Rmu_ssc0000412.1_g000003

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000412.1
OG0012723
Physical Location & Seq
Forward (+)
30507 .. 32078
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000412.1_g000003.1.cds

Sequence Viewer

Length: 1572 bp
atgaagagagagattgatcacactcgcattgttctcatactcttcttttgcctcggcactgctactactgcccaagaaccccatattttccacaatgcaggcttaacagactcccacatcaagcaaaggcggatccttaatgatggttccagaggtgagactgtcacgatgtcaccctcgcttatttttcccaacccgagaatcaagactgcctacattgccctccaagcatggaagcaagccatgctctcagaccctctgggacacacagccaactgggttggatccaatgtctgcaactacactggagtcttctgtgctgaagctctcgacgacccaacaacagaaacagtcgctggcatcgatttaaaccatgctgacattgccgggtacctcccagaagagcttggccatctttcagacattgcattgtttcacgtgaactccaatcgtttctgtggcactgtcccaaagagtttcagcaagttgaagcttcttcatgagcttgatctaagtaataaccggtttgctgggaaattccctctagttgttcttcaactgccagtacttaaataccttgacattcggttcaatgaatttgaaggtagaattcccaaggaactatttgataagcatcttgatgccatcttcctcaacgacaacagattcacctatgaactgccacataatttaggaaactcgccggtctcagttattgttcttgcaaacaataagttccacggatgtttaccggccagccttggcaacatgtccaagaacttaaacgagctgatccttactagaaatgggttgtactcctgtttgccagaggaaataggaatgctcaagaatcttactgtgttagatgtgagtcataatggcattttcggtgagttgccacacgcactaggtgaaatgttgagcttggaggagctgaatgtggctcataacaaccttacagggactataccagagagcatttgtgggcttccaaatctgaaaaaatttagctttgggtacaactttttcacaggtgagccaccagtgtgtttagatttggaagagtttgatgatagcaggaattgtttgcggcgtaggccaaagcagagatccatgttgcaatgtaaattatttttgtccaagtctgttggttgtagttcttttcgatgccaaccatcaccgccaccaccatcttctcccccgccgccgccacaaccacagcatgctcctccaccaccaccttctccactgccgccatccccaccacctccagtatactgcattcacgctccccctccccctccaccaaatttcctgccaccacctccaccaagtcctcactacaattcaccaccacccccgtcatcgtctccaccaaactctcctccgccacaatctcccccacccccatctccaccaacttctcccccatcaccatcttatccatccccgcctccaccaccaatttattctccaccaccccctttacctccttgtaaagaaccttctccacctccgtctccaccaccatgtctggaatattctccaactccaccacctactccagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

523

Amino Acids

57.13

Weight (kDa)

6.41

Isoelectric Point (pI)

