Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Forward (+)

42518867 .. 42523171

Gene Structure 4305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGAAAATCACAAGCATCAGAATCCATCGAAGTCAGTGAACGACGCAGTGTACAAGCTCCAGCTGGCACTCCTCGACGGCGTCAAAACCCTAGACCACCTCTACTTAGCCGGCTCCATAATCTCCCGCTCCGACTACAACGACGTCGTTACGGAGCGATCCATCGCCGACCTATGCGGCTACCCTCTCTGCTCCAATGCCCTACCTTCCGAAGCTTCCCGTTCCCGCAAGGGTCACTATCGCATTTCGCTCAAGGAGCACAAGGTGTACGATCTCCGAGAGACGAAGCTCTACTGCTCCTCCAAGTGCGTGATCGATAGCAAGGCGTTTGCTCAGAGCTTGAGCGAGGAGAGGTGTGATATCTTGGATTTCGGAAAGGTCGAGAGGGTTTTGGGGCAATTTGGGGAAAAAGATGACGAAGGGAAGAAGGAGATTGGGGATTTGGGGATGTCTAAGTTGAAGATTGAAGAAAAGAGTGAGACTTATAGTGGGAAATTGGAGGACTGGGTTGGTCCTTCGAATGCCATTGAAGGATATGTTCCCAAAAAAGATAGGGTTTCCAAGCCGTTGGGTTCGAAAAAGAGCAAACAAGGGTCCAAAGGGAAAGATACGAAGCCGAGTGGTGGAGGGAAACAATTAATTTTGAATGATATGGACTTCATGAGTACACTATTAGCTTGTGATGAATATAGTGTGTCCAAAATGCCACCAACTGTAGCGGGGAATAGTGTTGATACTACGTTAAAGGAACCAAAAGGAAAAGTTGGTGGTAAAGATTCAGAGAGCGGATTTAGTGTGTTGGAAACCTCGGCTGCTCCTAATAAGAGTGAAGTGGGTGTGATGGATGTTGGGGATTTAGGTATGTCTAGGTTGAAGATTGAAGAGAAGGAGGAATCCTTTGTTGGTAAGGCAGAGAAATCGAGTGAGGCTAGACTGAGGTCTTCTCTTAAACATTCGGGGACAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGACGAAAAAATTGATAGTACCGGGAGAAGAAATCTTTGTGAGGTGAGAGACATGGAAGATGGAATCGAAAATCCTGGTGCATTTGTCAGCTTGCACAAACCTTCTACATCAAATGAAGCTGGTTCCTCTTTTAATTGGGTTGATAAGACGATTGATAGTACTAAGAGTGAAAATATTTGTGAGGTTAGAGAAATGCAAGATGCAAAACATGTTCCTGAGGTAGGCAGTTCAGTCCTGCAAGATAATGAATGGTTTGAGTCGGCAGAAGCCTGTGCATCAGCATTGAGTCAGGCAGCCGGTGCTGTTGCAACTGGAGAATCTGATACTAATGATGCTGTGTCAAAAGCCGGGATTATTATATTGCCACGCCCAGATGGTGTGGATGAAGAAGAGTCCATAGTGGATGATGTGTACGAAGAAGATTCCATAGAGGATAGTGTGGATGAAGAAGAGTCTACAGAGGATGTGGACATGCTTGAACCAGAACATGCTGTTTCAAAGTGGCCAAGAAAGCCCGAAAGTTCACAGTTTGATTTATTTAACCCTGAGGATTCTTGGTTTGATGCTCCACCAGATGGTTTCAATTTAACTTTATCTCCTTTTGCAACAATGTGGAATGCACTCTTTACATGGATAACATCATCTACATTGGCTTATATATATGGAAAGGATGACAGTTCCCATGAAGAGTTTCTCTATGTCAATGGGAGAACTTATCCCCATAAGATTGTGTTGGCAGATGGTCGGTCTTCAGAAATCAAGCTAACTGTGGGTGAATCTCTCTCTCGGGCTCTACCAGAAGTTGTTGCTGAACTAGGGCTACCAGTATCCAATTCTAATCTTATCCAGGGGTATGGCTTCATGTTGAATACAATGTCCTTTATTGAGGCGCTACCAGCATTCAGAATGAAACAGTGGCAAGTGATTGCTCTTCTTTTCATTGAGGCCCTCTCTGTTTGTAGGATCCCGGCACTTACTTCTCGCATGACAAATAGAAGGGTACTGATTCAGAAGGTGCTGGATGGTGCCCGTATAAGTGTAGAAGAGTACGAGATTATGAAGGATTTCCTAATACCGCTTGGCCGAGCGCCTCAATTCTCATCCCAGAGTGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

703

Amino Acids

77.41

Weight (kDa)

4.94

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	40 - 115	7e-23	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	2018
AccB7I	CCANNNNNTGG	1 cut(s)	1568
AccBSI	CCGCTC	2 cut(s)	129, 786
