Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000384.1

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Reverse (-)

55672 .. 59558

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000384.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

atggaaaagcacgagcatcagaatccatcgaagtcagtgaacgacgcagtgtacaagctccagctggcactcctcgacggcgtcaaaaccctagaccacctctacttagccggctccataatctcccgctccgactacaacgacgtcgttacggagcgatccatcgccgacctatgcggctaccctctctgctccaatgccctaccttccgaagcttcccgttcccgcaagggtcactatcgcatttcgctcaaggagcacaaggtgtacgatctccgagagacgaagctctactgctcctccaactgcgtgatcgatagcaaggcgtttgctctgagcttgagcgaggagaggtgtgatatcttggatttcggaaaggtcgagagggttttggggcaatttggggaaaaagatgaacaaggcaagaaggagattggggatttggggatttctaagttgaagattgaagaaaagagtgagacttatagtgggaaattggaggactgggttggtccttccaatgccattgaaggatatgttcccaaaaaagatagggtttccaagccgttgggttcgaaaaagagcaaacaagggtccaaagggaaagatacgaagccgagtggtggtgggaagcaattaattttgaatgatatggacttcatgagtacactattagcttgtgatgaatatagtgtgtccaaaatgccaccaagtgtagcggggaatagtgttgatactacgttaaaggaaccaaaaggaaaagttggcggcaaagattcagagagcggatttagtgtgttggaaacctcggctgctcctaataagagtgaagtgggtgtgatggatgttggggatttaggtatgtctaggttgaagattgaagagaaagaggaatcctttgttggtaaggcagagaaatcgagtgaggctagactgaggtcttctctcaaacattcagggacaaagaaacttagtcgctctgttacttgggctgacgaaaagattgatagtaccgggaggagaaatctttgtgaggtgagagacatggaagatggaattgaaaatcttggtgcatttggcagcttgcacaaaccttctacatcaaatgaagctggttcctcttttaattgggttgataagacgattgatagtactaagagtgaaaatatttgtgaggttagagaaatgcaagatgcaaaagatgttcctgaggtattaggcagttcagtcctgcaagataatgaatggtttgagtcggcagaagcctgtgcatcagcattgagtcaggcagccagcgctgttgcaactggagaatctgatactaatgatgctgtgtcaaaagccgggattattatattgccacatccagatggtgtggatgaagaagagtccatagtggatgatgtgtatgaagaagattccatagaggatagtgtggatgaagaagagtctacagaggatgttgacatgcttgaaccagaacatgctgtttcaaagtggccaggaaagcccgaaagttctcagtttgatttatttaaccctgaggattcttggtttgatgctccaccagatggtttcaatttaactttatctccttttgcaacaatgtggaatgcactctttacatggataacatcatctacattggcttatatatatggaaaggatgacagttcccatgaagagtttctgtatgtcaatgggagaagttatccccataagattgtgttggcagatggtcggtcttcagaaatcaagctaactgtgggtgaatctctctctcgggctctaccagaagttgttgctgaactagggctaccagtatccagtttagagaaaggaatgggcttcatgttgaatacaatgtcctttattgaggcgctaccagcattcagaatgaaacagtggcaagtgattgctcttcttttcattgagggcctctctgtttgtaggatcccgacacttacttctcgcatgacaaatagaagggtactgattcagaaggtgctggatggtgcccgtataagtgtagaagagtacgagattatgaaggatttcctaataccgcttggccgagcgcctcaattctcatcccagagtggtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

702

Amino Acids

77.11

Weight (kDa)