80.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012723)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25550
fragaria_vesca FvH4_2g30240
malus_domestica MD08G1135200.v1.1 MD15G1114000.v1.1
prunus_persica Prupe.1G465200_v2.0.a1
pyrus_communis pycom08g11410 pycom15g10230
rosa_chinensis RchiOBHm_Chr6g0312631
rosa_laevigata RLG00000010309
rosa_multiflora Rmu_sc0002859.1_g000007 Rmu_sc0034244.1_g000001 Rmu_ssc0000412.1_g000003
rosa_roxburghii Rroxscaffold_7G00156630
rosa_rugosa Rorug06G0398000
rosa_samantha Rh6AG515300 Rh6BG524800 Rh6CG530200
rosa_wichuraiana Rw6G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 1275
AciI CCGC 9 cut(s) 130, 1090, 1181, 1202, 1205, 1208, 1253, 1388, 1451
AclWI GGATC 6 cut(s) 127, 140, 279, 292, 787, 1104
AcoI YGGCCR 2 cut(s) 409, 753
AcsI RAATTY 5 cut(s) 536, 596, 609, 1004, 1309
AcuI CTGAAG 1 cut(s) 342
AcvI CACGTG 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 911
AfaI GTAC 4 cut(s) 392, 567, 815, 1019
AflIII ACRYGT 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 4 cut(s) 490, 557, 592, 602
AleI CACNNNNGTG 1 cut(s) 1045
AluBI AGCT 8 cut(s) 326, 406, 493, 505, 790, 924, 934, 1011
AluI AGCT 8 cut(s) 326, 406, 493, 505, 790, 924, 934, 1011
Alw26I GTCTC 4 cut(s) 152, 712, 1374, 1524
AlwI GGATC 6 cut(s) 127, 140, 279, 292, 787, 1104
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 3 cut(s) 409, 753, 1097
ApoI RAATTY 5 cut(s) 536, 596, 609, 1004, 1309
AsiGI ACCGGT 1 cut(s) 522
Asp718I GGTACC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 9 cut(s) 165, 167, 661, 902, 923, 1046, 1170, 1341, 1425
AvaI CYCGRG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 2 cut(s) 132, 284
BanI GGYRCC 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 1489, 1521
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 304
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 4 cut(s) 152, 712, 1374, 1524
BfaI CTAG 3 cut(s) 545, 801, 908
BisI GCNGC 4 cut(s) 1091, 1205, 1208, 1253
BlsI GCNGC 4 cut(s) 1092, 1206, 1209, 1254
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 388
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 4 cut(s) 134, 148, 286, 392
BmrFI CCNGG 1 cut(s) 388
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 4 cut(s) 369, 631, 643, 1157
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 3 cut(s) 327, 1254, 1548
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 4 cut(s) 52, 615, 739, 760
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse118I RCCGGY 3 cut(s) 522, 703, 751
Bse1I ACTGG 5 cut(s) 281, 310, 563, 1043, 1271
Bse3DI GCAATG 4 cut(s) 216, 381, 423, 1127
Bse8I GATNNNNATC 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 4 cut(s) 52, 615, 739, 760
BseGI GGATG 3 cut(s) 749, 1256, 1445
BseJI GATNNNNATC 1 cut(s) 633
BseMI GCAATG 4 cut(s) 216, 381, 423, 1127
BseMII CTCAG 2 cut(s) 264, 723
BseNI ACTGG 5 cut(s) 281, 310, 563, 1043, 1271
BseRI GAGGAG 3 cut(s) 944, 1218, 1374
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 411, 755, 1099
BshNI GGYRCC 1 cut(s) 390
BshTI ACCGGT 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 4 cut(s) 387, 523, 704, 752
BslFI GGGAC 3 cut(s) 276, 452, 976
BsmAI GTCTC 4 cut(s) 152, 712, 1374, 1524
BsmBI CGTCTC 2 cut(s) 1374, 1524
BsmFI GGGAC 3 cut(s) 276, 452, 976
BsmI GAATGC 2 cut(s) 846, 1281
BsnI GGCC 3 cut(s) 411, 755, 1099
Bso31I GGTCTC 1 cut(s) 712
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
BspACI CCGC 9 cut(s) 130, 1090, 1181, 1202, 1205, 1208, 1253, 1388, 1451
BspANI GGCC 3 cut(s) 411, 755, 1099
BspCNI CTCAG 2 cut(s) 263, 722