AccI	GTMKAC	1 cut(s)	1448
AciI	CCGC	6 cut(s)	127, 177, 226, 719, 786, 2069
AclWI	GGATC	3 cut(s)	153, 1951, 1964
AcoI	YGGCCR	2 cut(s)	1496, 2074
AcuI	CTGAAG	1 cut(s)	1728
AcyI	GRCGYC	2 cut(s)	81, 144
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	8 cut(s)	53, 269, 667, 1012, 1153, 1406, 1995, 2042
AfiI	CCNNNNNNNGG	3 cut(s)	623, 1214, 1568
AflIII	ACRYGT	1 cut(s)	1201
AjnI	CCWGG	2 cut(s)	1066, 1839
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 677, 1083, 1112, 1756
AluI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 677, 1083, 1112, 1756
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	275, 473, 1035
AlwI	GGATC	3 cut(s)	153, 1951, 1964
Ama87I	CYCGRG	1 cut(s)	1779
AoxI	GGCC	3 cut(s)	1496, 1938, 2074
ApeKI	GCWGC	2 cut(s)	812, 1286
AseI	ATTAAT	1 cut(s)	638
Asp700I	GAANNNNTTC	2 cut(s)	1683, 2057
AspLEI	GCGC	2 cut(s)	1885, 2083
AspS9I	GGNCC	3 cut(s)	512, 594, 1939
AsuC2I	CCSGG	3 cut(s)	1015, 1342, 1961
AsuHPI	GGTGA	2 cut(s)	1048, 1778
AsuII	TTCGAA	2 cut(s)	518, 575
AvaI	CYCGRG	1 cut(s)	1779
AvaII	GGWCC	2 cut(s)	512, 594
AxyI	CCTNAGG	2 cut(s)	1209, 1539
BaeGI	GKGCMC	1 cut(s)	2023
BalI	TGGCCA	1 cut(s)	1498
BamHI	GGATCC	1 cut(s)	1956
BanI	GGYRCC	1 cut(s)	2018
BanII	GRGCYC	1 cut(s)	1786
BbsI	GAAGAC	2 cut(s)	933, 1734
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	799, 1298
BccI	CCATC	8 cut(s)	34, 170, 835, 1046, 1361, 1562, 1727, 2009
BceAI	ACGGC	2 cut(s)	94, 550
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	2 cut(s)	1068, 1841
BciVI	GTATCC	1 cut(s)	1831
BcnI	CCSGG	3 cut(s)	1015, 1342, 1961
BcoDI	GTCTC	3 cut(s)	275, 473, 1035
BfaI	CTAG	4 cut(s)	92, 867, 930, 1808
BfmI	CTRYAG	2 cut(s)	714, 1449
BfoI	RGCGCY	2 cut(s)	1886, 2084
BfuI	GTATCC	1 cut(s)	1831
BisI	GCNGC	3 cut(s)	178, 813, 1287
BlsI	GCNGC	3 cut(s)	179, 814, 1288
BmcAI	AGTACT	1 cut(s)	1153
Bme1390I	CCNGG	5 cut(s)	1015, 1068, 1342, 1841, 1961
Bme18I	GGWCC	2 cut(s)	512, 594
BmeT110I	CYCGRG	1 cut(s)	1779
BmgT120I	GGNCC	3 cut(s)	512, 594, 1939
BmiI	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1958, 2020
BmrFI	CCNGG	5 cut(s)	1015, 1068, 1342, 1841, 1961
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	5 cut(s)	25, 1183, 1277, 1315, 1546
BmuI	ACTGGG	1 cut(s)	514
BoxI	GACNNNNGTC	1 cut(s)	937
BpiI	GAAGAC	2 cut(s)	933, 1734
BplI	GAGNNNNNCTC	4 cut(s)	928, 960, 1928, 1960
BpmI	CTGGAG	2 cut(s)	44, 1326
Bpu14I	TTCGAA	2 cut(s)	518, 575
BpuEI	CTTGAG	2 cut(s)	236, 361
BpuMI	CCSGG	3 cut(s)	1015, 1342, 1961
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	81, 144
BsaJI	CCNNGG	2 cut(s)	807, 1840
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 1573, 1603
