Prupe.1G465200_v2.0.a1

leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
38804229 .. 38805859
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G465200.1

Sequence Viewer

Length: 1488 bp
CTGAGAGAGTTAAAACTTTCTCATATTAATCAGAGGCAGCTCTTGTTCTACACTGACCAAGATGGGTCAAGAGGGGAGCTTGTGGCAGTCCCATCCTCCCTTGTTTTTCACAACCCAAGACTCAGGAGTGCCTACGTTGCCCTCCAGGCATGGAAACAAGCCATGCTCTCAGACCCTCTGGGCCAAACATCCAACTGGGTTGGATCCAATGTCTGCAGCTACACTGGAGTCTTCTGCTCCCGAGCCCTAGATGACCCGTCAGTCGAAACTGTGGCCGGCATTGATCTGAACCACGGCGGCATTGCAGGGTACCTCCCTGAAGAGCTGGGTCTGCTCTCAGATATTGCATTGTTCCACATCAACTCCAATCGGTTTTGCGGCAGTGTCCCGAAGAGTTTCAGCAAACTGAAGCTGCTTTTTGAGCTTGATCTGAGCAACAACCGCTTTGCTGGGAAGTTCCCTCTTGTTGTTCTTCGACTGCCAAAGCTAAAATTCCTGGACCTGCGATTCAATGAGTTTGAAGGTAAGGTCCCCAAGGAACTGTTTGATAAAGATCTAGATGCAATCTTCATCAACCACAACATGTTCTCCTTCGAATTGCCAGATAATTTGGGGAACTCGCCAGTCTCAGTTATTGTTCTTGCAAACAACAACTTCCATGGGTGTGTGCCAGCCAGCCTTGGTAACATGTCCAAGAATTTGAACGAAGTGGTGCTCACAAACAACGGCTTCCACTCGTGCTTGCCAAAGGAAATAGGGATGCTGAAGGATGTAACTGTGTTTGATGTGAGCTATAATCGGATTGTCGGTGAGTTGCCAGAGGCAGTGGGTGAAATGGTGAGCTTGGAGAAGCTCAATGTGGCTCATAACATGCTAAGAGGGAACATACCTGAGAGCGTTTGTGAGCTTCAGAACCTGAGGAACTTTAGCTTTGAGCACAACTTCTTCACTAGTGAGCCACCAATGTGTTTGAAATTGGAGAAGTTTGATGACAGCAAGAATTGCTTGCGGCGTAGGCCAAAGCAGAGAACCATGTTGCATTGTAAATTGGCCTTGTCTAAGGGTGTTCGTTGTAGTTCTTTTGGATGCCGTCCTTCTGTTCCTCCCTCCCCATCACCACCACCTCCACCACCACCATCTCCATCACCACCACCTCCATCACCATCACCACCACCTCCATCGCCATCACCTCCACCTCCTCCTCCTCCACCACCTCCACCTCCTCCTTTTCTAGTTCCTTCTTTTTTGGAATTTTTGTACTTTTCTGGCAAGCCTCAGAAGTTGCAACCCTCTAATTCTCATCCATCGCCGCCTCCACCACCCATTTATTCTCCACCACCCGCTTCACCTTCTCCACCTCCATCTCCGCCACCATGTATGAGACCTTCTCCACCTCCACCTTCACCGCCAGCTCCAGTGTATGATGGCCCGTTGCCACCAACTATCGGTGTCTCCTATGCCTCACCACCACCACCACTGTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

54.15

Weight (kDa)

