Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Reverse (-)

6858630 .. 6862406

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG088800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGGAAAAGCACGAGCATCAGAATCCATCGAAGTCAGTGAACGACGCAGTGTACAAGCTCCAGCTGGCACTCCTCGACGGCGTCAAAACCCTAGACCACCTCTACTTAGCCGGCTCCATAATCTCCCGCTCCGACTACAACGACGTCGTCACGGAGCGATCCATCGCCGACCTATGCGGCTACCCTCTCTGCTCCAATGCCCTACCTTCCGAAGCTTCCCGTTCCCGCAAGGGTCACTATCGCATTTCGCTCAAGGAGCACAAGGTGTACGATCTCCGAGAGACGAAGCTCTACTGCTCCTCCAAGTGCGTGATCGATAGCAAGGCGTTTGCTCTGAGCTTGAGCGAGGAGAGGTGTGATATCTTGGATTTCGGAAAGGTCGAGAGGGTTTTGGGGCAATTTGGGGAGAAAGATGAACAAGGCAAGAAGGAGATTGGGGATTTGGGGATTTCTAAGTTGAAGATTGAAGAAAAGAGTGAGACGTATAGTGGGAAATTGGAGGACTGGGTTGGTCCTTCCAATGCCATTGAAGGATATGTTCCCAAAAAAGATAGGGGTTCGAAAAAGAGCAAACAAGGGTCCAAAGGGAAAGATACGAAGCCGAGTGGTGGTGGGAATCAATTAATTTTGAATGATATGGACTTCATGAGTACACTATTAGCTTGTGATGAATATAGTGTGTCCAAAATGCCACCAACTGTAGCGGAGAATAGTGTTGATACTACGTTAAAGGAACCAAAAGGAAAAGTTGGCGGCAAAGATTCAGAGAGCGGATTTAGTGTGTTGGAAACCTCGGCTGCTCCTAATAAGAGTGAAGTGGGTGTGATGGATGTTGGGGATTTAGGTATGTCTAGGTTGAAGATTGAAGAGAAAGAGGAATCCTTTGTTGGTAAGGCAGAGAAATCGAGTGAGGCTAGACTGAGGTCTTCTCTCAAACATTCAGGGACAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGACGAAAAGATTGATAGTACCGGGAGGAGAAATCTTTGTGAGGTGAGAGACATGGAAGATGGAATTGAAAATCCTGGTGCATTTGGCAGCTTGCACAAACCTTCTACATCAAATGAAGCTGGTTCCTCTTTTAATTGGGTTGATAAGACGATTGATAGTACTAAGAGTGAAAATATTTGTGAGGTTAGAGAAATGCAAGATGCAAAAGATGTTCCTGAGGTATTAGGCAGTTCAGTCCTGCAAGATAATGAATGGTTTGAGTCGGCAGAAGCCTGTGCATCAGCATTGAGTCAGGCAGCCAGCGCTGTTGCAACTGGAGAATCTGATACTAATGATGCTGTGTCAAAAGCCGGGATTATTATATTGCCACATCCAGATGGTGTGGATGAAGAAGAGTCCATAGTGGATGATGTGTATGAAGAAGATTCCGTAGAGGATTGTGTGGATGAAGAAGAGTCTACAGAGGATGTTGACATGCTTGAACCAGAGCATGCTGTTTCAAAGTGGCCAGGAAAGCCCGAAAGTTCACAGTTTGATTTATTTAACCCTGAGGATTCTTGGTTTGATGCTCCACCAGATGGTTTCAATTTAACTTTATCTCCTTTTGCAACAATGTGGAATGCACTCTTTACATGGATAACATCATCTACATTGGCTTATATATATGGAAAGGATGACAGTTCCCATGAAGAGTTTCTCTATGTCAATGGGAGAAGTTATCCCCATAAGATTGTGTTGGCAGATGGTCGGTCTTCAGAAATCAAGCTAACTGTGGGTGAATCTCTCTCTCGGGCTCTACCAGAAGTTGTTGCTGAACTAGGGCTACCAGTATCCAGTTTAGAGAAAGGAATGGGCTTCATGTTGAATACAATGTCCTTTATTGAGGCGCTACCGGCATTCAGAATGAAACAGTGGCAAGTGATTGCTCTTCTTTTCATTGAGGGCCTCTCTGTTTGTAGGATCCCGGCACTTACTTCTCGCATGACAAATAGAAGGGTACTGATTCAGAAGGTGCTGGATGGTGCCCGTATAAGTGTAGAAGAGTACGAGATTATGAAGGATTTCCTAATACCGCTTGGCCGAGCGCCTCAATTCTCATCCCAGAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

697

Amino Acids

76.63

Weight (kDa)

4.82

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	40 - 115	1.2e-22	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	2000
AccB7I	CCANNNNNTGG	1 cut(s)	1556
AccBSI	CCGCTC	2 cut(s)	129, 771
AccI	GTMKAC	1 cut(s)	1436