Bsc4I	CCNNNNNNNGG	3 cut(s)	623, 1214, 1568
Bse118I	RCCGGY	2 cut(s)	110, 1289
Bse1I	ACTGG	3 cut(s)	509, 1309, 1817
Bse21I	CCTNAGG	2 cut(s)	1209, 1539
BseBI	CCWGG	2 cut(s)	1068, 1841
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	807, 1840
BseGI	GGATG	9 cut(s)	453, 850, 1381, 1402, 1441, 1462, 1669, 2020, 2093
BseLI	CCNNNNNNNGG	3 cut(s)	623, 1214, 1568
BseMII	CTCAG	4 cut(s)	347, 926, 1200, 1530
BseNI	ACTGG	3 cut(s)	509, 1309, 1817
BseRI	GAGGAG	3 cut(s)	62, 289, 362
BseSI	GKGCMC	1 cut(s)	2023
BseXI	GCAGC	2 cut(s)	799, 1298
BshFI	GGCC	3 cut(s)	1498, 1940, 2076
BshNI	GGYRCC	1 cut(s)	2018
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	1779
BsiSI	CCGG	5 cut(s)	111, 1014, 1290, 1341, 1961
BslFI	GGGAC	1 cut(s)	973
BslI	CCNNNNNNNGG	3 cut(s)	623, 1214, 1568
BsmAI	GTCTC	3 cut(s)	275, 473, 1035
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	973
BsmI	GAATGC	3 cut(s)	526, 1615, 1892
BsnI	GGCC	3 cut(s)	1498, 1940, 2076
BsoBI	CYCGRG	1 cut(s)	1779
Bsp119I	TTCGAA	2 cut(s)	518, 575
Bsp1286I	GDGCHC	3 cut(s)	261, 1786, 2023
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	158, 271, 312, 1956
BspACI	CCGC	6 cut(s)	127, 177, 226, 719, 786, 2069
BspANI	GGCC	3 cut(s)	1498, 1940, 2076
BspCNI	CTCAG	4 cut(s)	346, 927, 1201, 1531
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1958, 2020
BspPI	GGATC	3 cut(s)	153, 1951, 1964
BspQI	GCTCTTC	1 cut(s)	1929
BspT104I	TTCGAA	2 cut(s)	518, 575
BspT107I	GGYRCC	1 cut(s)	2018
BsrBI	CCGCTC	2 cut(s)	129, 786
BsrFI	RCCGGY	2 cut(s)	110, 1289
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	509, 1309, 1817
BssAI	RCCGGY	2 cut(s)	110, 1289
BssECI	CCNNGG	2 cut(s)	807, 1840
BssMI	GATC	4 cut(s)	158, 271, 312, 1956
BssNI	GRCGYC	2 cut(s)	81, 144
Bst2UI	CCWGG	2 cut(s)	1068, 1841
Bst4CI	ACNGT	5 cut(s)	715, 1521, 1670, 1762, 1908
Bst6I	CTCTTC	6 cut(s)	876, 1377, 1437, 1674, 1929, 2031
BstACI	GRCGYC	2 cut(s)	81, 144
BstAPI	GCANNNNNTGC	1 cut(s)	1292
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	2 cut(s)	518, 575
BstC8I	GCNNGC	3 cut(s)	66, 112, 1085
BstDEI	CTNAG	8 cut(s)	106, 333, 453, 935, 971, 1155, 1209, 1539
BstENI	CCTNNNNNAGG	1 cut(s)	1212
BstF5I	GGATG	9 cut(s)	453, 850, 1381, 1402, 1441, 1462, 1669, 2020, 2093
BstH2I	RGCGCY	2 cut(s)	1886, 2084
BstHHI	GCGC	2 cut(s)	1885, 2083
BstKTI	GATC	4 cut(s)	161, 274, 315, 1959
BstMAI	GTCTC	3 cut(s)	275, 473, 1035
BstMBI	GATC	4 cut(s)	158, 271, 312, 1956
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 1292, 1504, 1889
BstNI	CCWGG	2 cut(s)	1068, 1841
BstNSI	RCATGY	3 cut(s)	1205, 1468, 1484