8.22

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012723)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 510
Acc65I GGTACC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 309
AciI CCGC 8 cut(s) 297, 378, 442, 1009, 1310, 1341, 1367, 1406
AclWI GGATC 2 cut(s) 198, 211
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 491, 697, 1250
AcuI CTGAAG 4 cut(s) 339, 428, 785, 893
AfaI GTAC 2 cut(s) 311, 1259
AfiI CCNNNNNNNGG 1 cut(s) 1445
AflIII ACRYGT 2 cut(s) 582, 687
AgsI TTSAA 4 cut(s) 511, 521, 703, 973
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 2 cut(s) 144, 495
AleI CACNNNNGTG 1 cut(s) 964
Alw21I GWGCWC 2 cut(s) 717, 939
Alw26I GTCTC 3 cut(s) 631, 1375, 1456
AlwI GGATC 2 cut(s) 198, 211
AlwNI CAGNNNCTG 1 cut(s) 916
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 5 cut(s) 181, 273, 1016, 1050, 1426
ApeKI GCWGC 3 cut(s) 37, 216, 412
ApoI RAATTY 3 cut(s) 491, 697, 1250
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 309
AspS9I GGNCC 4 cut(s) 181, 499, 529, 1427
AsuII TTCGAA 1 cut(s) 594
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 2 cut(s) 499, 529
AxyI CCTNAGG 1 cut(s) 917
BamHI GGATCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 1369, 1401
BauI CACGAG 1 cut(s) 736
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 717, 939
BbvI GCAGC 3 cut(s) 49, 228, 399
BceAI ACGGC 3 cut(s) 310, 742, 1074
BciT130I CCWGG 2 cut(s) 146, 497
BcoDI GTCTC 3 cut(s) 631, 1375, 1456
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 4 cut(s) 248, 557, 951, 1232
BfmI CTRYAG 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 510
BglI GCCNNNNNGGC 1 cut(s) 146
BglII AGATCT 1 cut(s) 553
BisI GCNGC 7 cut(s) 38, 217, 298, 379, 413, 1010, 1310
BlsI GCNGC 7 cut(s) 39, 218, 299, 380, 414, 1011, 1311
Bme1390I CCNGG 2 cut(s) 146, 497
Bme18I GGWCC 2 cut(s) 499, 529
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 4 cut(s) 181, 499, 529, 1427
BmiI GGNNCC 3 cut(s) 205, 311, 531
BmrFI CCNGG 2 cut(s) 146, 497
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 550, 750, 1076
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 1372, 1404
BpmI CTGGAG 3 cut(s) 128, 246, 1398
Bpu14I TTCGAA 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 1375
BsaJI CCNNGG 4 cut(s) 292, 534, 658, 679
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 572, 602
Bsc4I CCNNNNNNNGG 1 cut(s) 1445
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 4 cut(s) 200, 229, 623, 1415
Bse21I CCTNAGG 1 cut(s) 917
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 2 cut(s) 146, 497
BseDI CCNNGG 4 cut(s) 292, 534, 658, 679
BseGI GGATG 6 cut(s) 92, 188, 765, 775, 1091, 1300
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 1445
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 8 cut(s) 136, 183, 351, 422, 642, 882, 908, 1289
BseNI ACTGG 4 cut(s) 200, 229, 623, 1415
BseRI GAGGAG 4 cut(s) 1188, 1191, 1194, 1212
BseXI GCAGC 3 cut(s) 49, 228, 399
BseYI CCCAGC 2 cut(s) 325, 449
BshFI GGCC 5 cut(s) 183, 275, 1018, 1052, 1428
BshNI GGYRCC 1 cut(s) 309
BsiHKAI GWGCWC 2 cut(s) 717, 939
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 3 cut(s) 74, 371, 515
BslI CCNNNNNNNGG 1 cut(s) 1445
BsmAI GTCTC 3 cut(s) 631, 1375, 1456
BsmFI GGGAC 3 cut(s) 74, 371, 515
BsnI GGCC 5 cut(s) 183, 275, 1018, 1052, 1428
Bso31I GGTCTC 1 cut(s) 1375
BsoBI CYCGRG 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 3 cut(s) 247, 717, 939
Bsp143I GATC 4 cut(s) 203, 283, 427, 553
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 8 cut(s) 297, 378, 442, 1009, 1310, 1341, 1367, 1406
BspANI GGCC 5 cut(s) 183, 275, 1018, 1052, 1428
BspCNI CTCAG 8 cut(s) 135, 182, 350, 423, 641, 883, 909, 1288