AciI	CCGC	7 cut(s)	127, 177, 226, 704, 753, 771, 2051
AclWI	GGATC	3 cut(s)	153, 1933, 1946
AcoI	YGGCCR	2 cut(s)	1484, 2056
AcuI	CTGAAG	1 cut(s)	1716
AcyI	GRCGYC	2 cut(s)	81, 144
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	7 cut(s)	53, 269, 652, 997, 1138, 1977, 2024
AfeI	AGCGCT	1 cut(s)	1282
AfiI	CCNNNNNNNGG	2 cut(s)	608, 1556
AjnI	CCWGG	2 cut(s)	1051, 1486
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AluBI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 662, 1068, 1097, 1744
AluI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 662, 1068, 1097, 1744
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	275, 473, 1020
AlwI	GGATC	3 cut(s)	153, 1933, 1946
Ama87I	CYCGRG	1 cut(s)	1767
Aor51HI	AGCGCT	1 cut(s)	1282
AoxI	GGCC	3 cut(s)	1484, 1921, 2056
ApeKI	GCWGC	3 cut(s)	797, 1065, 1274
AseI	ATTAAT	1 cut(s)	623
Asp700I	GAANNNNTTC	2 cut(s)	1671, 2039
AspLEI	GCGC	3 cut(s)	1283, 1867, 2065
AspS9I	GGNCC	3 cut(s)	512, 579, 1921
AsuC2I	CCSGG	3 cut(s)	1000, 1330, 1943
AsuHPI	GGTGA	2 cut(s)	1033, 1766
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	1767
AvaII	GGWCC	2 cut(s)	512, 579
AxyI	CCTNAGG	2 cut(s)	1194, 1527
BaeGI	GKGCMC	1 cut(s)	2005
BalI	TGGCCA	1 cut(s)	1486
BamHI	GGATCC	1 cut(s)	1938
BanI	GGYRCC	1 cut(s)	2000
BanII	GRGCYC	1 cut(s)	1774
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	918, 1722
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	784, 1077, 1286
BccI	CCATC	8 cut(s)	34, 170, 820, 1031, 1349, 1550, 1715, 1991
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	885, 919
BciT130I	CCWGG	2 cut(s)	1053, 1488
BciVI	GTATCC	1 cut(s)	1819
BcnI	CCSGG	3 cut(s)	1000, 1330, 1943
BcoDI	GTCTC	3 cut(s)	275, 473, 1020
BfaI	CTAG	4 cut(s)	92, 852, 915, 1796
BfmI	CTRYAG	2 cut(s)	699, 1437
BfoI	RGCGCY	3 cut(s)	1284, 1868, 2066
BfuI	GTATCC	1 cut(s)	1819
BisI	GCNGC	5 cut(s)	178, 754, 798, 1066, 1275
BlsI	GCNGC	5 cut(s)	179, 755, 799, 1067, 1276
BmcAI	AGTACT	1 cut(s)	1138
Bme1390I	CCNGG	5 cut(s)	1000, 1053, 1330, 1488, 1943
Bme18I	GGWCC	2 cut(s)	512, 579
BmeT110I	CYCGRG	1 cut(s)	1767
BmgT120I	GGNCC	3 cut(s)	512, 579, 1921
BmiI	GGNNCC	6 cut(s)	115, 580, 735, 1102, 1940, 2002
BmrFI	CCNGG	5 cut(s)	1000, 1053, 1330, 1488, 1943
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	5 cut(s)	25, 1168, 1265, 1303, 1534
BmuI	ACTGGG	1 cut(s)	514
BoxI	GACNNNNGTC	1 cut(s)	922
BpiI	GAAGAC	2 cut(s)	918, 1722
BplI	GAGNNNNNCTC	4 cut(s)	913, 945, 1910, 1942
BpmI	CTGGAG	2 cut(s)	44, 1314
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	236, 361
BpuMI	CCSGG	3 cut(s)	1000, 1330, 1943
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	81, 144
BsaJI	CCNNGG	1 cut(s)	792
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 1561, 1591