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	5 cut(s)	1013, 1066, 1340, 1839, 1959
BstSFI	CTRYAG	2 cut(s)	714, 1449
BstSLI	GKGCMC	1 cut(s)	2023
BstV1I	GCAGC	2 cut(s)	799, 1298
BstV2I	GAAGAC	2 cut(s)	933, 1734
BstX2I	RGATCY	1 cut(s)	1956
BstXI	CCANNNNNNTGG	2 cut(s)	568, 1847
BstYI	RGATCY	1 cut(s)	1956
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	1209, 1539
BsuI	GTATCC	1 cut(s)	1831
BsuRI	GGCC	3 cut(s)	1498, 1940, 2076
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	9 cut(s)	453, 850, 1381, 1402, 1441, 1462, 1669, 2020, 2093
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	42, 54, 1913
Cac8I	GCNNGC	3 cut(s)	66, 112, 1085
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	2 cut(s)	1885, 2083
Cfr10I	RCCGGY	2 cut(s)	110, 1289
Cfr13I	GGNCC	3 cut(s)	512, 594, 1939
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	2 cut(s)	53, 70
Csp6I	GTAC	8 cut(s)	52, 268, 666, 1011, 1152, 1405, 1994, 2041
CviAII	CATG	9 cut(s)	661, 1045, 1202, 1465, 1481, 1623, 1676, 1855, 1978
CviQI	GTAC	8 cut(s)	52, 268, 666, 1011, 1152, 1405, 1994, 2041
DdeI	CTNAG	8 cut(s)	106, 333, 453, 935, 971, 1155, 1209, 1539
DpnI	GATC	4 cut(s)	160, 273, 314, 1958
DpnII	GATC	4 cut(s)	158, 271, 312, 1956
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	1496, 2074
Eam1104I	CTCTTC	6 cut(s)	876, 1377, 1437, 1674, 1929, 2031
EarI	CTCTTC	6 cut(s)	876, 1377, 1437, 1674, 1929, 2031
Eco24I	GRGCYC	1 cut(s)	1786
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	512, 594
Eco57I	CTGAAG	1 cut(s)	1728
Eco81I	CCTNAGG	2 cut(s)	1209, 1539
Eco88I	CYCGRG	1 cut(s)	1779
EcoNI	CCTNNNNNAGG	1 cut(s)	1212
EcoO109I	RGGNCCY	1 cut(s)	1939
EcoRII	CCWGG	2 cut(s)	1066, 1839
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	1786
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	9 cut(s)	664, 1048, 1205, 1468, 1484, 1626, 1679, 1858, 1981
FaqI	GGGAC	1 cut(s)	973
FatI	CATG	9 cut(s)	660, 1044, 1201, 1464, 1480, 1622, 1675, 1854, 1977
FauI	CCCGC	3 cut(s)	134, 233, 712
FblI	GTMKAC	1 cut(s)	1448
Fnu4HI	GCNGC	3 cut(s)	178, 813, 1287
FokI	GGATG	9 cut(s)	460, 857, 1388, 1409, 1448, 1469, 1676, 2027, 2080
FriOI	GRGCYC	1 cut(s)	1786
Fsp4HI	GCNGC	3 cut(s)	178, 813, 1287
FspBI	CTAG	4 cut(s)	92, 867, 930, 1808
GlaI	GCGC	2 cut(s)	1884, 2082
GluI	GCNGC	3 cut(s)	178, 813, 1287
GsuI	CTGGAG	2 cut(s)	44, 1326
HaeII	RGCGCY	2 cut(s)	1886, 2084
HaeIII	GGCC	3 cut(s)	1498, 1940, 2076
HapII	CCGG	5 cut(s)	111, 1014, 1290, 1341, 1961
HgaI	GACGC	2 cut(s)	53, 70
HhaI	GCGC	2 cut(s)	1885, 2083
Hin1I	GRCGYC	2 cut(s)	81, 144
Hin1II	CATG	9 cut(s)	664, 1048, 1205, 1468, 1484, 1626, 1679, 1858, 1981
Hin6I	GCGC	2 cut(s)	1883, 2081
