Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Reverse (-)

9403543 .. 9407306

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGTCTTGCGAGTTCTGCTATGATGAGTGATGGATACGGCGTAGAATATAGTGTGTCTAAGCAGCCACAATGTTCGATGGAAGATTCTCTTAGTTGCAAGCTAAAAGGAGATCTTCAGACTTTGGACGGGAAAAATACCCTATCAGGATCCTCTTCTGGTTCTAATACGAAGGGCTCGAAGACAAAACCAGAGAAATCAAGAAAGAAAATTATTTCTGTTGAATACCATGCTAATTCTTATGAAGATGGTGAAGAAATCCTTGCAGCTGAATCGTATGAAAGACATAAAGCTCAGGATGTGTGTTCATCAAGTGAAATCGTCACTAAATCATGCCTTAAAATTTCTGGCTCGAAGAAGCTTAGTCGTTCAGTTACTTGGGCCGATCAGAATGATGGCCGTGGTGATCTTTGTGAGGTTAGAAACAATGATAACGCAGCAGGTCCTAGCCTGTCTTCTAATGATATAGAGGATGTCAATAGTTTATCACGCCTTGCATTAGCAGAAGCCCTTGCTACGGCATTGAGCCAGGCTGCCGAAGCTGTTTCTTCGGGAAATTCAGATGCAAGTGATGCCACTGCAAAAGCTGGAATCATTTTGTTGCCCAGCACACATCAACTTGACGAAGAGGTTACTGAGGAACATAGTGAGGAGGAAATGACTGAAGAGGAACCAACTCTTCTCAAGTGGCCAAATAAGCCCGGGATTCCAGATTCTGATTTGTTTGACCGTGATCAATCGTGGTTTGATGGACCTCCAGAGGGCTTCAATCTCACATTATCAAATTTCGCTGTGATGTGGGATTCACTGTTTGGCTGGGTATCATCGTCCTCTCTGGCATACATATATGGGAAGGAAGAATCTGCTCATGAGGAGTTCTTATTGGTTAACGGGAAGGAGTACCCCCGGAGGATTATCATGGTAGATGGGCTTTCCTCAGAGATCAAGCAGACAATTGCTGGGTGCCTTGCCAGAGCTTTACCGAGAGTCGTCACTCATCTCAGGCTGCCAATAGCGATATCCGAGTTAGAAAAGGGACTGGGAAGCTTGTTGGAGACAATGTCGTTGACAGGAGCAGTTCCATCATTTAGGGTAAAAGAATGGCTAGTGATTGTTCTTCTTTTCTTGGATGCGTTGTCTGTATCACGTATCCCTCGGATTGCACCTTATATATCCAACAGAGACAAGATTTTGGAAGGAAGTGGAATTGGAAATGAAGAGTATGAGACAATGAAGGATATCCTGTTACCACTTGGCCGTGTTCCTCAGTTTGCTACCCGAAGCGGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

430

Amino Acids

46.68

Weight (kDa)