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 1556
Bse118I	RCCGGY	2 cut(s)	110, 1870
Bse1I	ACTGG	4 cut(s)	509, 1297, 1805, 1812
Bse21I	CCTNAGG	2 cut(s)	1194, 1527
BseBI	CCWGG	2 cut(s)	1053, 1488
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	9 cut(s)	835, 1348, 1369, 1390, 1429, 1450, 1657, 2002, 2075
BseLI	CCNNNNNNNGG	2 cut(s)	608, 1556
BseMII	CTCAG	4 cut(s)	326, 911, 1185, 1518
BseNI	ACTGG	4 cut(s)	509, 1297, 1805, 1812
BseRI	GAGGAG	4 cut(s)	62, 289, 362, 1018
BseSI	GKGCMC	1 cut(s)	2005
BseXI	GCAGC	3 cut(s)	784, 1077, 1286
BshFI	GGCC	3 cut(s)	1486, 1923, 2058
BshNI	GGYRCC	1 cut(s)	2000
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	1767
BsiSI	CCGG	5 cut(s)	111, 999, 1329, 1871, 1943
BslFI	GGGAC	1 cut(s)	958
BslI	CCNNNNNNNGG	2 cut(s)	608, 1556
BsmAI	GTCTC	3 cut(s)	275, 473, 1020
BsmBI	CGTCTC	2 cut(s)	275, 473
BsmFI	GGGAC	1 cut(s)	958
BsmI	GAATGC	2 cut(s)	1603, 1874
BsnI	GGCC	3 cut(s)	1486, 1923, 2058
BsoBI	CYCGRG	1 cut(s)	1767
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	3 cut(s)	261, 1774, 2005
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	158, 271, 312, 1938
BspACI	CCGC	7 cut(s)	127, 177, 226, 704, 753, 771, 2051
BspANI	GGCC	3 cut(s)	1486, 1923, 2058
BspCNI	CTCAG	4 cut(s)	327, 912, 1186, 1519
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	6 cut(s)	115, 580, 735, 1102, 1940, 2002
BspPI	GGATC	3 cut(s)	153, 1933, 1946
BspQI	GCTCTTC	1 cut(s)	1911
BspT104I	TTCGAA	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	2000
BsrBI	CCGCTC	2 cut(s)	129, 771
BsrFI	RCCGGY	2 cut(s)	110, 1870
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	509, 1297, 1805, 1812
BssAI	RCCGGY	2 cut(s)	110, 1870
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	4 cut(s)	158, 271, 312, 1938
BssNI	GRCGYC	2 cut(s)	81, 144
BssSI	CACGAG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	1053, 1488
Bst4CI	ACNGT	5 cut(s)	700, 1509, 1658, 1750, 1890
Bst6I	CTCTTC	6 cut(s)	861, 1365, 1425, 1662, 1911, 2013
BstACI	GRCGYC	2 cut(s)	81, 144
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	5 cut(s)	66, 112, 1070, 1279, 1470
BstDEI	CTNAG	8 cut(s)	106, 335, 453, 920, 956, 1140, 1194, 1527
BstF5I	GGATG	9 cut(s)	835, 1348, 1369, 1390, 1429, 1450, 1657, 2002, 2075
BstH2I	RGCGCY	3 cut(s)	1284, 1868, 2066
BstHHI	GCGC	3 cut(s)	1283, 1867, 2065
BstKTI	GATC	4 cut(s)	161, 274, 315, 1941
BstMAI	GTCTC	3 cut(s)	275, 473, 1020
BstMBI	GATC	4 cut(s)	158, 271, 312, 1938
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 1280, 1492, 1871
BstNI	CCWGG	2 cut(s)	1053, 1488
BstNSI	RCATGY	2 cut(s)	1456, 1472
BstPAI	GACNNNNGTC	1 cut(s)	922
BstSCI	CCNGG	5 cut(s)	998, 1051, 1328, 1486, 1941