HinP1I	GCGC	2 cut(s)	1883, 2081
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	5 cut(s)	111, 1014, 1290, 1341, 1961
HphI	GGTGA	2 cut(s)	1048, 1778
Hpy166II	GTNNAC	8 cut(s)	40, 52, 268, 668, 1405, 1449, 1462, 1517
Hpy188III	TCNNGA	3 cut(s)	382, 661, 1208
Hpy8I	GTNNAC	8 cut(s)	40, 52, 268, 668, 1405, 1449, 1462, 1517
Hpy99I	CGWCG	4 cut(s)	47, 80, 146, 149
HpyCH4III	ACNGT	5 cut(s)	715, 1521, 1670, 1762, 1908
HpyCH4IV	ACGT	2 cut(s)	144, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 1292, 1504, 1889
HpyF3I	CTNAG	8 cut(s)	106, 333, 453, 935, 971, 1155, 1209, 1539
HpySE526I	ACGT	2 cut(s)	144, 740
Hsp92I	GRCGYC	2 cut(s)	81, 144
Hsp92II	CATG	9 cut(s)	664, 1048, 1205, 1468, 1484, 1626, 1679, 1858, 1981
HspAI	GCGC	2 cut(s)	1883, 2081
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	158, 271, 312, 1956
LguI	GCTCTTC	1 cut(s)	1929
LmnI	GCTCC	9 cut(s)	63, 119, 134, 154, 197, 256, 302, 820, 1564
Lsp1109I	GCAGC	2 cut(s)	799, 1298
LweI	GCATC	5 cut(s)	25, 1183, 1277, 1315, 1546
MaeI	CTAG	4 cut(s)	92, 867, 930, 1808
MaeII	ACGT	2 cut(s)	144, 740
MaeIII	GTNAC	3 cut(s)	148, 233, 982
MalI	GATC	4 cut(s)	160, 273, 314, 1958
MbiI	CCGCTC	2 cut(s)	129, 786
MboI	GATC	4 cut(s)	158, 271, 312, 1956
MflI	RGATCY	1 cut(s)	1956
MhlI	GDGCHC	3 cut(s)	261, 1786, 2023
MlsI	TGGCCA	1 cut(s)	1498
MluCI	AATT	9 cut(s)	398, 494, 635, 639, 1002, 1126, 1576, 1825, 2087
MluNI	TGGCCA	1 cut(s)	1498
MlyI	GAGTC	4 cut(s)	1259, 1288, 1394, 1454
MmeI	TCCRAC	2 cut(s)	156, 780
Mox20I	TGGCCA	1 cut(s)	1498
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	1683, 2057
MscI	TGGCCA	1 cut(s)	1498
MseI	TTAA	6 cut(s)	638, 743, 948, 1125, 1533, 1580
Msp20I	TGGCCA	1 cut(s)	1498
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	5 cut(s)	111, 1014, 1290, 1341, 1961
MspR9I	CCNGG	5 cut(s)	1015, 1068, 1342, 1841, 1961
Mva1269I	GAATGC	3 cut(s)	526, 1615, 1892
MvaI	CCWGG	2 cut(s)	1068, 1841
MwoI	GCNNNNNNNGC	4 cut(s)	256, 1292, 1504, 1889
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	3 cut(s)	1015, 1342, 1961
NdeII	GATC	4 cut(s)	158, 271, 312, 1956
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	9 cut(s)	664, 1048, 1205, 1468, 1484, 1626, 1679, 1858, 1981
NlaIV	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1958, 2020
NmeAIII	GCCGAG	3 cut(s)	642, 788, 2102
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	3 cut(s)	1205, 1468, 1484
NspV	TTCGAA	2 cut(s)	518, 575
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	1 cut(s)	1201
PciSI	GCTCTTC	1 cut(s)	1929
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	3 cut(s)	526, 1615, 1892
