Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Forward (+)

28269563 .. 28273588

Gene Structure 4026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1202100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGATGGGGAAGAGCCAACCGCCGCCGCCGCAGCAGCAGCCCATGTCAGTGAAAGACACAGTGTACAAGCTCCAACTCGCTCTCCTCGAAGGCGTCAAAACCCTTGACCAACTCTACTTGGCCGGCTCAATCATCTCCCGCTCCGATTACAGCGACGTCGTCACGGAGCGCACCATAGCCGACCACTGCGGCTACCCTCTTTGCCCCAGTGCCTTGCCTCCGGAATCCTCCCACCCCCGCAAGGGCCACTATCGCATTTCACTCAAGGAGCACAAGGTCTACGACCTTCATGAGACCTACATGTACTGCTCCTCGAGCTGTCTCATCGGAAGCAAGGCTTTTGCTCAGAGTTTGAGCGAGGAGAGGTGCGATGTCCTGGATTATGGCAAGGTTGAGAAGGTCTTGAGGGCTTTTGGGGATGTGGGTTTGGACAAAGAGGAAGTGGGATTGGGGGAGACTCGGGATTTGGGAATTTCGAAGTTGAAGATCGAAGAAAAGAGCGAAGCGGAGATTGGGGATTTGGGGATTTCGAAGTTGAAGATTGAAGAAAAGAGTGAAGTGCAGTTAGGGGATGTGGGCGTGGTTGGTCCCTCTAATGCTATTGAGGGCTATGTTCCACACAATCAGCGGATATCCAAGCCATTGGGTTCGAAAAAGAACAAAAAAGGGTCCAAAGGTAAAGAAGCGAAAACGAGTGGCGGGAAAGATATGAGCTTTAATGAGATGGATTTCATGAGTTGTATAATCGCTAGTGATGAATACAGTGTGTCCAAAATCCCACCAAGTTCTGGGGAGAATGGTTGTGAAACTAAGTTTAACGAATCAGAAGAAAAAGTCGCTCGTATTAAGAATGATTCTGAAAAGAAATCCAAACAATCAAGAGGGGGAAAAAGTAAGATTTCCGAGGAAGATATTGTTGGCATTCGAGAGGCGCCTTCAACTTCAGAGACTTCTCAAACTTTTTTGATTAGAAGTACTAAAGAAGCAAGAGAGGAATTCCCTGGTGATAAGGAGAAATCAAATGAGCCAAAGCTAAGATCCTCTCTTAAACCTTCAGGGGCAAAAAAACTTAGTCGCTCTGTCACTTGGGCTGACGAGAAGGTGGAACATAGAATGAATGGTTATGATACATTGGGCGGTATCCACAAACCTTTGCTTAAACCTTCAGCAGAAAATGAAGTCGGTTGCTCTGTTACCTGGTCTGATGAGAAGATTGATAGCACTAAGAGTAAAAATGTTTGCGAGGTTAGAGAAGTGCAAGGTGCAAAAGAGGGTTCTGGTGTATTAGGGAATTTGGAATTGCTAGATAATGAACGTTTGGAATCCGCCGAATTCTGTGCCATGGCATTGAGGCAGGCAGCAGAAGCTGTTGCATCTGGAGATTCTGATGTTAATGGTGCTGTTTCGAGTGCTGGAATTATTTTATTGCCACGTCCAGATGGTGTGGATGAAGATGAGCCTACTGAGGATGTTGACATGCTTGAACCAGAACAAGCTCCTCTGCAGCAAAGAAACCCTGGAATTCCAAATTTTGATTTGTTTGACTCTGAGGATACTTGGTTTGATGATCCGCCAGAGGGTTTCAACTTAACTTTATCACCTTTTTTAACAATGTGGAATTCACTCTTTACATGGATAACATCATCTACACTAGCATATATATATGGGAGGGATGAAAGCTTTCATGAAGAATTTCTCTCTATTAATGGGAAAGAGTATTCCCGTAAGATTGTCTTGGTTGGTGGCCACTCTTCTGAAATCAAGAAAACTCTGGCTGAATCTCTTGCTCGGACTCTACCAGGAGTTGTTTCCCAACTTAGGCTTGCAACACCAATATCTAGTTTGGAGCAAGAAATGAGCTGCATGTTGGAGACGATGACTTTTGTTGATGCACTACCAGCTTTCAGAATGAAACAATGGAAAGTGGTTGTTCTTCTTCTCCTTGAGGGTCTCTCTGTTTGCAGGATTCCTGCACTCGGTCCTCACATGCCGGATAGGAGGACACTGTTTCACAAGGTGCTGGATGGTTCCCAGATAACTGCAGAACAATACGAGCTTATGAAGGATCATATATTACCCCTAGGCCGAGCACCCGAATTCTCAGCTCAGAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

707

Amino Acids

77.73

Weight (kDa)

5.21