BstSFI	CTRYAG	2 cut(s)	699, 1437
BstSLI	GKGCMC	1 cut(s)	2005
BstV1I	GCAGC	3 cut(s)	784, 1077, 1286
BstV2I	GAAGAC	2 cut(s)	918, 1722
BstX2I	RGATCY	1 cut(s)	1938
BstYI	RGATCY	1 cut(s)	1938
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	1194, 1527
BsuI	GTATCC	1 cut(s)	1819
BsuRI	GGCC	3 cut(s)	1486, 1923, 2058
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	9 cut(s)	835, 1348, 1369, 1390, 1429, 1450, 1657, 2002, 2075
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	42, 54, 1895
Cac8I	GCNNGC	5 cut(s)	66, 112, 1070, 1279, 1470
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	3 cut(s)	1283, 1867, 2065
Cfr10I	RCCGGY	2 cut(s)	110, 1870
Cfr13I	GGNCC	3 cut(s)	512, 579, 1921
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	2 cut(s)	53, 70
Csp6I	GTAC	7 cut(s)	52, 268, 651, 996, 1137, 1976, 2023
CviAII	CATG	8 cut(s)	646, 1030, 1453, 1469, 1611, 1664, 1837, 1960
CviQI	GTAC	7 cut(s)	52, 268, 651, 996, 1137, 1976, 2023
DdeI	CTNAG	8 cut(s)	106, 335, 453, 920, 956, 1140, 1194, 1527
DpnI	GATC	4 cut(s)	160, 273, 314, 1940
DpnII	GATC	4 cut(s)	158, 271, 312, 1938
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	1484, 2056
Eam1104I	CTCTTC	6 cut(s)	861, 1365, 1425, 1662, 1911, 2013
EarI	CTCTTC	6 cut(s)	861, 1365, 1425, 1662, 1911, 2013
Eco24I	GRGCYC	1 cut(s)	1774
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	512, 579
Eco47III	AGCGCT	1 cut(s)	1282
Eco57I	CTGAAG	1 cut(s)	1716
Eco81I	CCTNAGG	2 cut(s)	1194, 1527
Eco88I	CYCGRG	1 cut(s)	1767
EcoO109I	RGGNCCY	1 cut(s)	1921
EcoRII	CCWGG	2 cut(s)	1051, 1486
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	1774
Esp3I	CGTCTC	2 cut(s)	275, 473
FaeI	CATG	8 cut(s)	649, 1033, 1456, 1472, 1614, 1667, 1840, 1963
FaqI	GGGAC	1 cut(s)	958
FatI	CATG	8 cut(s)	645, 1029, 1452, 1468, 1610, 1663, 1836, 1959
FauI	CCCGC	2 cut(s)	134, 233
FblI	GTMKAC	1 cut(s)	1436
Fnu4HI	GCNGC	5 cut(s)	178, 754, 798, 1066, 1275
FokI	GGATG	9 cut(s)	842, 1335, 1376, 1397, 1436, 1457, 1664, 2009, 2062
FriOI	GRGCYC	1 cut(s)	1774
Fsp4HI	GCNGC	5 cut(s)	178, 754, 798, 1066, 1275
FspBI	CTAG	4 cut(s)	92, 852, 915, 1796
GlaI	GCGC	3 cut(s)	1282, 1866, 2064
GluI	GCNGC	5 cut(s)	178, 754, 798, 1066, 1275
GsuI	CTGGAG	2 cut(s)	44, 1314
HaeII	RGCGCY	3 cut(s)	1284, 1868, 2066
HaeIII	GGCC	3 cut(s)	1486, 1923, 2058
HapII	CCGG	5 cut(s)	111, 999, 1329, 1871, 1943
HgaI	GACGC	2 cut(s)	53, 70
HhaI	GCGC	3 cut(s)	1283, 1867, 2065
Hin1I	GRCGYC	2 cut(s)	81, 144
Hin1II	CATG	8 cut(s)	649, 1033, 1456, 1472, 1614, 1667, 1840, 1963
Hin6I	GCGC	3 cut(s)	1281, 1865, 2063
HinP1I	GCGC	3 cut(s)	1281, 1865, 2063
HincII	GTYRAC	1 cut(s)	1450
HindII	GTYRAC	1 cut(s)	1450