4.82

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	963
AciI	CCGC	1 cut(s)	1284
AclWI	GGATC	2 cut(s)	144, 157
AcoI	YGGCCR	3 cut(s)	397, 689, 1255
AcsI	RAATTY	3 cut(s)	342, 556, 784
AcuI	CTGAAG	2 cut(s)	101, 684
AfaI	GTAC	1 cut(s)	902
AfiI	CCNNNNNNNGG	4 cut(s)	517, 761, 1284, 1285
AgsI	TTSAA	2 cut(s)	224, 769
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	8 cut(s)	103, 269, 293, 361, 542, 587, 977, 1047
AluI	AGCT	8 cut(s)	103, 269, 293, 361, 542, 587, 977, 1047
Alw26I	GTCTC	3 cut(s)	1049, 1176, 1220
AlwI	GGATC	2 cut(s)	144, 157
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	4 cut(s)	381, 397, 689, 1255
ApeKI	GCWGC	5 cut(s)	64, 266, 437, 533, 1006
ApoI	RAATTY	3 cut(s)	342, 556, 784
AspS9I	GGNCC	3 cut(s)	381, 443, 752
AsuC2I	CCSGG	3 cut(s)	702, 703, 907
AsuHPI	GGTGA	2 cut(s)	263, 416
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	443, 752
BalI	TGGCCA	1 cut(s)	691
BamHI	GGATCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	188, 447
BbvI	GCAGC	5 cut(s)	76, 278, 449, 520, 993
BccI	CCATC	7 cut(s)	26, 73, 242, 389, 743, 920, 1090
BceAI	ACGGC	4 cut(s)	55, 384, 534, 1242
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	1 cut(s)	530
BciVI	GTATCC	2 cut(s)	29, 1160
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	3 cut(s)	702, 703, 907
BcoDI	GTCTC	3 cut(s)	1049, 1176, 1220
BfaI	CTAG	2 cut(s)	447, 1106
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	2 cut(s)	29, 1160
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	5 cut(s)	65, 267, 438, 534, 1007
BlsI	GCNGC	5 cut(s)	66, 268, 439, 535, 1008
Bme1390I	CCNGG	4 cut(s)	530, 702, 703, 907
Bme18I	GGWCC	2 cut(s)	443, 752
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	3 cut(s)	381, 443, 752
BmiI	GGNNCC	3 cut(s)	151, 672, 965
BmrFI	CCNGG	4 cut(s)	530, 702, 703, 907
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	3 cut(s)	553, 562, 1120
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	2 cut(s)	188, 447
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	3 cut(s)	702, 703, 907
BsaAI	YACGTR	1 cut(s)	1148
BsaJI	CCNNGG	4 cut(s)	400, 701, 905, 1154
BsaXI	ACNNNNNCTCC	2 cut(s)	1046, 1076
Bsc4I	CCNNNNNNNGG	4 cut(s)	517, 761, 1284, 1285
Bse1I	ACTGG	1 cut(s)	1044
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	4 cut(s)	400, 701, 905, 1154
BseGI	GGATG	3 cut(s)	304, 478, 1135
BseLI	CCNNNNNNNGG	4 cut(s)	517, 761, 1284, 1285
BseMII	CTCAG	5 cut(s)	308, 627, 951, 1015, 1280
BseNI	ACTGG	1 cut(s)	1044
BseRI	GAGGAG	2 cut(s)	665, 887
BseXI	GCAGC	5 cut(s)	76, 278, 449, 520, 993
BseYI	CCCAGC	3 cut(s)	605, 816, 959
BshFI	GGCC	4 cut(s)	383, 399, 691, 1257
BshNI	GGYRCC	1 cut(s)	963
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	702, 907
BslFI	GGGAC	1 cut(s)	1050
BslI	CCNNNNNNNGG	4 cut(s)	517, 761, 1284, 1285
BsmAI	GTCTC	3 cut(s)	1049, 1176, 1220
BsmFI	GGGAC	1 cut(s)	1050
BsnI	GGCC	4 cut(s)	383, 399, 691, 1257
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
BspACI	CCGC	1 cut(s)	1284
BspANI	GGCC	4 cut(s)	383, 399, 691, 1257
BspCNI	CTCAG	5 cut(s)	307, 628, 950, 1014, 1279
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	151, 672, 965
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	144, 157
BspT107I	GGYRCC	1 cut(s)	963
