RLG00000010309

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012723
Physical Location & Seq
Reverse (-)
484206 .. 485855
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010309

Sequence Viewer

Length: 1650 bp
ATGAAGAGAAAGATTGATCACACTCGCATTGTTCTCATACTCTTCTTTTGCCTCAGCAGTGCTACCACTGCCCAAGAACCCCATATTTTCCACAATGCAGGCTTAACAGACTCCAACATCAAGCAAAGGCGGCTCCTTAATGACGGTTCCAGAGGTGAGACTGTCACGGTGTCACCCTCGCTTATTTTTCCCAACCCAAGAATCAAGACTGCCTACATTGCCCTCCAAGCATGGAAGCAAGCCATGTTCTCAGACCCTCTGGGACACACAGCCAACTGGGTTGGATCCAATGTCTGCAACTACACTGGAGTCTTCTGTGCTGAAGCTCTCGACGACCCAACAATAGAAACAGTCGCTGGCATCGATCTAAACCATGCTGACATTGCCGGGTTCCTCCCAGAAGAGCTTGGCCATCTTTCAGACATTGCATTGTTTCACGTGAACTCCAATCGTTTCTGTGGCACTGTCCCAAAGAGTTTCAGCAAGTTGAAGCTTCTTCATGAGCTTGATCTAAGTAATAACCGGTTTGCTGGGAAATTCCCTCTTGTTCTTCTTCAACTGCCAGTACTTAAATACCTTGACATTCGGTTCAATGAATTTGAAGGAAGAATTCCCAAGGAACTATTTGATAAGCATCTTGATGCCATCTTCCTCAACGACAACAGATTCGCCTATGAACTGCCACATAATTTAGGAAACTCGCCGGTCTCAGTTATTGTTCTTGCAAACAATAAGTTCCACGGATGTTTACCGGCCAGCCTTGGCAACATGTCCAAGAACTTAAACGAGCTGATACTTACTAGAAATGGGTTGAACTCCTGTTTGCCAGAGGAAATAGGAATGCTCAAGAATCTTACTGTGTTAGATGTGAGTCATAATGGTCTTTTCGGTGAGTTGCCACACGCATTAGGTGAAATGTTGAGCTTGGAGGAGCTGAATGTGGCTTATAACAATCTTACAGGGATTATACCAGAGAGCATTTGTGGGCTTCCAAATCTGAAAAATTTTAGCTTTGGGTACAACTTTTTCACAGGTGAGCCACCAGCGTGTTTAGACTTGGAAGAGTTTGATGATAGCAGGAATTGTTTGCGGCGTAGGCCAAAGCAGAGATCCATGTTGCAATGTAAATTATTTTTGTCCAAGTCTGTTGGTTGTAGTTCTTTTCGATGCCAACCATCACCGCCACCACCATCTTCTCCCCCTCCGCCGCCACAACCACAGCATTCTCCTCCACCACCACCTTCCCCACCACCACCGCCACATGCTCCTCCACCGCCGCCATCCCCACCGCCTCCAGTATACTGCATTCACGCTCCACCTCCCCCTCCACCAAATTTCCCGCCACCAACTCCACCAAGTCCTCGCTACAATTCACCACCTCCCCCTCCACCAAATTTCCCGCCACCAACTCCACCAAGTCCTCGCTACAATTCACCACCACCCCCGTCATCGTCTCCACCAAATTCTCCTCCACCCCCAACTCCGCCACAATCTCCCCCACCCCCATCTCCACCAACTTCTCCCCCATCATCATCTTATCCATCCCCGCCTCCACCACCCCCTTTACCTCCTTGTAAAGAACCTTCTCCACCTCCGTCTCCACCACCATGTCTGGAATATTCTCCACCTCCACCACCTACTCCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

550

Amino Acids

59.7

Weight (kDa)

6.75

Isoelectric Point (pI)

