292
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 390
BsrDI GCAATG 3 cut(s) 216, 381, 423
BsrI ACTGG 2 cut(s) 281, 310
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 3 cut(s) 16, 132, 284
Bst4CI ACNGT 3 cut(s) 163, 352, 466
Bst6I CTCTTC 2 cut(s) 47, 396
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 100, 223, 240, 358
BstDEI CTNAG 2 cut(s) 250, 418
BstKTI GATC 3 cut(s) 19, 135, 287
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 16, 132, 284
BstMWI GCNNNNNNNGC 4 cut(s) 218, 227, 244, 383
BstSCI CCNGG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 132, 284
BstYI RGATCY 2 cut(s) 132, 284
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 303, 462
Cac8I GCNNGC 4 cut(s) 100, 223, 240, 358
CaiI CAGNNNCTG 1 cut(s) 356
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 231, 244, 374
CviJI RGCY 7 cut(s) 102, 242, 272, 326, 406, 411, 493
CviKI_1 RGCY 7 cut(s) 102, 242, 272, 326, 406, 411, 493
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 250, 418
DpnI GATC 3 cut(s) 18, 134, 286
DpnII GATC 3 cut(s) 16, 132, 284
DraI TTTAAA 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 47, 396
EarI CTCTTC 2 cut(s) 47, 396
EciI GGCGGA 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 196
FaeI CATG 3 cut(s) 234, 247, 377
FaiI YATR 5 cut(s) 38, 84, 232, 245, 375
FaqI GGGAC 2 cut(s) 276, 452
FatI CATG 3 cut(s) 230, 243, 373
FauI CCCGC 1 cut(s) 230
FbaI TGATCA 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 387
Hin1II CATG 3 cut(s) 234, 247, 377
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 3 cut(s) 110, 201, 309
HpaII CCGG 1 cut(s) 387
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 2 cut(s) 253, 421
Hpy188III TCNNGA 4 cut(s) 150, 166, 205, 329
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 3 cut(s) 163, 352, 466
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 98, 297, 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 227, 244, 383
HpyF3I CTNAG 2 cut(s) 250, 418
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 234, 247, 377
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 16, 132, 284
LguI GCTCTTC 1 cut(s) 396
LpnPI CCDG 8 cut(s) 84, 163, 245, 262, 291, 342, 400, 411
LweI GCATC 1 cut(s) 369
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 163
MalI GATC 3 cut(s) 18, 134, 286
MboI GATC 3 cut(s) 16, 132, 284
MboII GAAGA 4 cut(s) 16, 34, 304, 413
MflI RGATCY 2 cut(s) 132, 284
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 2 cut(s) 104, 318
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 5 cut(s) 62, 146, 187, 267, 404
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 3 cut(s) 104, 138, 368
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 388
MwoI GCNNNNNNNGC 4 cut(s) 218, 227, 244, 383
NciI CCSGG 1 cut(s) 388
NdeII GATC 3 cut(s) 16, 132, 284
NlaIII CATG 3 cut(s) 234, 247, 377
NlaIV GGNNCC 4 cut(s) 134, 148, 286, 392
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 201
PleI GAGTC 2 cut(s) 104, 317
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 2 cut(s) 104, 317
Ppu21I YACGTR 1 cut(s) 439
PspCI CACGTG 1 cut(s) 439
PspN4I GGNNCC 4 cut(s) 134, 148, 286, 392
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 132, 284
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 3 cut(s) 104, 138, 368
Sau3AI GATC 3 cut(s) 16, 132, 284
SchI GAGTC 2 cut(s) 104, 318
ScrFI CCNGG 1 cut(s) 388
SetI ASST 6 cut(s) 157, 328, 396, 408, 441, 495
SfaNI GCATC 1 cut(s) 369
SsiI CCGC 2 cut(s) 130, 223
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 3 cut(s) 163, 352, 466
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 330, 363
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 3 cut(s) 104, 138, 368
Tru9I TTAA 3 cut(s) 104, 138, 368
TscAI CASTG 2 cut(s) 310, 469
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 310, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.