4.86

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	2015
AccB7I	CCANNNNNTGG	1 cut(s)	1571
AccBSI	CCGCTC	2 cut(s)	129, 786
AccI	GTMKAC	1 cut(s)	1451
AciI	CCGC	7 cut(s)	127, 177, 226, 719, 768, 786, 2066
AclWI	GGATC	3 cut(s)	153, 1948, 1961
AcoI	YGGCCR	2 cut(s)	1499, 2071
AcuI	CTGAAG	1 cut(s)	1731
AcyI	GRCGYC	2 cut(s)	81, 144
AdeI	CACNNNGTG	2 cut(s)	265, 713
AfaI	GTAC	7 cut(s)	53, 269, 667, 1012, 1153, 1992, 2039
AfeI	AGCGCT	1 cut(s)	1297
AfiI	CCNNNNNNNGG	2 cut(s)	623, 1571
AjnI	CCWGG	1 cut(s)	1501
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 677, 1083, 1112, 1759
AluI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 677, 1083, 1112, 1759
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	275, 473, 1035
AlwI	GGATC	3 cut(s)	153, 1948, 1961
Ama87I	CYCGRG	1 cut(s)	1782
Aor51HI	AGCGCT	1 cut(s)	1297
AoxI	GGCC	3 cut(s)	1499, 1936, 2071
ApeKI	GCWGC	3 cut(s)	812, 1080, 1289
AseI	ATTAAT	1 cut(s)	638
Asp700I	GAANNNNTTC	2 cut(s)	1686, 2054
AspLEI	GCGC	3 cut(s)	1298, 1882, 2080
AspS9I	GGNCC	3 cut(s)	512, 594, 1936
AsuC2I	CCSGG	2 cut(s)	1015, 1345
AsuHPI	GGTGA	2 cut(s)	1048, 1781
AsuII	TTCGAA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	1782
AvaII	GGWCC	2 cut(s)	512, 594
AxyI	CCTNAGG	2 cut(s)	1209, 1542
BaeGI	GKGCMC	1 cut(s)	2020
BalI	TGGCCA	1 cut(s)	1501
BamHI	GGATCC	1 cut(s)	1953
BanI	GGYRCC	1 cut(s)	2015
BanII	GRGCYC	1 cut(s)	1789
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	933, 1737
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	799, 1092, 1301
BccI	CCATC	8 cut(s)	34, 170, 835, 1046, 1364, 1565, 1730, 2006
BceAI	ACGGC	2 cut(s)	94, 550
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	1 cut(s)	1503
BciVI	GTATCC	1 cut(s)	1834
BcnI	CCSGG	2 cut(s)	1015, 1345
BcoDI	GTCTC	3 cut(s)	275, 473, 1035
BfaI	CTAG	4 cut(s)	92, 867, 930, 1811
BfmI	CTRYAG	1 cut(s)	1452
BfoI	RGCGCY	3 cut(s)	1299, 1883, 2081
BfuI	GTATCC	1 cut(s)	1834
BisI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
BlsI	GCNGC	5 cut(s)	179, 770, 814, 1082, 1291
BmcAI	AGTACT	1 cut(s)	1153
Bme1390I	CCNGG	3 cut(s)	1015, 1345, 1503
Bme18I	GGWCC	2 cut(s)	512, 594
BmeT110I	CYCGRG	1 cut(s)	1782
BmgT120I	GGNCC	3 cut(s)	512, 594, 1936
BmiI	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
BmrFI	CCNGG	3 cut(s)	1015, 1345, 1503
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	5 cut(s)	25, 1183, 1280, 1318, 1549
BmuI	ACTGGG	1 cut(s)	514
BoxI	GACNNNNGTC	1 cut(s)	937
BpiI	GAAGAC	2 cut(s)	933, 1737
BplI	GAGNNNNNCTC	4 cut(s)	928, 960, 1925, 1957
BpmI	CTGGAG	2 cut(s)	44, 1329
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	236, 361
BpuMI	CCSGG	2 cut(s)	1015, 1345
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	81, 144
BsaJI	CCNNGG	1 cut(s)	807
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 1576, 1606
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 1571
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	4 cut(s)	509, 1312, 1820, 1827
Bse21I	CCTNAGG	2 cut(s)	1209, 1542
BseBI	CCWGG	1 cut(s)	1503
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	807
BseGI	GGATG	9 cut(s)	850, 1363, 1384, 1405, 1444, 1465, 1672, 2017, 2090
BseLI	CCNNNNNNNGG	2 cut(s)	623, 1571
BseMII	CTCAG	5 cut(s)	326, 926, 1200, 1533, 1535
BseNI	ACTGG	4 cut(s)	509, 1312, 1820, 1827