BspLI GGNNCC 3 cut(s) 205, 311, 531
BspMAI CTGCAG 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 510
BspPI GGATC 2 cut(s) 198, 211
BspQI GCTCTTC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 1375
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 4 cut(s) 200, 229, 623, 1415
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 4 cut(s) 292, 534, 658, 679
BssMI GATC 4 cut(s) 203, 283, 427, 553
BssSI CACGAG 1 cut(s) 736
BssT1I CCWWGG 3 cut(s) 534, 658, 679
Bst2BI CACGAG 1 cut(s) 736
Bst2UI CCWGG 2 cut(s) 146, 497
Bst4CI ACNGT 4 cut(s) 271, 543, 778, 1479
Bst6I CTCTTC 2 cut(s) 315, 386
BstAPI GCANNNNNTGC 1 cut(s) 1002
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 7 cut(s) 277, 672, 676, 743, 1007, 1271, 1410
BstDSI CCRYGG 2 cut(s) 292, 658
BstF5I GGATG 6 cut(s) 92, 188, 765, 775, 1091, 1300
BstKTI GATC 4 cut(s) 206, 286, 430, 556
BstMAI GTCTC 3 cut(s) 631, 1375, 1456
BstMBI GATC 4 cut(s) 203, 283, 427, 553
BstMWI GCNNNNNNNGC 7 cut(s) 137, 146, 331, 421, 441, 1002, 1015
BstNI CCWGG 2 cut(s) 146, 497
BstNSI RCATGY 3 cut(s) 586, 691, 874
BstSCI CCNGG 2 cut(s) 144, 495
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 49, 228, 399
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 2 cut(s) 203, 553
BstYI RGATCY 2 cut(s) 203, 553
Bsu36I CCTNAGG 1 cut(s) 917
BsuRI GGCC 5 cut(s) 183, 275, 1018, 1052, 1428
BtgI CCRYGG 2 cut(s) 292, 658
BtgZI GCGATG 2 cut(s) 1164, 1290
BtsCI GGATG 6 cut(s) 92, 188, 765, 775, 1091, 1300
BtsI GCAGTG 2 cut(s) 388, 831
BtsIMutI CAGTG 6 cut(s) 51, 222, 388, 831, 1422, 1475
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 7 cut(s) 277, 672, 676, 743, 1007, 1271, 1410
CaiI CAGNNNCTG 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 4 cut(s) 181, 499, 529, 1427
Csp6I GTAC 2 cut(s) 310, 1258
CviAII CATG 8 cut(s) 150, 163, 583, 659, 688, 871, 1033, 1374
CviQI GTAC 2 cut(s) 310, 1258
DpnI GATC 4 cut(s) 205, 285, 429, 555
DpnII GATC 4 cut(s) 203, 283, 427, 553
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 315, 386
EarI CTCTTC 2 cut(s) 315, 386
EciI GGCGGA 1 cut(s) 1356
Eco130I CCWWGG 3 cut(s) 534, 658, 679
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 1375
Eco47I GGWCC 2 cut(s) 499, 529
Eco57I CTGAAG 4 cut(s) 339, 428, 785, 893
Eco81I CCTNAGG 1 cut(s) 917
Eco88I CYCGRG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 144, 495
EcoT14I CCWWGG 3 cut(s) 534, 658, 679
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 3 cut(s) 534, 658, 679
FaeI CATG 8 cut(s) 153, 166, 586, 662, 691, 874, 1036, 1377
FalI AAGNNNNNCTT 2 cut(s) 989, 1021
FaqI GGGAC 3 cut(s) 74, 371, 515
FatI CATG 8 cut(s) 149, 162, 582, 658, 687, 870, 1032, 1373
FauI CCCGC 1 cut(s) 1348
Fnu4HI GCNGC 7 cut(s) 38, 217, 298, 379, 413, 1010, 1310
FokI GGATG 6 cut(s) 79, 175, 772, 782, 1098, 1287
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 7 cut(s) 38, 217, 298, 379, 413, 1010, 1310
FspBI CTAG 4 cut(s) 248, 557, 951, 1232
GluI GCNGC 7 cut(s) 38, 217, 298, 379, 413, 1010, 1310
GsaI CCCAGC 2 cut(s) 329, 453
GsuI CTGGAG 3 cut(s) 128, 246, 1398
HaeIII GGCC 5 cut(s) 183, 275, 1018, 1052, 1428
HapII CCGG 1 cut(s) 276
Hin1II CATG 8 cut(s) 153, 166, 586, 662, 691, 874, 1036, 1377
HinfI GANTC 3 cut(s) 120, 228, 507
HpaII CCGG 1 cut(s) 276
Hpy188I TCNGA 8 cut(s) 33, 172, 288, 340, 432, 801, 912, 1278
Hpy188III TCNNGA 5 cut(s) 69, 124, 240, 388, 557
HpyAV CCTTC 8 cut(s) 515, 601, 760, 1104, 1248, 1359, 1395, 1410
HpyCH4III ACNGT 4 cut(s) 271, 543, 778, 1479
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 7 cut(s) 216, 305, 347, 563, 644, 1039, 1285
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 146, 331, 421, 441, 1002, 1015