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	44 - 119	4.5e-21	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	220
AclI	AACGTT	1 cut(s)	1315
AclWI	GGATC	3 cut(s)	1032, 1562, 2073
AcoI	YGGCCR	2 cut(s)	120, 1744
AcsI	RAATTY	9 cut(s)	471, 995, 1291, 1331, 1521, 1528, 1618, 1691, 2096
AcuI	CTGAAG	3 cut(s)	927, 1038, 1149
AcyI	GRCGYC	3 cut(s)	93, 156, 932
AdeI	CACNNNGTG	1 cut(s)	2017
AfaI	GTAC	3 cut(s)	65, 305, 976
AfiI	CCNNNNNNNGG	6 cut(s)	241, 242, 788, 1577, 1818, 1976
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	6 cut(s)	484, 538, 545, 939, 1484, 1585
AjiI	CACGTC	1 cut(s)	1433
AjnI	CCWGG	5 cut(s)	375, 1000, 1196, 1516, 1798
AjuI	GAANNNNNNNTTGG	4 cut(s)	495, 527, 900, 932
Alw21I	GWGCWC	2 cut(s)	273, 2092
Alw26I	GTCTC	6 cut(s)	287, 326, 449, 941, 1865, 1955
AlwI	GGATC	3 cut(s)	1032, 1562, 2073
AlwNI	CAGNNNCTG	1 cut(s)	1367
Ama87I	CYCGRG	2 cut(s)	313, 459
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	4 cut(s)	120, 244, 1744, 2083
ApeKI	GCWGC	6 cut(s)	31, 34, 37, 1358, 1504, 1860
ApoI	RAATTY	9 cut(s)	471, 995, 1291, 1331, 1521, 1528, 1618, 1691, 2096
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AseI	ATTAAT	1 cut(s)	1704
Asp700I	GAANNNNTTC	2 cut(s)	1680, 1692
AspA2I	CCTAGG	1 cut(s)	2080
AspLEI	GCGC	2 cut(s)	171, 934
AspS9I	GGNCC	4 cut(s)	244, 587, 669, 1979
AsuHPI	GGTGA	2 cut(s)	1016, 1590
AsuII	TTCGAA	3 cut(s)	476, 530, 650
AvaI	CYCGRG	2 cut(s)	313, 459
AvaII	GGWCC	3 cut(s)	587, 669, 1979
AvrII	CCTAGG	1 cut(s)	2080
BalI	TGGCCA	1 cut(s)	1746
BanI	GGYRCC	1 cut(s)	931
Bbv12I	GWGCWC	2 cut(s)	273, 2092
BbvI	GCAGC	6 cut(s)	43, 46, 49, 1370, 1516, 1847
BccI	CCATC	3 cut(s)	718, 1433, 2018
BcgI	CGANNNNNNTGC	2 cut(s)	1319, 1353
BciT130I	CCWGG	5 cut(s)	377, 1002, 1198, 1518, 1800
BciVI	GTATCC	2 cut(s)	1151, 1546
BcoDI	GTCTC	6 cut(s)	287, 326, 449, 941, 1865, 1955
BfaI	CTAG	5 cut(s)	750, 1304, 1652, 1839, 2081
BfmI	CTRYAG	2 cut(s)	1502, 2040
BfoI	RGCGCY	1 cut(s)	935
BfuI	GTATCC	2 cut(s)	1151, 1546
BlnI	CCTAGG	1 cut(s)	2080
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	5 cut(s)	377, 1002, 1198, 1518, 1800
Bme18I	GGWCC	3 cut(s)	587, 669, 1979
BmeT110I	CYCGRG	2 cut(s)	313, 459
BmgBI	CACGTC	1 cut(s)	1433
BmgT120I	GGNCC	4 cut(s)	244, 587, 669, 1979
BmiI	GGNNCC	4 cut(s)	589, 670, 933, 2029
BmrFI	CCNGG	5 cut(s)	377, 1002, 1198, 1518, 1800
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	1382, 1879
BmuI	ACTGGG	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	1937, 1969
BpmI	CTGGAG	1 cut(s)	1398
Bpu14I	TTCGAA	3 cut(s)	476, 530, 650