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	5 cut(s)	111, 999, 1329, 1871, 1943
HphI	GGTGA	2 cut(s)	1033, 1766
Hpy166II	GTNNAC	7 cut(s)	40, 52, 268, 653, 1437, 1450, 1505
Hpy188III	TCNNGA	4 cut(s)	382, 646, 1193, 1352
Hpy8I	GTNNAC	7 cut(s)	40, 52, 268, 653, 1437, 1450, 1505
Hpy99I	CGWCG	4 cut(s)	47, 80, 146, 149
HpyAV	CCTTC	8 cut(s)	216, 421, 524, 525, 1089, 1965, 1981, 2029
HpyCH4III	ACNGT	5 cut(s)	700, 1509, 1658, 1750, 1890
HpyCH4IV	ACGT	3 cut(s)	144, 482, 725
HpyCH4V	TGCA	9 cut(s)	1058, 1072, 1174, 1181, 1219, 1256, 1289, 1586, 1601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 1280, 1492, 1871
HpyF3I	CTNAG	8 cut(s)	106, 335, 453, 920, 956, 1140, 1194, 1527
HpySE526I	ACGT	3 cut(s)	144, 482, 725
Hsp92I	GRCGYC	2 cut(s)	81, 144
Hsp92II	CATG	8 cut(s)	649, 1033, 1456, 1472, 1614, 1667, 1840, 1963
HspAI	GCGC	3 cut(s)	1281, 1865, 2063
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	158, 271, 312, 1938
LguI	GCTCTTC	1 cut(s)	1911
LmnI	GCTCC	9 cut(s)	63, 119, 134, 154, 197, 256, 302, 805, 1552
Lsp1109I	GCAGC	3 cut(s)	784, 1077, 1286
LweI	GCATC	5 cut(s)	25, 1168, 1265, 1303, 1534
MaeI	CTAG	4 cut(s)	92, 852, 915, 1796
MaeII	ACGT	3 cut(s)	144, 482, 725
MaeIII	GTNAC	3 cut(s)	148, 233, 967
MalI	GATC	4 cut(s)	160, 273, 314, 1940
MbiI	CCGCTC	2 cut(s)	129, 771
MboI	GATC	4 cut(s)	158, 271, 312, 1938
MflI	RGATCY	1 cut(s)	1938
MhlI	GDGCHC	3 cut(s)	261, 1774, 2005
MlsI	TGGCCA	1 cut(s)	1486
MluCI	AATT	8 cut(s)	398, 494, 620, 624, 1041, 1111, 1564, 2069
MluNI	TGGCCA	1 cut(s)	1486
MlyI	GAGTC	4 cut(s)	1247, 1276, 1382, 1442
MmeI	TCCRAC	2 cut(s)	156, 765
Mox20I	TGGCCA	1 cut(s)	1486
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	1671, 2039
MscI	TGGCCA	1 cut(s)	1486
MseI	TTAA	6 cut(s)	623, 728, 1110, 1521, 1568, 2092
MslI	CAYNNNNRTG	1 cut(s)	1353
Msp20I	TGGCCA	1 cut(s)	1486
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	5 cut(s)	111, 999, 1329, 1871, 1943
MspR9I	CCNGG	5 cut(s)	1000, 1053, 1330, 1488, 1943
Mva1269I	GAATGC	2 cut(s)	1603, 1874
MvaI	CCWGG	2 cut(s)	1053, 1488
MwoI	GCNNNNNNNGC	4 cut(s)	256, 1280, 1492, 1871
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	3 cut(s)	1000, 1330, 1943
NdeII	GATC	4 cut(s)	158, 271, 312, 1938
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	8 cut(s)	649, 1033, 1456, 1472, 1614, 1667, 1840, 1963
NlaIV	GGNNCC	6 cut(s)	115, 580, 735, 1102, 1940, 2002
NmeAIII	GCCGAG	3 cut(s)	627, 773, 2084
NmuCI	GTSAC	2 cut(s)	148, 233
NspI	RCATGY	2 cut(s)	1456, 1472
NspV	TTCGAA	1 cut(s)	560
PaeI	GCATGC	1 cut(s)	1472
PagI	TCATGA	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	1911
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	2 cut(s)	1603, 1874
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	1671, 2039
