Rmu_sc0002859.1_g000007

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002859.1
OG0012723
Physical Location & Seq
Reverse (-)
53416 .. 53925
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002859.1_g000007.1.cds

Sequence Viewer

Length: 510 bp
atgaagagagagattgatcacactcgcattgttctcatactcttcttttgcctcggcactgctactactgcgcaagaaccccatattttacacaatgcaggcttaacagactaccacatcaagcaaaggcggatccttaatgatggttccagaggtgagacagtcacgatgtcaccctcgcttatttttcccagcccgagaatcaagactgcctacattgccctccaagcgtggaagcaagccatgctctcagaccccctgggacacacagccaactgggttggatccaatgtctgcaactacactggagtcttctgtgctgaagctctcgacgacccaacaatagaaacagtcgctggcatcgatctaaaccatgctgacattgccgggtacctcccagaagagcttggccatcttatattctccaactccaccacctactccagcatgagattgcctgttgccaccaattattgccatcatggggcaccacctccaccattttactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

169

Amino Acids

18.67

Weight (kDa)

6.1

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 390, 487
AciI CCGC 1 cut(s) 130
AclWI GGATC 4 cut(s) 127, 140, 279, 292
AcoI YGGCCR 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 484
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 326, 406
AluI AGCT 2 cut(s) 326, 406
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 4 cut(s) 127, 140, 279, 292
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 1 cut(s) 409
Asp718I GGTACC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 165, 167
AvaI CYCGRG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 2 cut(s) 132, 284
BanI GGYRCC 2 cut(s) 390, 487
BbsI GAAGAC 1 cut(s) 304
BccI CCATC 3 cut(s) 137, 420, 486
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 508
Bme1390I CCNGG 2 cut(s) 260, 388
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 5 cut(s) 134, 148, 286, 392, 489
BmrFI CCNGG 2 cut(s) 260, 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 327, 427
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 52, 258, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 281, 310
Bse3DI GCAATG 2 cut(s) 216, 381
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 52, 258, 259
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 216, 381
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 281, 310
BseSI GKGCMC 1 cut(s) 490
BseYI CCCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 2 cut(s) 390, 487
BshVI ATCGAT 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 4 cut(s) 16, 132, 284, 364
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 363
BspLI GGNNCC 5 cut(s) 134, 148, 286, 392, 489
BspPI GGATC 4 cut(s) 127, 140, 279, 292
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 390, 487
BsrDI GCAATG 2 cut(s) 216, 381
BsrI ACTGG 2 cut(s) 281, 310
BssECI CCNNGG 3 cut(s) 52, 258, 259
BssMI GATC 4 cut(s) 16, 132, 284, 364
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 163, 352
Bst6I CTCTTC 2 cut(s) 47, 396
BstAPI GCANNNNNTGC 1 cut(s) 244
BstC8I GCNNGC 3 cut(s) 100, 240, 358
BstDEI CTNAG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 19, 135, 287, 367
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 16, 132, 284, 364
BstMWI GCNNNNNNNGC 5 cut(s) 68, 218, 227, 244, 383
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 258, 386
BstSLI GKGCMC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 132, 284
BstYI RGATCY 2 cut(s) 132, 284
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 1 cut(s) 411
BsuTUI ATCGAT 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 303
Cac8I GCNNGC 3 cut(s) 100, 240, 358
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 391
CviAII CATG 4 cut(s) 244, 374, 448, 482
CviJI RGCY 7 cut(s) 102, 195, 242, 272, 326, 406, 411
CviKI_1 RGCY 7 cut(s) 102, 195, 242, 272, 326, 406, 411
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 250
DpnI GATC 4 cut(s) 18, 134, 286, 366
DpnII GATC 4 cut(s) 16, 132, 284, 364
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 47, 396
EarI CTCTTC 2 cut(s) 47, 396
EciI GGCGGA 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 247, 377, 451, 485
FaiI YATR 7 cut(s) 38, 84, 245, 375, 419, 449, 483
FaqI GGGAC 1 cut(s) 276
FatI CATG 4 cut(s) 243, 373, 447, 481
FbaI TGATCA 1 cut(s) 16
FspBI CTAG 1 cut(s) 508
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 327, 427
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 387
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 247, 377, 451, 485
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 201, 309
HpaII CCGG 1 cut(s) 387
HphI GGTGA 2 cut(s) 165, 167
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 150, 166, 205, 329
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 163, 352
HpyCH4V TGCA 2 cut(s) 98, 297
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 218, 227, 244, 383
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 4 cut(s) 247, 377, 451, 485
HspAI GCGC 1 cut(s) 71
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 16, 132, 284, 364
LguI GCTCTTC 1 cut(s) 396
LweI GCATC 1 cut(s) 369
MaeI CTAG 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 163, 171
MalI GATC 4 cut(s) 18, 134, 286, 366
MboI GATC 4 cut(s) 16, 132, 284, 364
MboII GAAGA 4 cut(s) 16, 34, 304, 413
MflI RGATCY 2 cut(s) 132, 284
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 1 cut(s) 469
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 262, 450
MnlI CCTC 6 cut(s) 62, 146, 187, 233, 404, 504
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 2 cut(s) 104, 138
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 2 cut(s) 260, 388
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 5 cut(s) 68, 218, 227, 244, 383
NciI CCSGG 1 cut(s) 388
NdeII GATC 4 cut(s) 16, 132, 284, 364
NlaIII CATG 4 cut(s) 247, 377, 451, 485
NlaIV GGNNCC 5 cut(s) 134, 148, 286, 392, 489
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 163, 171
NsbI TGCGCA 1 cut(s) 72
PasI CCCWGGG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 201
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 5 cut(s) 134, 148, 286, 392, 489
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 132, 284
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 104, 138
Sau3AI GATC 4 cut(s) 16, 132, 284, 364
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 2 cut(s) 260, 388
SduI GDGCHC 1 cut(s) 490
SetI ASST 6 cut(s) 157, 328, 396, 408, 440, 496
SfaNI GCATC 1 cut(s) 369
Sse9I AATT 1 cut(s) 469
SsiI CCGC 1 cut(s) 130
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 2 cut(s) 258, 386
TaaI ACNGT 2 cut(s) 163, 352
TaqI TCGA 2 cut(s) 330, 363
TasI AATT 1 cut(s) 469
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 104, 138
Tru9I TTAA 2 cut(s) 104, 138
TscAI CASTG 2 cut(s) 64, 310
TseFI GTSAC 2 cut(s) 163, 171
Tsp45I GTSAC 2 cut(s) 163, 171
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 64, 310
XspI CTAG 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.