BpuEI	CTTGAG	3 cut(s)	248, 424, 1964
BsaHI	GRCGYC	3 cut(s)	93, 156, 932
BsaI	GGTCTC	2 cut(s)	287, 1955
BsaJI	CCNNGG	5 cut(s)	903, 1000, 1341, 1516, 2080
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	6 cut(s)	241, 242, 788, 1577, 1818, 1976
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	5 cut(s)	377, 1002, 1198, 1518, 1800
BseDI	CCNNGG	5 cut(s)	903, 1000, 1341, 1516, 2080
BseGI	GGATG	6 cut(s)	424, 577, 1453, 1474, 1678, 2029
BseLI	CCNNNNNNNGG	6 cut(s)	241, 242, 788, 1577, 1818, 1976
BseMII	CTCAG	5 cut(s)	359, 1455, 1539, 2115, 2120
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	4 cut(s)	74, 301, 374, 1488
BseXI	GCAGC	6 cut(s)	43, 46, 49, 1370, 1516, 1847
BsgI	GTGCAG	2 cut(s)	581, 1956
BshFI	GGCC	4 cut(s)	122, 246, 1746, 2085
BshNI	GGYRCC	1 cut(s)	931
BsiHKAI	GWGCWC	2 cut(s)	273, 2092
BsiHKCI	CYCGRG	2 cut(s)	313, 459
BsiSI	CCGG	3 cut(s)	123, 221, 1991
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	6 cut(s)	241, 242, 788, 1577, 1818, 1976
BsmAI	GTCTC	6 cut(s)	287, 326, 449, 941, 1865, 1955
BsmBI	CGTCTC	1 cut(s)	1865
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	4 cut(s)	122, 246, 1746, 2085
Bso31I	GGTCTC	2 cut(s)	287, 1955
BsoBI	CYCGRG	2 cut(s)	313, 459
Bsp119I	TTCGAA	3 cut(s)	476, 530, 650
Bsp1286I	GDGCHC	2 cut(s)	273, 2092
Bsp13I	TCCGGA	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	486, 1037, 1567, 2065
Bsp19I	CCATGG	1 cut(s)	1341
BspANI	GGCC	4 cut(s)	122, 246, 1746, 2085
BspCNI	CTCAG	5 cut(s)	358, 1456, 1540, 2114, 2119
BspEI	TCCGGA	1 cut(s)	220
BspHI	TCATGA	3 cut(s)	289, 732, 1684
BspLI	GGNNCC	4 cut(s)	589, 670, 933, 2029
BspMAI	CTGCAG	2 cut(s)	1506, 2044
BspPI	GGATC	3 cut(s)	1032, 1562, 2073
BspQI	GCTCTTC	1 cut(s)	5
BspT104I	TTCGAA	3 cut(s)	476, 530, 650
BspT107I	GGYRCC	1 cut(s)	931
BspTNI	GGTCTC	2 cut(s)	287, 1955
BsrBI	CCGCTC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	903, 1000, 1341, 1516, 2080
BssMI	GATC	4 cut(s)	486, 1037, 1567, 2065
BssNI	GRCGYC	3 cut(s)	93, 156, 932
BssT1I	CCWWGG	2 cut(s)	1341, 2080
Bst2UI	CCWGG	5 cut(s)	377, 1002, 1198, 1518, 1800
Bst4CI	ACNGT	3 cut(s)	61, 764, 2007
Bst6I	CTCTTC	2 cut(s)	5, 1756
BstACI	GRCGYC	3 cut(s)	93, 156, 932
BstAUI	TGTACA	1 cut(s)	63
BstBI	TTCGAA	3 cut(s)	476, 530, 650
BstC8I	GCNNGC	3 cut(s)	124, 1356, 1824
BstDSI	CCRYGG	1 cut(s)	1341
BstF5I	GGATG	6 cut(s)	424, 577, 1453, 1474, 1678, 2029
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	2 cut(s)	171, 934
BstKTI	GATC	4 cut(s)	489, 1040, 1570, 2068