BseRI	GAGGAG	4 cut(s)	62, 289, 362, 1033
BseSI	GKGCMC	1 cut(s)	2020
BseXI	GCAGC	3 cut(s)	799, 1092, 1301
BshFI	GGCC	3 cut(s)	1501, 1938, 2073
BshNI	GGYRCC	1 cut(s)	2015
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	1782
BsiSI	CCGG	3 cut(s)	111, 1014, 1344
BslFI	GGGAC	1 cut(s)	973
BslI	CCNNNNNNNGG	2 cut(s)	623, 1571
BsmAI	GTCTC	3 cut(s)	275, 473, 1035
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	973
BsmI	GAATGC	2 cut(s)	1618, 1889
BsnI	GGCC	3 cut(s)	1501, 1938, 2073
BsoBI	CYCGRG	1 cut(s)	1782
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	261, 1789, 2020
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	158, 271, 312, 1953
BspACI	CCGC	7 cut(s)	127, 177, 226, 719, 768, 786, 2066
BspANI	GGCC	3 cut(s)	1501, 1938, 2073
BspCNI	CTCAG	5 cut(s)	327, 927, 1201, 1534, 1534
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
BspPI	GGATC	3 cut(s)	153, 1948, 1961
BspQI	GCTCTTC	1 cut(s)	1926
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	2015
BsrBI	CCGCTC	2 cut(s)	129, 786
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	509, 1312, 1820, 1827
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	807
BssMI	GATC	4 cut(s)	158, 271, 312, 1953
BssNI	GRCGYC	2 cut(s)	81, 144
BssSI	CACGAG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	1503
Bst4CI	ACNGT	3 cut(s)	1673, 1765, 1905
Bst6I	CTCTTC	6 cut(s)	876, 1380, 1440, 1677, 1926, 2028
BstACI	GRCGYC	2 cut(s)	81, 144
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	4 cut(s)	66, 112, 1085, 1294
BstDEI	CTNAG	9 cut(s)	106, 335, 453, 935, 971, 1155, 1209, 1521, 1542
BstF5I	GGATG	9 cut(s)	850, 1363, 1384, 1405, 1444, 1465, 1672, 2017, 2090
BstH2I	RGCGCY	3 cut(s)	1299, 1883, 2081
BstHHI	GCGC	3 cut(s)	1298, 1882, 2080
BstKTI	GATC	4 cut(s)	161, 274, 315, 1956
BstMAI	GTCTC	3 cut(s)	275, 473, 1035
BstMBI	GATC	4 cut(s)	158, 271, 312, 1953
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 1295, 1507, 1886
BstNI	CCWGG	1 cut(s)	1503
BstNSI	RCATGY	2 cut(s)	1471, 1487
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	3 cut(s)	1013, 1343, 1501
BstSFI	CTRYAG	1 cut(s)	1452
BstSLI	GKGCMC	1 cut(s)	2020
BstV1I	GCAGC	3 cut(s)	799, 1092, 1301
BstV2I	GAAGAC	2 cut(s)	933, 1737
BstX2I	RGATCY	1 cut(s)	1953
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	1953
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	1209, 1542
BsuI	GTATCC	1 cut(s)	1834
BsuRI	GGCC	3 cut(s)	1501, 1938, 2073
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	9 cut(s)	850, 1363, 1384, 1405, 1444, 1465, 1672, 2017, 2090
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	42, 54, 1910
Cac8I	GCNNGC	4 cut(s)	66, 112, 1085, 1294
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	3 cut(s)	1298, 1882, 2080
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	512, 594, 1936
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	2 cut(s)	53, 70
Csp6I	GTAC	7 cut(s)	52, 268, 666, 1011, 1152, 1991, 2038
CviAII	CATG	8 cut(s)	661, 1045, 1468, 1484, 1626, 1679, 1852, 1975
CviQI	GTAC	7 cut(s)	52, 268, 666, 1011, 1152, 1991, 2038
DdeI	CTNAG	9 cut(s)	106, 335, 453, 935, 971, 1155, 1209, 1521, 1542
DpnI	GATC	4 cut(s)	160, 273, 314, 1955
DpnII	GATC	4 cut(s)	158, 271, 312, 1953
DraIII	CACNNNGTG	2 cut(s)	265, 713
EaeI	YGGCCR	2 cut(s)	1499, 2071