BsrI	ACTGG	1 cut(s)	1044
BssECI	CCNNGG	4 cut(s)	400, 701, 905, 1154
BssMI	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	731, 810
Bst6I	CTCTTC	5 cut(s)	160, 621, 660, 684, 1212
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBAI	YACGTR	1 cut(s)	1148
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	8 cut(s)	60, 92, 294, 362, 636, 937, 1001, 1266
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	304, 478, 1135
BstKTI	GATC	6 cut(s)	115, 152, 388, 409, 736, 945
BstMAI	GTCTC	3 cut(s)	1049, 1176, 1220
BstMBI	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 539, 572, 697
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	4 cut(s)	528, 700, 701, 905
BstV1I	GCAGC	5 cut(s)	76, 278, 449, 520, 993
BstV2I	GAAGAC	2 cut(s)	188, 447
BstX2I	RGATCY	2 cut(s)	112, 149
BstYI	RGATCY	2 cut(s)	112, 149
BsuI	GTATCC	2 cut(s)	29, 1160
BsuRI	GGCC	4 cut(s)	383, 399, 691, 1257
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	304, 478, 1135
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	576, 806
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	101
CaiI	CAGNNNCTG	1 cut(s)	716
CciI	TCATGA	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	381, 443, 752
Cfr9I	CCCGGG	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	901
CviAII	CATG	4 cut(s)	230, 333, 869, 919
CviQI	GTAC	1 cut(s)	901
DdeI	CTNAG	8 cut(s)	60, 92, 294, 362, 636, 937, 1001, 1266
DpnI	GATC	6 cut(s)	114, 151, 387, 408, 735, 944
DpnII	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
EaeI	YGGCCR	3 cut(s)	397, 689, 1255
Eam1104I	CTCTTC	5 cut(s)	160, 621, 660, 684, 1212
EarI	CTCTTC	5 cut(s)	160, 621, 660, 684, 1212
Eco24I	GRGCYC	1 cut(s)	179
Eco32I	GATATC	2 cut(s)	1020, 1240
Eco47I	GGWCC	2 cut(s)	443, 752
Eco57I	CTGAAG	2 cut(s)	101, 684
Eco88I	CYCGRG	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	528
EcoRV	GATATC	2 cut(s)	1020, 1240
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	4 cut(s)	233, 336, 872, 922
FalI	AAGNNNNNCTT	6 cut(s)	75, 107, 99, 131, 246, 278
FaqI	GGGAC	1 cut(s)	1050
FatI	CATG	4 cut(s)	229, 332, 868, 918
FauI	CCCGC	1 cut(s)	1277
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	5 cut(s)	65, 267, 438, 534, 1007
FokI	GGATG	3 cut(s)	311, 485, 1142
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	5 cut(s)	65, 267, 438, 534, 1007
FspBI	CTAG	2 cut(s)	447, 1106
GluI	GCNGC	5 cut(s)	65, 267, 438, 534, 1007
GsaI	CCCAGC	3 cut(s)	609, 820, 963
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	4 cut(s)	383, 399, 691, 1257
HapII	CCGG	2 cut(s)	702, 907
Hin1II	CATG	4 cut(s)	233, 336, 872, 922
HincII	GTYRAC	2 cut(s)	889, 1068
HindII	GTYRAC	2 cut(s)	889, 1068
HindIII	AAGCTT	2 cut(s)	359, 1045
HinfI	GANTC	8 cut(s)	86, 272, 591, 706, 713, 803, 860, 987
HpaI	GTTAAC	1 cut(s)	889
HpaII	CCGG	2 cut(s)	702, 907
HphI	GGTGA	2 cut(s)	263, 416
Hpy166II	GTNNAC	2 cut(s)	889, 1068
Hpy188I	TCNGA	7 cut(s)	120, 390, 562, 718, 940, 1024, 1158
Hpy188III	TCNNGA	7 cut(s)	147, 201, 296, 552, 710, 758, 869
Hpy8I	GTNNAC	2 cut(s)	889, 1068
HpyAV	CCTTC	5 cut(s)	166, 847, 889, 1190, 1228
HpyCH4III	ACNGT	2 cut(s)	731, 810
HpyCH4IV	ACGT	1 cut(s)	1147
HpyCH4V	TGCA	6 cut(s)	99, 266, 497, 566, 581, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 539, 572, 697