BstMAI	GTCTC	6 cut(s)	287, 326, 449, 941, 1865, 1955
BstMBI	GATC	4 cut(s)	486, 1037, 1567, 2065
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 31, 34, 37, 252, 315, 1364, 1898
BstNI	CCWGG	5 cut(s)	377, 1002, 1198, 1518, 1800
BstNSI	RCATGY	4 cut(s)	304, 1480, 1867, 1990
BstSCI	CCNGG	5 cut(s)	375, 1000, 1196, 1516, 1798
BstSFI	CTRYAG	2 cut(s)	1502, 2040
BstV1I	GCAGC	6 cut(s)	43, 46, 49, 1370, 1516, 1847
BstX2I	RGATCY	1 cut(s)	1037
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	1037
BsuI	GTATCC	2 cut(s)	1151, 1546
BsuRI	GGCC	4 cut(s)	122, 246, 1746, 2085
BtgI	CCRYGG	1 cut(s)	1341
BtgZI	GCGATG	1 cut(s)	384
BtrI	CACGTC	1 cut(s)	1433
BtsCI	GGATG	6 cut(s)	424, 577, 1453, 1474, 1678, 2029
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	6 cut(s)	54, 66, 184, 214, 769, 2003
Cac8I	GCNNGC	3 cut(s)	124, 1356, 1824
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	3 cut(s)	289, 732, 1684
CfoI	GCGC	2 cut(s)	171, 934
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	244, 587, 669, 1979
CseI	GACGC	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	1196
Csp6I	GTAC	3 cut(s)	64, 304, 975
CviQI	GTAC	3 cut(s)	64, 304, 975
DinI	GGCGCC	1 cut(s)	933
DpnI	GATC	4 cut(s)	488, 1039, 1569, 2067
DpnII	GATC	4 cut(s)	486, 1037, 1567, 2065
DraIII	CACNNNGTG	1 cut(s)	2017
EaeI	YGGCCR	2 cut(s)	120, 1744
Eam1104I	CTCTTC	2 cut(s)	5, 1756
EarI	CTCTTC	2 cut(s)	5, 1756
EciI	GGCGGA	2 cut(s)	1315, 1560
Eco130I	CCWWGG	2 cut(s)	1341, 2080
Eco31I	GGTCTC	2 cut(s)	287, 1955
Eco32I	GATATC	1 cut(s)	633
Eco47I	GGWCC	3 cut(s)	587, 669, 1979
Eco57I	CTGAAG	3 cut(s)	927, 1038, 1149
Eco88I	CYCGRG	2 cut(s)	313, 459
EcoRI	GAATTC	5 cut(s)	995, 1331, 1521, 1618, 2096
EcoRII	CCWGG	5 cut(s)	375, 1000, 1196, 1516, 1798
EcoRV	GATATC	1 cut(s)	633
EcoT14I	CCWWGG	2 cut(s)	1341, 2080
EgeI	GGCGCC	1 cut(s)	933
EheI	GGCGCC	1 cut(s)	933
ErhI	CCWWGG	2 cut(s)	1341, 2080
Esp3I	CGTCTC	1 cut(s)	1865
FalI	AAGNNNNNCTT	4 cut(s)	322, 354, 1718, 1750
FaqI	GGGAC	1 cut(s)	573
FauI	CCCGC	3 cut(s)	146, 245, 692
FblI	GTMKAC	1 cut(s)	279
FokI	GGATG	6 cut(s)	431, 584, 1460, 1481, 1685, 2036
FspBI	CTAG	5 cut(s)	750, 1304, 1652, 1839, 2081
GlaI	GCGC	2 cut(s)	170, 933
GsuI	CTGGAG	1 cut(s)	1398
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	4 cut(s)	122, 246, 1746, 2085
HapII	CCGG	3 cut(s)	123, 221, 1991
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	171, 934
Hin1I	GRCGYC	3 cut(s)	93, 156, 932
Hin6I	GCGC	2 cut(s)	169, 932
HinP1I	GCGC	2 cut(s)	169, 932