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 8 cut(s) 153, 166, 586, 662, 691, 874, 1036, 1377
KpnI GGTACC 1 cut(s) 313
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 4 cut(s) 203, 283, 427, 553
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 3 cut(s) 76, 242, 1417
Lsp1109I GCAGC 3 cut(s) 49, 228, 399
LweI GCATC 3 cut(s) 550, 750, 1076
MaeI CTAG 4 cut(s) 248, 557, 951, 1232
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 683, 772
MalI GATC 4 cut(s) 205, 285, 429, 555
MboI GATC 4 cut(s) 203, 283, 427, 553
MboII GAAGA 6 cut(s) 223, 332, 403, 464, 559, 937
MflI RGATCY 2 cut(s) 203, 553
MhlI GDGCHC 3 cut(s) 247, 717, 939
MluCI AATT 9 cut(s) 491, 596, 607, 697, 974, 1000, 1046, 1250, 1294
MlyI GAGTC 2 cut(s) 114, 237
MmeI TCCRAC 2 cut(s) 181, 216
MroNI GCCGGC 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 2 cut(s) 11, 27
MslI CAYNNNNRTG 2 cut(s) 663, 964
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 146, 497
MvaI CCWGG 2 cut(s) 146, 497
MwoI GCNNNNNNNGC 7 cut(s) 137, 146, 331, 421, 441, 1002, 1015
NaeI GCCGGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 658
NdeII GATC 4 cut(s) 203, 283, 427, 553
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 8 cut(s) 153, 166, 586, 662, 691, 874, 1036, 1377
NlaIV GGNNCC 3 cut(s) 205, 311, 531
NspI RCATGY 3 cut(s) 586, 691, 874
NspV TTCGAA 1 cut(s) 594
OliI CACNNNNGTG 1 cut(s) 964
PciI ACATGT 2 cut(s) 582, 687
PciSI GCTCTTC 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 507
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 7 cut(s) 39, 218, 299, 380, 414, 1011, 1311
PleI GAGTC 2 cut(s) 114, 236
PpsI GAGTC 2 cut(s) 114, 236
PpuMI RGGWCCY 1 cut(s) 529
PscI ACATGT 2 cut(s) 582, 687
PshBI ATTAAT 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 144, 495
PspFI CCCAGC 2 cut(s) 325, 449
PspGI CCWGG 2 cut(s) 144, 495
PspN4I GGNNCC 3 cut(s) 205, 311, 531
PspPI GGNCC 4 cut(s) 181, 499, 529, 1427
PspPPI RGGWCCY 1 cut(s) 529
PstI CTGCAG 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 916
PsuI RGATCY 2 cut(s) 203, 553
RsaI GTAC 2 cut(s) 311, 1259
RsaNI GTAC 2 cut(s) 310, 1258
RseI CAYNNNNRTG 2 cut(s) 663, 964
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 11, 27
SatI GCNGC 7 cut(s) 38, 217, 298, 379, 413, 1010, 1310
Sau3AI GATC 4 cut(s) 203, 283, 427, 553
Sau96I GGNCC 4 cut(s) 181, 499, 529, 1427
SchI GAGTC 2 cut(s) 114, 237
ScrFI CCNGG 2 cut(s) 146, 497
SduI GDGCHC 3 cut(s) 247, 717, 939
SfaNI GCATC 3 cut(s) 550, 750, 1076
SfcI CTRYAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 594
SinI GGWCC 2 cut(s) 499, 529
SmiMI CAYNNNNRTG 2 cut(s) 663, 964
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 9 cut(s) 491, 596, 607, 697, 974, 1000, 1046, 1250, 1294
SsiI CCGC 8 cut(s) 297, 378, 442, 1009, 1310, 1341, 1367, 1406
SspMI CTAG 4 cut(s) 248, 557, 951, 1232
StyD4I CCNGG 2 cut(s) 144, 495
StyI CCWWGG 3 cut(s) 534, 658, 679
TaaI ACNGT 4 cut(s) 271, 543, 778, 1479
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 264, 475, 594
TasI AATT 9 cut(s) 491, 596, 607, 697, 974, 1000, 1046, 1250, 1294
TatI WGTACW 1 cut(s) 1257
TauI GCSGC 4 cut(s) 300, 381, 1012, 1312
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 11, 27
Tru9I TTAA 2 cut(s) 11, 27
TscAI CASTG 6 cut(s) 58, 229, 388, 831, 1422, 1482
TseI GCWGC 3 cut(s) 37, 216, 412
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 6 cut(s) 58, 229, 388, 831, 1422, 1482
VpaK11BI GGWCC 2 cut(s) 499, 529
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 3 cut(s) 491, 697, 1250
XbaI TCTAGA 1 cut(s) 556
XceI RCATGY 3 cut(s) 586, 691, 874
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 4 cut(s) 248, 557, 951, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.