82.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 74 - 106 3.7e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AccI GTMKAC 1 cut(s) 1299
AclWI GGATC 3 cut(s) 279, 292, 1104
AcoI YGGCCR 2 cut(s) 409, 753
AcsI RAATTY 7 cut(s) 536, 596, 609, 1003, 1333, 1393, 1462
AcuI CTGAAG 1 cut(s) 342
AcvI CACGTG 1 cut(s) 439
AfaI GTAC 2 cut(s) 567, 1019
AflIII ACRYGT 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 5 cut(s) 490, 557, 592, 602, 814
AleI CACNNNNGTG 1 cut(s) 1045
AluBI AGCT 8 cut(s) 326, 406, 493, 505, 790, 924, 934, 1011
AluI AGCT 8 cut(s) 326, 406, 493, 505, 790, 924, 934, 1011
Alw26I GTCTC 4 cut(s) 152, 712, 1458, 1602
AlwI GGATC 3 cut(s) 279, 292, 1104
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 3 cut(s) 409, 753, 1097
ApoI RAATTY 7 cut(s) 536, 596, 609, 1003, 1333, 1393, 1462
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AsiGI ACCGGT 1 cut(s) 522
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 8 cut(s) 165, 167, 902, 923, 1046, 1170, 1365, 1425
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 1567, 1599
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 8 cut(s) 420, 653, 1183, 1198, 1288, 1513, 1534, 1549
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 4 cut(s) 152, 712, 1458, 1602
BfaI CTAG 1 cut(s) 801
BisI GCNGC 4 cut(s) 131, 1091, 1208, 1277
BlsI GCNGC 4 cut(s) 132, 1092, 1209, 1278
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 388
BmiI GGNNCC 4 cut(s) 134, 148, 286, 392
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 4 cut(s) 369, 631, 643, 1157
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 3 cut(s) 327, 1278, 1626
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 3 cut(s) 615, 739, 760
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse118I RCCGGY 3 cut(s) 522, 703, 751
Bse1I ACTGG 4 cut(s) 281, 310, 563, 1295
Bse3DI GCAATG 4 cut(s) 216, 381, 423, 1127
Bse8I GATNNNNATC 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 615, 739, 760
BseGI GGATG 3 cut(s) 749, 1280, 1541
BseJI GATNNNNATC 1 cut(s) 633
BseMI GCAATG 4 cut(s) 216, 381, 423, 1127
BseMII CTCAG 3 cut(s) 67, 264, 723
BseNI ACTGG 4 cut(s) 281, 310, 563, 1295
BseRI GAGGAG 4 cut(s) 944, 1218, 1257, 1458
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 411, 755, 1099
BshTI ACCGGT 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 363
BsiSI CCGG 4 cut(s) 387, 523, 704, 752
BslFI GGGAC 2 cut(s) 276, 452
BsmAI GTCTC 4 cut(s) 152, 712, 1458, 1602
BsmBI CGTCTC 2 cut(s) 1458, 1602
BsmFI GGGAC 2 cut(s) 276, 452
BsmI GAATGC 3 cut(s) 846, 1222, 1305
BsnI GGCC 3 cut(s) 411, 755, 1099
Bso31I GGTCTC 1 cut(s) 712
Bsp143I GATC 5 cut(s) 16, 284, 364, 508, 1109
BspANI GGCC 3 cut(s) 411, 755, 1099
BspCNI CTCAG 3 cut(s) 66, 263, 722
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 4 cut(s) 134, 148, 286, 392
BspPI GGATC 3 cut(s) 279, 292, 1104
BspQI GCTCTTC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 4 cut(s) 216, 381, 423, 1127
BsrFI RCCGGY 3 cut(s) 522, 703, 751
BsrI ACTGG 4 cut(s) 281, 310, 563, 1295
BssAI RCCGGY 3 cut(s) 522, 703, 751
BssECI CCNNGG 3 cut(s) 615, 739, 760