HincII	GTYRAC	1 cut(s)	1474
HindII	GTYRAC	1 cut(s)	1474
HindIII	AAGCTT	1 cut(s)	1678
HpaII	CCGG	3 cut(s)	123, 221, 1991
HphI	GGTGA	2 cut(s)	1016, 1590
Hpy166II	GTNNAC	3 cut(s)	64, 280, 1474
Hpy8I	GTNNAC	3 cut(s)	64, 280, 1474
Hpy99I	CGWCG	2 cut(s)	158, 161
HpyAV	CCTTC	8 cut(s)	83, 296, 391, 945, 1062, 1093, 1173, 2056
HpyCH4III	ACNGT	3 cut(s)	61, 764, 2007
HpyCH4IV	ACGT	3 cut(s)	156, 1315, 1432
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 31, 34, 37, 252, 315, 1364, 1898
HpySE526I	ACGT	3 cut(s)	156, 1315, 1432
Hsp92I	GRCGYC	3 cut(s)	93, 156, 932
HspAI	GCGC	2 cut(s)	169, 932
KasI	GGCGCC	1 cut(s)	931
Kpn2I	TCCGGA	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	486, 1037, 1567, 2065
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	7 cut(s)	75, 146, 166, 268, 314, 1501, 1846
Lsp1109I	GCAGC	6 cut(s)	43, 46, 49, 1370, 1516, 1847
LweI	GCATC	2 cut(s)	1382, 1879
MabI	ACCWGGT	1 cut(s)	1196
MaeI	CTAG	5 cut(s)	750, 1304, 1652, 1839, 2081
MaeII	ACGT	3 cut(s)	156, 1315, 1432
MaeIII	GTNAC	3 cut(s)	160, 1081, 1192
MalI	GATC	4 cut(s)	488, 1039, 1569, 2067
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	4 cut(s)	486, 1037, 1567, 2065
MflI	RGATCY	1 cut(s)	1037
MhlI	GDGCHC	2 cut(s)	273, 2092
MlsI	TGGCCA	1 cut(s)	1746
MluNI	TGGCCA	1 cut(s)	1746
Mly113I	GGCGCC	1 cut(s)	932
MlyI	GAGTC	3 cut(s)	451, 1538, 1786
MmeI	TCCRAC	2 cut(s)	97, 1848
Mox20I	TGGCCA	1 cut(s)	1746
MroI	TCCGGA	1 cut(s)	220
MroNI	GCCGGC	1 cut(s)	122
MroXI	GAANNNNTTC	2 cut(s)	1680, 1692
MscI	TGGCCA	1 cut(s)	1746
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	1746
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	3 cut(s)	123, 221, 1991
MspR9I	CCNGG	5 cut(s)	377, 1002, 1198, 1518, 1800
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	5 cut(s)	377, 1002, 1198, 1518, 1800
MwoI	GCNNNNNNNGC	8 cut(s)	28, 31, 34, 37, 252, 315, 1364, 1898
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	1341
NdeII	GATC	4 cut(s)	486, 1037, 1567, 2065
NgoMIV	GCCGGC	1 cut(s)	122
NlaIV	GGNNCC	4 cut(s)	589, 670, 933, 2029
NmeAIII	GCCGAG	1 cut(s)	2111
NmuCI	GTSAC	2 cut(s)	160, 1081
NspI	RCATGY	4 cut(s)	304, 1480, 1867, 1990
NspV	TTCGAA	3 cut(s)	476, 530, 650
PaeR7I	CTCGAG	1 cut(s)	313
PagI	TCATGA	3 cut(s)	289, 732, 1684
PciI	ACATGT	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	921
PdiI	GCCGGC	1 cut(s)	124
PdmI	GAANNNNTTC	2 cut(s)	1680, 1692
PfeI	GAWTC	7 cut(s)	224, 821, 854, 1322, 1382, 1778, 1966
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	788