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 4 cut(s) 134, 148, 286, 392
BspPI GGATC 6 cut(s) 127, 140, 279, 292, 787, 1104
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 4 cut(s) 216, 381, 423, 1127
BsrFI RCCGGY 3 cut(s) 522, 703, 751
BsrI ACTGG 5 cut(s) 281, 310, 563, 1043, 1271
BssAI RCCGGY 3 cut(s) 522, 703, 751
BssECI CCNNGG 4 cut(s) 52, 615, 739, 760
BssMI GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
BssNAI GTATAC 1 cut(s) 1276
BssT1I CCWWGG 2 cut(s) 615, 760
Bst1107I GTATAC 1 cut(s) 1276
Bst4CI ACNGT 4 cut(s) 163, 352, 466, 859
Bst6I CTCTTC 3 cut(s) 47, 396, 1056
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 5 cut(s) 100, 240, 358, 757, 1224
BstDEI CTNAG 3 cut(s) 250, 512, 709
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 3 cut(s) 749, 1256, 1445
BstKTI GATC 6 cut(s) 19, 135, 287, 511, 795, 1112
BstMAI GTCTC 4 cut(s) 152, 712, 1374, 1524
BstMBI GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
BstMWI GCNNNNNNNGC 6 cut(s) 68, 218, 227, 244, 383, 1096
BstNSI RCATGY 2 cut(s) 772, 1226
BstSCI CCNGG 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 3 cut(s) 132, 284, 1109
BstYI RGATCY 3 cut(s) 132, 284, 1109
BstZ17I GTATAC 1 cut(s) 1276
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 411, 755, 1099
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 3 cut(s) 749, 1256, 1445
BtsI GCAGTG 2 cut(s) 57, 1247
BtsIMutI CAGTG 5 cut(s) 57, 303, 462, 1050, 1247
Cac8I GCNNGC 5 cut(s) 100, 240, 358, 757, 1224
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 3 cut(s) 522, 703, 751
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 4 cut(s) 391, 566, 814, 1018
CspAI ACCGGT 1 cut(s) 522
CviAII CATG 9 cut(s) 231, 244, 374, 500, 769, 1114, 1223, 1530, 1569
CviQI GTAC 4 cut(s) 391, 566, 814, 1018
DdeI CTNAG 3 cut(s) 250, 512, 709
DpnI GATC 6 cut(s) 18, 134, 286, 510, 794, 1111
DpnII GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
DraI TTTAAA 1 cut(s) 369
DraIII CACNNNGTG 1 cut(s) 911
EaeI YGGCCR 2 cut(s) 409, 753
Eam1104I CTCTTC 3 cut(s) 47, 396, 1056
EarI CTCTTC 3 cut(s) 47, 396, 1056
EciI GGCGGA 2 cut(s) 145, 1377
Eco130I CCWWGG 2 cut(s) 615, 760
Eco31I GGTCTC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 342
Eco72I CACGTG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 609
EcoT14I CCWWGG 2 cut(s) 615, 760
ErhI CCWWGG 2 cut(s) 615, 760
Esp3I CGTCTC 2 cut(s) 1374, 1524
FaeI CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1226, 1533, 1572
FaqI GGGAC 3 cut(s) 276, 452, 976
FatI CATG 9 cut(s) 230, 243, 373, 499, 768, 1113, 1222, 1529, 1568
FauI CCCGC 2 cut(s) 1209, 1458
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 1275
Fnu4HI GCNGC 4 cut(s) 1091, 1205, 1208, 1253
FokI GGATG 3 cut(s) 756, 1243, 1432
Fsp4HI GCNGC 4 cut(s) 1091, 1205, 1208, 1253
FspBI CTAG 3 cut(s) 545, 801, 908
GluI GCNGC 4 cut(s) 1091, 1205, 1208, 1253
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 3 cut(s) 327, 1254, 1548
HaeIII GGCC 3 cut(s) 411, 755, 1099
HapII CCGG 4 cut(s) 387, 523, 704, 752
Hin1II CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1226, 1533, 1572
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 6 cut(s) 110, 201, 309, 666, 850, 871
HpaII CCGG 4 cut(s) 387, 523, 704, 752
HphI GGTGA 9 cut(s) 165, 167, 661, 902, 923, 1046, 1170, 1341, 1425
Hpy166II GTNNAC 3 cut(s) 442, 749, 1276
Hpy188I TCNGA 3 cut(s) 253, 421, 999
Hpy188III TCNNGA 8 cut(s) 150, 166, 205, 329, 500, 638, 847, 1535
Hpy8I GTNNAC 3 cut(s) 442, 749, 1276
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 3 cut(s) 596, 1251, 1515