BssMI GATC 5 cut(s) 16, 284, 364, 508, 1109
BssNAI GTATAC 1 cut(s) 1300
BssT1I CCWWGG 2 cut(s) 615, 760
Bst1107I GTATAC 1 cut(s) 1300
Bst4CI ACNGT 6 cut(s) 146, 163, 169, 352, 466, 859
Bst6I CTCTTC 3 cut(s) 47, 396, 1056
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 100, 240, 358, 757
BstDEI CTNAG 4 cut(s) 53, 250, 512, 709
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 3 cut(s) 749, 1280, 1541
BstKTI GATC 5 cut(s) 19, 287, 367, 511, 1112
BstMAI GTCTC 4 cut(s) 152, 712, 1458, 1602
BstMBI GATC 5 cut(s) 16, 284, 364, 508, 1109
BstMWI GCNNNNNNNGC 6 cut(s) 68, 130, 218, 227, 383, 1096
BstNSI RCATGY 2 cut(s) 772, 1265
BstSCI CCNGG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 284, 1109
BstYI RGATCY 2 cut(s) 284, 1109
BstZ17I GTATAC 1 cut(s) 1300
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 411, 755, 1099
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 3 cut(s) 749, 1280, 1541
BtsI GCAGTG 2 cut(s) 64, 66
BtsIMutI CAGTG 4 cut(s) 64, 66, 303, 462
Cac8I GCNNGC 4 cut(s) 100, 240, 358, 757
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 3 cut(s) 522, 703, 751
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 2 cut(s) 566, 1018
CspAI ACCGGT 1 cut(s) 522
CviAII CATG 9 cut(s) 231, 244, 374, 500, 769, 1114, 1262, 1608, 1647
CviQI GTAC 2 cut(s) 566, 1018
DdeI CTNAG 4 cut(s) 53, 250, 512, 709
DpnI GATC 5 cut(s) 18, 286, 366, 510, 1111
DpnII GATC 5 cut(s) 16, 284, 364, 508, 1109
EaeI YGGCCR 2 cut(s) 409, 753
Eam1104I CTCTTC 3 cut(s) 47, 396, 1056
EarI CTCTTC 3 cut(s) 47, 396, 1056
EciI GGCGGA 2 cut(s) 1194, 1473
Eco130I CCWWGG 2 cut(s) 615, 760
Eco31I GGTCTC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 609
EcoT14I CCWWGG 2 cut(s) 615, 760
ErhI CCWWGG 2 cut(s) 615, 760
Esp3I CGTCTC 2 cut(s) 1458, 1602
FaeI CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1265, 1611, 1650
FaqI GGGAC 2 cut(s) 276, 452
FatI CATG 9 cut(s) 230, 243, 373, 499, 768, 1113, 1261, 1607, 1646
FauI CCCGC 3 cut(s) 1347, 1407, 1554
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 1299
Fnu4HI GCNGC 4 cut(s) 131, 1091, 1208, 1277
FokI GGATG 3 cut(s) 756, 1267, 1528
Fsp4HI GCNGC 4 cut(s) 131, 1091, 1208, 1277
FspBI CTAG 1 cut(s) 801
GluI GCNGC 4 cut(s) 131, 1091, 1208, 1277
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 3 cut(s) 327, 1278, 1626
HaeIII GGCC 3 cut(s) 411, 755, 1099
HapII CCGG 4 cut(s) 387, 523, 704, 752
Hin1II CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1265, 1611, 1650
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 6 cut(s) 110, 201, 309, 666, 850, 871
HpaII CCGG 4 cut(s) 387, 523, 704, 752
HphI GGTGA 8 cut(s) 165, 167, 902, 923, 1046, 1170, 1365, 1425
Hpy166II GTNNAC 3 cut(s) 442, 749, 1300
Hpy188I TCNGA 3 cut(s) 253, 421, 999
Hpy188III TCNNGA 7 cut(s) 150, 205, 329, 500, 638, 847, 1613
Hpy8I GTNNAC 3 cut(s) 442, 749, 1300
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 3 cut(s) 596, 1251, 1593
HpyCH4III ACNGT 6 cut(s) 146, 163, 169, 352, 466, 859
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 6 cut(s) 98, 297, 428, 725, 1120, 1305
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 130, 218, 227, 383, 1096