PfeI	GAWTC	9 cut(s)	22, 616, 761, 878, 1298, 1403, 1532, 1757, 1981
PflFI	GACNNNGTC	2 cut(s)	80, 146
PflMI	CCANNNNNTGG	1 cut(s)	1556
PkrI	GCNGC	5 cut(s)	179, 755, 799, 1067, 1276
PleI	GAGTC	4 cut(s)	1246, 1275, 1381, 1441
PpsI	GAGTC	4 cut(s)	1246, 1275, 1381, 1441
PshAI	GACNNNNGTC	1 cut(s)	922
PshBI	ATTAAT	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	1051, 1486
PspGI	CCWGG	2 cut(s)	1051, 1486
PspN4I	GGNNCC	6 cut(s)	115, 580, 735, 1102, 1940, 2002
PspPI	GGNCC	3 cut(s)	512, 579, 1921
PsrI	GAACNNNNNNTAC	2 cut(s)	1785, 1817
PsuI	RGATCY	1 cut(s)	1938
PsyI	GACNNNGTC	2 cut(s)	80, 146
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	7 cut(s)	53, 269, 652, 997, 1138, 1977, 2024
RsaNI	GTAC	7 cut(s)	52, 268, 651, 996, 1137, 1976, 2023
RseI	CAYNNNNRTG	1 cut(s)	1353
SapI	GCTCTTC	1 cut(s)	1911
SaqAI	TTAA	6 cut(s)	623, 728, 1110, 1521, 1568, 2092
SatI	GCNGC	5 cut(s)	178, 754, 798, 1066, 1275
Sau3AI	GATC	4 cut(s)	158, 271, 312, 1938
Sau96I	GGNCC	3 cut(s)	512, 579, 1921
ScaI	AGTACT	1 cut(s)	1138
SchI	GAGTC	4 cut(s)	1247, 1276, 1382, 1442
ScrFI	CCNGG	5 cut(s)	1000, 1053, 1330, 1488, 1943
SduI	GDGCHC	3 cut(s)	261, 1774, 2005
SfaNI	GCATC	5 cut(s)	25, 1168, 1265, 1303, 1534
SfcI	CTRYAG	2 cut(s)	699, 1437
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	2 cut(s)	512, 579
SmiMI	CAYNNNNRTG	1 cut(s)	1353
SmlI	CTYRAG	2 cut(s)	251, 340
SmoI	CTYRAG	2 cut(s)	251, 340
SphI	GCATGC	1 cut(s)	1472
Sse9I	AATT	8 cut(s)	398, 494, 620, 624, 1041, 1111, 1564, 2069
SsiI	CCGC	7 cut(s)	127, 177, 226, 704, 753, 771, 2051
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	4 cut(s)	92, 852, 915, 1796
StyD4I	CCNGG	5 cut(s)	998, 1051, 1328, 1486, 1941
TaaI	ACNGT	5 cut(s)	700, 1509, 1658, 1750, 1890
TaiI	ACGT	3 cut(s)	147, 485, 728
TaqI	TCGA	6 cut(s)	29, 75, 315, 381, 560, 905
TaqII	GACCGA	1 cut(s)	1716
TasI	AATT	8 cut(s)	398, 494, 620, 624, 1041, 1111, 1564, 2069
TatI	WGTACW	3 cut(s)	51, 650, 1136
TauI	GCSGC	2 cut(s)	180, 756
TfiI	GAWTC	9 cut(s)	22, 616, 761, 878, 1298, 1403, 1532, 1757, 1981
Tru1I	TTAA	6 cut(s)	623, 728, 1110, 1521, 1568, 2092
Tru9I	TTAA	6 cut(s)	623, 728, 1110, 1521, 1568, 2092
TscAI	CASTG	3 cut(s)	42, 54, 1895
TseFI	GTSAC	2 cut(s)	148, 233
TseI	GCWGC	3 cut(s)	797, 1065, 1274
Tsp45I	GTSAC	2 cut(s)	148, 233
TspGWI	ACGGA	2 cut(s)	167, 1396
TspRI	CASTG	3 cut(s)	42, 54, 1895
Tth111I	GACNNNGTC	2 cut(s)	80, 146
Van91I	CCANNNNNTGG	1 cut(s)	1556
VpaK11BI	GGWCC	2 cut(s)	512, 579
VspI	ATTAAT	1 cut(s)	623
XceI	RCATGY	2 cut(s)	1456, 1472
XmiI	GTMKAC	1 cut(s)	1436
XmnI	GAANNNNTTC	2 cut(s)	1671, 2039
XspI	CTAG	4 cut(s)	92, 852, 915, 1796
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.