Eam1104I	CTCTTC	6 cut(s)	876, 1380, 1440, 1677, 1926, 2028
EarI	CTCTTC	6 cut(s)	876, 1380, 1440, 1677, 1926, 2028
Eco24I	GRGCYC	1 cut(s)	1789
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	512, 594
Eco47III	AGCGCT	1 cut(s)	1297
Eco57I	CTGAAG	1 cut(s)	1731
Eco81I	CCTNAGG	2 cut(s)	1209, 1542
Eco88I	CYCGRG	1 cut(s)	1782
EcoO109I	RGGNCCY	1 cut(s)	1936
EcoRII	CCWGG	1 cut(s)	1501
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	1789
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
FaqI	GGGAC	1 cut(s)	973
FatI	CATG	8 cut(s)	660, 1044, 1467, 1483, 1625, 1678, 1851, 1974
FauI	CCCGC	3 cut(s)	134, 233, 712
FblI	GTMKAC	1 cut(s)	1451
Fnu4HI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
FokI	GGATG	9 cut(s)	857, 1350, 1391, 1412, 1451, 1472, 1679, 2024, 2077
FriOI	GRGCYC	1 cut(s)	1789
Fsp4HI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
FspBI	CTAG	4 cut(s)	92, 867, 930, 1811
GlaI	GCGC	3 cut(s)	1297, 1881, 2079
GluI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
GsuI	CTGGAG	2 cut(s)	44, 1329
HaeII	RGCGCY	3 cut(s)	1299, 1883, 2081
HaeIII	GGCC	3 cut(s)	1501, 1938, 2073
HapII	CCGG	3 cut(s)	111, 1014, 1344
HgaI	GACGC	2 cut(s)	53, 70
HhaI	GCGC	3 cut(s)	1298, 1882, 2080
Hin1I	GRCGYC	2 cut(s)	81, 144
Hin1II	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
Hin6I	GCGC	3 cut(s)	1296, 1880, 2078
HinP1I	GCGC	3 cut(s)	1296, 1880, 2078
HincII	GTYRAC	1 cut(s)	1465
HindII	GTYRAC	1 cut(s)	1465
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	3 cut(s)	111, 1014, 1344
HphI	GGTGA	2 cut(s)	1048, 1781
Hpy166II	GTNNAC	6 cut(s)	40, 52, 268, 668, 1452, 1465
Hpy188III	TCNNGA	5 cut(s)	382, 661, 1208, 1367, 1957
Hpy8I	GTNNAC	6 cut(s)	40, 52, 268, 668, 1452, 1465
Hpy99I	CGWCG	4 cut(s)	47, 80, 146, 149
HpyAV	CCTTC	8 cut(s)	216, 421, 524, 525, 1104, 1980, 1996, 2044
HpyCH4III	ACNGT	3 cut(s)	1673, 1765, 1905
HpyCH4IV	ACGT	2 cut(s)	144, 740
HpyCH4V	TGCA	9 cut(s)	1073, 1087, 1189, 1196, 1234, 1271, 1304, 1601, 1616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 1295, 1507, 1886
HpyF3I	CTNAG	9 cut(s)	106, 335, 453, 935, 971, 1155, 1209, 1521, 1542
HpySE526I	ACGT	2 cut(s)	144, 740
Hsp92I	GRCGYC	2 cut(s)	81, 144
Hsp92II	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
HspAI	GCGC	3 cut(s)	1296, 1880, 2078
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	158, 271, 312, 1953
LguI	GCTCTTC	1 cut(s)	1926
LmnI	GCTCC	9 cut(s)	63, 119, 134, 154, 197, 256, 302, 820, 1567
Lsp1109I	GCAGC	3 cut(s)	799, 1092, 1301
LweI	GCATC	5 cut(s)	25, 1183, 1280, 1318, 1549
MaeI	CTAG	4 cut(s)	92, 867, 930, 1811
MaeII	ACGT	2 cut(s)	144, 740
MaeIII	GTNAC	3 cut(s)	148, 233, 982
MalI	GATC	4 cut(s)	160, 273, 314, 1955
MbiI	CCGCTC	2 cut(s)	129, 786
MboI	GATC	4 cut(s)	158, 271, 312, 1953
MflI	RGATCY	1 cut(s)	1953
MhlI	GDGCHC	3 cut(s)	261, 1789, 2020
MlsI	TGGCCA	1 cut(s)	1501
MluCI	AATT	8 cut(s)	398, 494, 635, 639, 1056, 1126, 1579, 2084
MluNI	TGGCCA	1 cut(s)	1501
MlyI	GAGTC	4 cut(s)	1262, 1291, 1397, 1457
MmeI	TCCRAC	3 cut(s)	156, 327, 780
Mox20I	TGGCCA	1 cut(s)	1501
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	1686, 2054
MscI	TGGCCA	1 cut(s)	1501
MseI	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
MslI	CAYNNNNRTG	1 cut(s)	1368
Msp20I	TGGCCA	1 cut(s)	1501
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	3 cut(s)	111, 1014, 1344