HpyF3I	CTNAG	8 cut(s)	60, 92, 294, 362, 636, 937, 1001, 1266
HpySE526I	ACGT	1 cut(s)	1147
Hsp92II	CATG	4 cut(s)	233, 336, 872, 922
Ksp22I	TGATCA	1 cut(s)	733
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
LmnI	GCTCC	1 cut(s)	1073
Lsp1109I	GCAGC	5 cut(s)	76, 278, 449, 520, 993
LweI	GCATC	3 cut(s)	553, 562, 1120
MaeI	CTAG	2 cut(s)	447, 1106
MaeII	ACGT	1 cut(s)	1147
MaeIII	GTNAC	5 cut(s)	322, 373, 631, 991, 1245
MalI	GATC	6 cut(s)	114, 151, 387, 408, 735, 944
MboI	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	2 cut(s)	112, 149
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	691
MluCI	AATT	7 cut(s)	210, 235, 342, 556, 784, 954, 1206
MluNI	TGGCCA	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	996
MmeI	TCCRAC	2 cut(s)	1032, 1200
Mox20I	TGGCCA	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	691
MseI	TTAA	2 cut(s)	339, 888
Msp20I	TGGCCA	1 cut(s)	691
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	702, 907
MspR9I	CCNGG	4 cut(s)	530, 702, 703, 907
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	4 cut(s)	17, 539, 572, 697
NciI	CCSGG	3 cut(s)	702, 703, 907
NdeII	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
NlaIII	CATG	4 cut(s)	233, 336, 872, 922
NlaIV	GGNNCC	3 cut(s)	151, 672, 965
NmuCI	GTSAC	2 cut(s)	322, 991
PagI	TCATGA	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	7 cut(s)	86, 272, 591, 706, 713, 803, 860
PflFI	GACNNNGTC	1 cut(s)	1060
PkrI	GCNGC	5 cut(s)	66, 268, 439, 535, 1008
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
Ppu21I	YACGTR	1 cut(s)	1148
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	528
PspFI	CCCAGC	3 cut(s)	605, 816, 959
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	3 cut(s)	151, 672, 965
PspPI	GGNCC	3 cut(s)	381, 443, 752
PspPPI	RGGWCCY	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	112, 149
PsyI	GACNNNGTC	1 cut(s)	1060
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	902
RsaNI	GTAC	1 cut(s)	901
SaqAI	TTAA	2 cut(s)	339, 888
SatI	GCNGC	5 cut(s)	65, 267, 438, 534, 1007
Sau3AI	GATC	6 cut(s)	112, 149, 385, 406, 733, 942
Sau96I	GGNCC	3 cut(s)	381, 443, 752
SchI	GAGTC	1 cut(s)	996
ScrFI	CCNGG	4 cut(s)	530, 702, 703, 907
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	3 cut(s)	553, 562, 1120
SinI	GGWCC	2 cut(s)	443, 752
SmaI	CCCGGG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	210, 235, 342, 556, 784, 954, 1206
SsiI	CCGC	1 cut(s)	1284
SspMI	CTAG	2 cut(s)	447, 1106
StyD4I	CCNGG	4 cut(s)	528, 700, 701, 905
TaaI	ACNGT	2 cut(s)	731, 810
TaiI	ACGT	1 cut(s)	1150
TaqI	TCGA	3 cut(s)	77, 179, 353
TasI	AATT	7 cut(s)	210, 235, 342, 556, 784, 954, 1206
TfiI	GAWTC	7 cut(s)	86, 272, 591, 706, 713, 803, 860
Tru1I	TTAA	2 cut(s)	339, 888
Tru9I	TTAA	2 cut(s)	339, 888
TscAI	CASTG	2 cut(s)	583, 813
TseFI	GTSAC	2 cut(s)	322, 991
TseI	GCWGC	5 cut(s)	64, 266, 437, 533, 1006
Tsp45I	GTSAC	2 cut(s)	322, 991
TspDTI	ATGAA	5 cut(s)	258, 294, 297, 1230, 1247
TspMI	CCCGGG	1 cut(s)	701
TspRI	CASTG	2 cut(s)	583, 813
Tth111I	GACNNNGTC	1 cut(s)	1060
VpaK11BI	GGWCC	2 cut(s)	443, 752
XapI	RAATTY	3 cut(s)	342, 556, 784
XmaI	CCCGGG	1 cut(s)	701
XspI	CTAG	2 cut(s)	447, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.