HpyCH4III ACNGT 4 cut(s) 163, 352, 466, 859
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 6 cut(s) 98, 297, 428, 725, 1120, 1281
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 218, 227, 244, 383, 1096
HpyF3I CTNAG 3 cut(s) 250, 512, 709
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1226, 1533, 1572
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 931, 1231, 1294
LweI GCATC 4 cut(s) 369, 631, 643, 1157
MaeI CTAG 3 cut(s) 545, 801, 908
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 163, 171
MalI GATC 6 cut(s) 18, 134, 286, 510, 794, 1111
MboI GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
MboII GAAGA 9 cut(s) 16, 34, 304, 413, 488, 545, 640, 1073, 1185
MflI RGATCY 3 cut(s) 132, 284, 1109
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 104, 318, 880
MmeI TCCRAC 2 cut(s) 262, 1571
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MseI TTAA 5 cut(s) 104, 138, 368, 570, 782
MslI CAYNNNNRTG 3 cut(s) 639, 1045, 1528
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 4 cut(s) 387, 523, 704, 752
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 2 cut(s) 846, 1281
MwoI GCNNNNNNNGC 6 cut(s) 68, 218, 227, 244, 383, 1096
NciI CCSGG 1 cut(s) 388
NdeII GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
NlaIII CATG 9 cut(s) 234, 247, 377, 503, 772, 1117, 1226, 1533, 1572
NlaIV GGNNCC 4 cut(s) 134, 148, 286, 392
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 163, 171
NspI RCATGY 2 cut(s) 772, 1226
OliI CACNNNNGTG 1 cut(s) 1045
PaeI GCATGC 1 cut(s) 1226
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 2 cut(s) 846, 1281
PfeI GAWTC 3 cut(s) 201, 666, 850
PinAI ACCGGT 1 cut(s) 522
PkrI GCNGC 4 cut(s) 1092, 1206, 1209, 1254
PleI GAGTC 3 cut(s) 104, 317, 879
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 3 cut(s) 104, 317, 879
Ppu21I YACGTR 1 cut(s) 439
PscI ACATGT 1 cut(s) 768
PspCI CACGTG 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 134, 148, 286, 392
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 3 cut(s) 132, 284, 1109
RsaI GTAC 4 cut(s) 392, 567, 815, 1019
RsaNI GTAC 4 cut(s) 391, 566, 814, 1018
RseI CAYNNNNRTG 3 cut(s) 639, 1045, 1528
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 5 cut(s) 104, 138, 368, 570, 782
SatI GCNGC 4 cut(s) 1091, 1205, 1208, 1253
Sau3AI GATC 6 cut(s) 16, 132, 284, 508, 792, 1109
ScaI AGTACT 1 cut(s) 567
SchI GAGTC 3 cut(s) 104, 318, 880
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 4 cut(s) 369, 631, 643, 1157
SmiMI CAYNNNNRTG 3 cut(s) 639, 1045, 1528
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SphI GCATGC 1 cut(s) 1226
SsiI CCGC 9 cut(s) 130, 1090, 1181, 1202, 1205, 1208, 1253, 1388, 1451
SspI AATATT 1 cut(s) 1541
SspMI CTAG 3 cut(s) 545, 801, 908
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 2 cut(s) 615, 760
TaaI ACNGT 4 cut(s) 163, 352, 466, 859
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 330, 363, 1165
TatI WGTACW 2 cut(s) 565, 813
TauI GCSGC 4 cut(s) 1093, 1207, 1210, 1255
TfiI GAWTC 3 cut(s) 201, 666, 850
Tru1I TTAA 5 cut(s) 104, 138, 368, 570, 782
Tru9I TTAA 5 cut(s) 104, 138, 368, 570, 782
TscAI CASTG 5 cut(s) 64, 310, 469, 1050, 1254
TseFI GTSAC 2 cut(s) 163, 171
Tsp45I GTSAC 2 cut(s) 163, 171
TspDTI ATGAA 4 cut(s) 17, 488, 609, 690
TspGWI ACGGA 2 cut(s) 756, 1506
TspRI CASTG 5 cut(s) 64, 310, 469, 1050, 1254
XapI RAATTY 5 cut(s) 536, 596, 609, 1004, 1309
XceI RCATGY 2 cut(s) 772, 1226
XmiI GTMKAC 1 cut(s) 1275
XspI CTAG 3 cut(s) 545, 801, 908
ZrmI AGTACT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.