HpyF3I CTNAG 4 cut(s) 53, 250, 512, 709
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1265, 1611, 1650
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 284, 364, 508, 1109
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 138, 931, 1270, 1318
LweI GCATC 4 cut(s) 369, 631, 643, 1157
MaeI CTAG 1 cut(s) 801
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 163, 171
MalI GATC 5 cut(s) 18, 286, 366, 510, 1111
MboI GATC 5 cut(s) 16, 284, 364, 508, 1109
MflI RGATCY 2 cut(s) 284, 1109
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 104, 318, 880
MmeI TCCRAC 2 cut(s) 138, 262
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 4 cut(s) 104, 138, 570, 782
MslI CAYNNNNRTG 3 cut(s) 639, 1045, 1606
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 4 cut(s) 387, 523, 704, 752
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 3 cut(s) 846, 1222, 1305
MwoI GCNNNNNNNGC 6 cut(s) 68, 130, 218, 227, 383, 1096
NciI CCSGG 1 cut(s) 388
NdeII GATC 5 cut(s) 16, 284, 364, 508, 1109
NlaIII CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1265, 1611, 1650
NlaIV GGNNCC 4 cut(s) 134, 148, 286, 392
NmuCI GTSAC 2 cut(s) 163, 171
NspI RCATGY 2 cut(s) 772, 1265
OliI CACNNNNGTG 1 cut(s) 1045
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 3 cut(s) 846, 1222, 1305
PfeI GAWTC 3 cut(s) 201, 666, 850
PinAI ACCGGT 1 cut(s) 522
PkrI GCNGC 4 cut(s) 132, 1092, 1209, 1278
PleI GAGTC 3 cut(s) 104, 317, 879
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 3 cut(s) 104, 317, 879
Ppu21I YACGTR 1 cut(s) 439
PscI ACATGT 1 cut(s) 768
PsiI TTATAA 1 cut(s) 948
PspCI CACGTG 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 134, 148, 286, 392
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 284, 1109
RsaI GTAC 2 cut(s) 567, 1019
RsaNI GTAC 2 cut(s) 566, 1018
RseI CAYNNNNRTG 3 cut(s) 639, 1045, 1606
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 4 cut(s) 104, 138, 570, 782
SatI GCNGC 4 cut(s) 131, 1091, 1208, 1277
Sau3AI GATC 5 cut(s) 16, 284, 364, 508, 1109
ScaI AGTACT 1 cut(s) 567
SchI GAGTC 3 cut(s) 104, 318, 880
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 4 cut(s) 369, 631, 643, 1157
SmiMI CAYNNNNRTG 3 cut(s) 639, 1045, 1606
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SspI AATATT 1 cut(s) 1619
SspMI CTAG 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 2 cut(s) 615, 760
TaaI ACNGT 6 cut(s) 146, 163, 169, 352, 466, 859
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 330, 363, 1165
TatI WGTACW 1 cut(s) 565
TauI GCSGC 4 cut(s) 133, 1093, 1210, 1279
TfiI GAWTC 3 cut(s) 201, 666, 850
Tru1I TTAA 4 cut(s) 104, 138, 570, 782
Tru9I TTAA 4 cut(s) 104, 138, 570, 782
TscAI CASTG 4 cut(s) 64, 73, 310, 469
TseFI GTSAC 2 cut(s) 163, 171
Tsp45I GTSAC 2 cut(s) 163, 171
TspDTI ATGAA 4 cut(s) 17, 488, 609, 690
TspGWI ACGGA 2 cut(s) 756, 1584
TspRI CASTG 4 cut(s) 64, 73, 310, 469
XapI RAATTY 7 cut(s) 536, 596, 609, 1003, 1333, 1393, 1462
XceI RCATGY 2 cut(s) 772, 1265
XmiI GTMKAC 1 cut(s) 1299
XspI CTAG 1 cut(s) 801
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.