MspR9I	CCNGG	3 cut(s)	1015, 1345, 1503
Mva1269I	GAATGC	2 cut(s)	1618, 1889
MvaI	CCWGG	1 cut(s)	1503
MwoI	GCNNNNNNNGC	4 cut(s)	256, 1295, 1507, 1886
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	2 cut(s)	1015, 1345
NdeII	GATC	4 cut(s)	158, 271, 312, 1953
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
NlaIV	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
NmeAIII	GCCGAG	3 cut(s)	642, 788, 2099
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	2 cut(s)	1471, 1487
NspV	TTCGAA	1 cut(s)	575
PagI	TCATGA	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	1926
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	2 cut(s)	1618, 1889
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	1686, 2054
PfeI	GAWTC	8 cut(s)	22, 776, 893, 1313, 1418, 1547, 1772, 1996
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	1571
PkrI	GCNGC	5 cut(s)	179, 770, 814, 1082, 1291
PleI	GAGTC	4 cut(s)	1261, 1290, 1396, 1456
PpsI	GAGTC	4 cut(s)	1261, 1290, 1396, 1456
PshAI	GACNNNNGTC	1 cut(s)	937
PshBI	ATTAAT	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	1501
PspGI	CCWGG	1 cut(s)	1501
PspN4I	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
PspPI	GGNCC	3 cut(s)	512, 594, 1936
PsrI	GAACNNNNNNTAC	2 cut(s)	1800, 1832
PsuI	RGATCY	1 cut(s)	1953
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	7 cut(s)	53, 269, 667, 1012, 1153, 1992, 2039
RsaNI	GTAC	7 cut(s)	52, 268, 666, 1011, 1152, 1991, 2038
RseI	CAYNNNNRTG	1 cut(s)	1368
SapI	GCTCTTC	1 cut(s)	1926
SaqAI	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
SatI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
Sau3AI	GATC	4 cut(s)	158, 271, 312, 1953
Sau96I	GGNCC	3 cut(s)	512, 594, 1936
ScaI	AGTACT	1 cut(s)	1153
SchI	GAGTC	4 cut(s)	1262, 1291, 1397, 1457
ScrFI	CCNGG	3 cut(s)	1015, 1345, 1503
SduI	GDGCHC	3 cut(s)	261, 1789, 2020
SfaNI	GCATC	5 cut(s)	25, 1183, 1280, 1318, 1549
SfcI	CTRYAG	1 cut(s)	1452
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	2 cut(s)	512, 594
SmiMI	CAYNNNNRTG	1 cut(s)	1368
SmlI	CTYRAG	2 cut(s)	251, 340
SmoI	CTYRAG	2 cut(s)	251, 340
Sse9I	AATT	8 cut(s)	398, 494, 635, 639, 1056, 1126, 1579, 2084
SsiI	CCGC	7 cut(s)	127, 177, 226, 719, 768, 786, 2066
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	4 cut(s)	92, 867, 930, 1811
StyD4I	CCNGG	3 cut(s)	1013, 1343, 1501
TaaI	ACNGT	3 cut(s)	1673, 1765, 1905
TaiI	ACGT	2 cut(s)	147, 743
TaqI	TCGA	6 cut(s)	29, 75, 315, 381, 575, 920
TaqII	GACCGA	1 cut(s)	1731
TasI	AATT	8 cut(s)	398, 494, 635, 639, 1056, 1126, 1579, 2084
TatI	WGTACW	3 cut(s)	51, 665, 1151
TauI	GCSGC	2 cut(s)	180, 771
TfiI	GAWTC	8 cut(s)	22, 776, 893, 1313, 1418, 1547, 1772, 1996
Tru1I	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
Tru9I	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
TscAI	CASTG	3 cut(s)	42, 54, 1910
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	812, 1080, 1289
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	42, 54, 1910
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	1571
VpaK11BI	GGWCC	2 cut(s)	512, 594
VspI	ATTAAT	1 cut(s)	638
XceI	RCATGY	2 cut(s)	1471, 1487
XmiI	GTMKAC	1 cut(s)	1451
XmnI	GAANNNNTTC	2 cut(s)	1686, 2054
XspI	CTAG	4 cut(s)	92, 867, 930, 1811
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.