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	1683, 2057
PfeI	GAWTC	9 cut(s)	22, 776, 893, 1056, 1310, 1415, 1544, 1769, 1999
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	1568
PkrI	GCNGC	3 cut(s)	179, 814, 1288
PleI	GAGTC	4 cut(s)	1258, 1287, 1393, 1453
PpsI	GAGTC	4 cut(s)	1258, 1287, 1393, 1453
PscI	ACATGT	1 cut(s)	1201
PshAI	GACNNNNGTC	1 cut(s)	937
PshBI	ATTAAT	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	1066, 1839
PspGI	CCWGG	2 cut(s)	1066, 1839
PspN4I	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1958, 2020
PspPI	GGNCC	3 cut(s)	512, 594, 1939
PsrI	GAACNNNNNNTAC	2 cut(s)	1797, 1829
PsuI	RGATCY	1 cut(s)	1956
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	8 cut(s)	53, 269, 667, 1012, 1153, 1406, 1995, 2042
RsaNI	GTAC	8 cut(s)	52, 268, 666, 1011, 1152, 1405, 1994, 2041
SapI	GCTCTTC	1 cut(s)	1929
SaqAI	TTAA	6 cut(s)	638, 743, 948, 1125, 1533, 1580
SatI	GCNGC	3 cut(s)	178, 813, 1287
Sau3AI	GATC	4 cut(s)	158, 271, 312, 1956
Sau96I	GGNCC	3 cut(s)	512, 594, 1939
ScaI	AGTACT	1 cut(s)	1153
SchI	GAGTC	4 cut(s)	1259, 1288, 1394, 1454
ScrFI	CCNGG	5 cut(s)	1015, 1068, 1342, 1841, 1961
SduI	GDGCHC	3 cut(s)	261, 1786, 2023
SfaNI	GCATC	5 cut(s)	25, 1183, 1277, 1315, 1546
SfcI	CTRYAG	2 cut(s)	714, 1449
SfuI	TTCGAA	2 cut(s)	518, 575
SinI	GGWCC	2 cut(s)	512, 594
SmlI	CTYRAG	2 cut(s)	251, 340
SmoI	CTYRAG	2 cut(s)	251, 340
Sse9I	AATT	9 cut(s)	398, 494, 635, 639, 1002, 1126, 1576, 1825, 2087
SsiI	CCGC	6 cut(s)	127, 177, 226, 719, 786, 2069
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	4 cut(s)	92, 867, 930, 1808
StyD4I	CCNGG	5 cut(s)	1013, 1066, 1340, 1839, 1959
TaaI	ACNGT	5 cut(s)	715, 1521, 1670, 1762, 1908
TaiI	ACGT	2 cut(s)	147, 743
TaqI	TCGA	8 cut(s)	29, 75, 315, 381, 518, 575, 920, 1059
TaqII	GACCGA	1 cut(s)	1728
TasI	AATT	9 cut(s)	398, 494, 635, 639, 1002, 1126, 1576, 1825, 2087
TatI	WGTACW	3 cut(s)	51, 665, 1151
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	9 cut(s)	22, 776, 893, 1056, 1310, 1415, 1544, 1769, 1999
Tru1I	TTAA	6 cut(s)	638, 743, 948, 1125, 1533, 1580
Tru9I	TTAA	6 cut(s)	638, 743, 948, 1125, 1533, 1580
TscAI	CASTG	3 cut(s)	42, 54, 1913
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	812, 1286
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	42, 54, 1913
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	1568
VpaK11BI	GGWCC	2 cut(s)	512, 594
VspI	ATTAAT	1 cut(s)	638
XagI	CCTNNNNNAGG	1 cut(s)	1212
XceI	RCATGY	3 cut(s)	1205, 1468, 1484
XmiI	GTMKAC	1 cut(s)	1448
XmnI	GAANNNNTTC	2 cut(s)	1683, 2057
XspI	CTAG	4 cut(s)	92, 867, 930, 1808
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.