PfoI	TCCNGGA	1 cut(s)	375
PleI	GAGTC	3 cut(s)	451, 1538, 1786
PluTI	GGCGCC	1 cut(s)	935
PpsI	GAGTC	3 cut(s)	451, 1538, 1786
PscI	ACATGT	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	1704
Psp1406I	AACGTT	1 cut(s)	1315
Psp6I	CCWGG	5 cut(s)	375, 1000, 1196, 1516, 1798
PspGI	CCWGG	5 cut(s)	375, 1000, 1196, 1516, 1798
PspN4I	GGNNCC	4 cut(s)	589, 670, 933, 2029
PspPI	GGNCC	4 cut(s)	244, 587, 669, 1979
PspXI	VCTCGAGB	1 cut(s)	313
PstI	CTGCAG	2 cut(s)	1506, 2044
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	1 cut(s)	1037
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	3 cut(s)	65, 305, 976
RsaNI	GTAC	3 cut(s)	64, 304, 975
RseI	CAYNNNNRTG	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	486, 1037, 1567, 2065
Sau96I	GGNCC	4 cut(s)	244, 587, 669, 1979
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	3 cut(s)	451, 1538, 1786
ScrFI	CCNGG	5 cut(s)	377, 1002, 1198, 1518, 1800
SduI	GDGCHC	2 cut(s)	273, 2092
SexAI	ACCWGGT	1 cut(s)	1196
SfaNI	GCATC	2 cut(s)	1382, 1879
SfcI	CTRYAG	2 cut(s)	1502, 2040
SfoI	GGCGCC	1 cut(s)	933
Sfr274I	CTCGAG	1 cut(s)	313
SfuI	TTCGAA	3 cut(s)	476, 530, 650
SinI	GGWCC	3 cut(s)	587, 669, 1979
SlaI	CTCGAG	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	4 cut(s)	263, 313, 403, 1943
SmoI	CTYRAG	4 cut(s)	263, 313, 403, 1943
SspDI	GGCGCC	1 cut(s)	931
SspMI	CTAG	5 cut(s)	750, 1304, 1652, 1839, 2081
StyD4I	CCNGG	5 cut(s)	375, 1000, 1196, 1516, 1798
StyI	CCWWGG	2 cut(s)	1341, 2080
TaaI	ACNGT	3 cut(s)	61, 764, 2007
TaiI	ACGT	3 cut(s)	159, 1318, 1435
TaqI	TCGA	8 cut(s)	87, 314, 476, 489, 530, 650, 925, 1406
TaqII	GACCGA	1 cut(s)	1967
TatI	WGTACW	3 cut(s)	63, 303, 974
TauI	GCSGC	4 cut(s)	25, 28, 31, 192
TfiI	GAWTC	7 cut(s)	224, 821, 854, 1322, 1382, 1778, 1966
TscAI	CASTG	6 cut(s)	54, 66, 191, 214, 769, 2010
TseFI	GTSAC	2 cut(s)	160, 1081
TseI	GCWGC	6 cut(s)	31, 34, 37, 1358, 1504, 1860
Tsp45I	GTSAC	2 cut(s)	160, 1081
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	6 cut(s)	54, 66, 191, 214, 769, 2010
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	3 cut(s)	587, 669, 1979
VspI	ATTAAT	1 cut(s)	1704
XapI	RAATTY	9 cut(s)	471, 995, 1291, 1331, 1521, 1528, 1618, 1691, 2096
XceI	RCATGY	4 cut(s)	304, 1480, 1867, 1990
XhoI	CTCGAG	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	2080
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	2 cut(s)	1680, 1692
XspI	CTAG	5 cut(s)	750, 1304, 1652, 1839, 2081
ZraI	GACGTC	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.